PMC:7281546 / 40564-45819
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T223 | 24-27 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T224 | 55-58 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T225 | 90-93 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T226 | 135-138 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T227 | 188-191 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T228 | 265-275 | Body_part | denotes | organelles | http://purl.org/sig/ont/fma/fma63832 |
T229 | 285-288 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T230 | 578-585 | Body_part | denotes | cytosol | http://purl.org/sig/ont/fma/fma66836 |
T231 | 651-654 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T232 | 707-717 | Body_part | denotes | organelles | http://purl.org/sig/ont/fma/fma63832 |
T233 | 766-769 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T234 | 839-842 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T235 | 1141-1152 | Body_part | denotes | fibroblasts | http://purl.org/sig/ont/fma/fma63877 |
T236 | 1317-1320 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T237 | 1505-1508 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T238 | 1530-1537 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T239 | 1634-1637 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T240 | 1645-1652 | Body_part | denotes | cytosol | http://purl.org/sig/ont/fma/fma66836 |
T241 | 1770-1773 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T242 | 1806-1809 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T243 | 2082-2093 | Body_part | denotes | macrophages | http://purl.org/sig/ont/fma/fma63261 |
T244 | 2153-2169 | Body_part | denotes | epithelial cells | http://purl.org/sig/ont/fma/fma66768 |
T245 | 2164-2169 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T246 | 2259-2275 | Body_part | denotes | epithelial cells | http://purl.org/sig/ont/fma/fma66768 |
T247 | 2270-2275 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T248 | 2890-2893 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T249 | 2929-2932 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T250 | 2961-2965 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T251 | 2966-2970 | Body_part | denotes | mRNA | http://purl.org/sig/ont/fma/fma67122 |
T252 | 3025-3028 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T253 | 4660-4664 | Body_part | denotes | ExoN | http://purl.org/sig/ont/fma/fma84120 |
T254 | 4707-4711 | Body_part | denotes | ExoN | http://purl.org/sig/ont/fma/fma84120 |
T255 | 4823-4827 | Body_part | denotes | ExoN | http://purl.org/sig/ont/fma/fma84120 |
T256 | 4920-4925 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T257 | 4949-4953 | Body_part | denotes | ExoN | http://purl.org/sig/ont/fma/fma84120 |
T258 | 5164-5167 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T259 | 5191-5194 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T101 | 1211-1219 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T102 | 1663-1679 | Disease | denotes | viral infections | http://purl.obolibrary.org/obo/MONDO_0005108 |
T103 | 3233-3241 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T104 | 4511-4521 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
T105 | 5233-5242 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T368 | 59-66 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
T369 | 144-145 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T370 | 335-345 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membranous |
T371 | 415-438 | http://purl.obolibrary.org/obo/GO_0031988 | denotes | membrane-bound vesicles |
T372 | 515-516 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T373 | 740-748 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
T374 | 924-927 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T375 | 944-952 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
T376 | 988-989 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T377 | 1004-1009 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T378 | 1080-1081 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T379 | 1132-1137 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T380 | 1141-1152 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblasts |
T381 | 1279-1287 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
T382 | 1348-1351 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T383 | 1380-1381 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T384 | 1465-1473 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
T385 | 1736-1741 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T386 | 1911-1919 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
T387 | 1920-1923 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T388 | 1979-1988 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signaling |
T389 | 2006-2014 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
T390 | 2153-2163 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
T391 | 2164-2169 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T392 | 2259-2269 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
T393 | 2270-2275 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T394 | 2510-2517 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animals |
T395 | 2604-2612 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
T396 | 2633-2634 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T397 | 2733-2736 | http://purl.obolibrary.org/obo/CLO_0001562 | denotes | a 2 |
T398 | 2733-2736 | http://purl.obolibrary.org/obo/CLO_0001563 | denotes | a 2 |
T399 | 2961-2965 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
T400 | 3256-3259 | http://purl.obolibrary.org/obo/CLO_0001562 | denotes | a 2 |
T401 | 3256-3259 | http://purl.obolibrary.org/obo/CLO_0001563 | denotes | a 2 |
T402 | 3535-3536 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T403 | 3599-3602 | http://purl.obolibrary.org/obo/CLO_0054061 | denotes | 132 |
T404 | 3614-3615 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T405 | 3725-3728 | http://purl.obolibrary.org/obo/CLO_0001195 | denotes | 219 |
T406 | 3774-3782 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
T407 | 3825-3831 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | active |
T408 | 3836-3839 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T409 | 3877-3885 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
T410 | 3921-3922 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T411 | 4107-4113 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signal |
T412 | 4122-4132 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
T413 | 4405-4408 | http://purl.obolibrary.org/obo/CLO_0054061 | denotes | 132 |
T414 | 4475-4476 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T415 | 4666-4674 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
T416 | 4682-4683 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T417 | 4781-4782 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T418 | 4828-4836 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
T419 | 4920-4925 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T420 | 4954-4962 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
T421 | 5104-5107 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T422 | 5220-5221 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T346 | 111-116 | Chemical | denotes | dsRNA | http://purl.obolibrary.org/obo/CHEBI_67208 |
T347 | 149-161 | Chemical | denotes | triphosphate | http://purl.obolibrary.org/obo/CHEBI_18036 |
T348 | 1129-1131 | Chemical | denotes | WT | http://purl.obolibrary.org/obo/CHEBI_141450 |
T349 | 1386-1389 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
T350 | 1390-1400 | Chemical | denotes | antagonist | http://purl.obolibrary.org/obo/CHEBI_48706 |
T351 | 1530-1537 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T352 | 1819-1828 | Chemical | denotes | molecules | http://purl.obolibrary.org/obo/CHEBI_25367 |
T353 | 1975-1978 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
T354 | 2058-2061 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
T355 | 2129-2132 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
T356 | 2662-2671 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
T357 | 3408-3411 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
T358 | 3412-3423 | Chemical | denotes | antagonists | http://purl.obolibrary.org/obo/CHEBI_48706 |
T359 | 3491-3494 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
T360 | 3965-3968 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
T361 | 4169-4172 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
T362 | 4356-4365 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
T363 | 4421-4431 | Chemical | denotes | inhibitors | http://purl.obolibrary.org/obo/CHEBI_35222 |
T364 | 4534-4544 | Chemical | denotes | antivirals | http://purl.obolibrary.org/obo/CHEBI_22587 |
T365 | 4738-4743 | Chemical | denotes | dsRNA | http://purl.obolibrary.org/obo/CHEBI_67208 |
T366 | 4791-4800 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
T367 | 4993-5002 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T292 | 285-300 | http://purl.obolibrary.org/obo/GO_0039703 | denotes | RNA replication |
T293 | 545-558 | http://purl.obolibrary.org/obo/GO_0045087 | denotes | innate immune |
T294 | 723-748 | http://purl.obolibrary.org/obo/GO_0004521 | denotes | endoribonuclease activity |
T295 | 766-777 | http://purl.obolibrary.org/obo/GO_0036260 | denotes | RNA capping |
T296 | 766-777 | http://purl.obolibrary.org/obo/GO_0009452 | denotes | RNA capping |
T297 | 877-888 | http://purl.obolibrary.org/obo/GO_0009056 | denotes | degradation |
T298 | 1099-1116 | http://purl.obolibrary.org/obo/GO_0019079 | denotes | viral replication |
T299 | 1099-1116 | http://purl.obolibrary.org/obo/GO_0019058 | denotes | viral replication |
T300 | 1317-1330 | http://purl.obolibrary.org/obo/GO_0032774 | denotes | RNA synthesis |
T301 | 1321-1330 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | synthesis |
T302 | 1663-1679 | http://purl.obolibrary.org/obo/GO_0016032 | denotes | viral infections |
T303 | 1979-1988 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
T304 | 2381-2405 | http://purl.obolibrary.org/obo/GO_0034343 | denotes | type III IFNs production |
T305 | 2536-2550 | http://purl.obolibrary.org/obo/GO_0019076 | denotes | viral shedding |
T306 | 2672-2687 | http://purl.obolibrary.org/obo/GO_0045087 | denotes | innate immunity |
T307 | 2781-2804 | http://purl.obolibrary.org/obo/GO_0044405 | denotes | recognition by the host |
T308 | 3059-3070 | http://purl.obolibrary.org/obo/GO_0032259 | denotes | Methylation |
T309 | 3280-3293 | http://purl.obolibrary.org/obo/GO_0045087 | denotes | innate immune |
T310 | 3560-3575 | http://purl.obolibrary.org/obo/GO_0045087 | denotes | innate immunity |
T311 | 3576-3586 | http://purl.obolibrary.org/obo/GO_0065007 | denotes | regulation |
T312 | 3958-3979 | http://purl.obolibrary.org/obo/GO_0032606 | denotes | type I IFN production |
T313 | 4046-4060 | http://purl.obolibrary.org/obo/GO_0042783 | denotes | immune evasion |
T314 | 4107-4121 | http://purl.obolibrary.org/obo/GO_0007165 | denotes | signal pathway |
T315 | 4356-4374 | http://purl.obolibrary.org/obo/GO_0051607 | denotes | antiviral response |
T316 | 4386-4403 | http://purl.obolibrary.org/obo/GO_0019079 | denotes | viral replication |
T317 | 4386-4403 | http://purl.obolibrary.org/obo/GO_0019058 | denotes | viral replication |
T318 | 4791-4809 | http://purl.obolibrary.org/obo/GO_0051607 | denotes | antiviral response |
T319 | 4881-4903 | http://purl.obolibrary.org/obo/GO_0045087 | denotes | innate immune response |
T320 | 4888-4903 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune response |
T321 | 4993-5011 | http://purl.obolibrary.org/obo/GO_0051607 | denotes | antiviral response |
T322 | 5191-5206 | http://purl.obolibrary.org/obo/GO_0006401 | denotes | RNA degradation |
T323 | 5195-5206 | http://purl.obolibrary.org/obo/GO_0009056 | denotes | degradation |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T294 | 0-6 | Sentence | denotes | 4.2.5. |
T295 | 7-39 | Sentence | denotes | Evasion of Viral RNA Recognition |
T296 | 40-181 | Sentence | denotes | CoVs belong to RNA viruses, which produce several RNA species, such as dsRNA intermediates and RNA with a 5′-triphosphate during replication. |
T297 | 182-317 | Sentence | denotes | These RNA intermediates are potent stimulators of PRRs and are associated with the organelles of viral RNA replication, DMVs [213,214]. |
T298 | 318-479 | Sentence | denotes | DMVs formed from membranous rearrangements seem to sequester the replication intermediates using membrane-bound vesicles or invaginations to keep away from PRRs. |
T299 | 480-597 | Sentence | denotes | Therefore, the form of DMVs may be a strategy for PEDV to escape innate immune recognition in the cytosol (Figure 2). |
T300 | 598-681 | Sentence | denotes | However, whether DMVs alone are sufficient to shield RNA from PRRs remains unknown. |
T301 | 682-899 | Sentence | denotes | Besides, the replication organelles, the endoribonuclease activity and viral 5′ end RNA capping/protection mechanisms are also the critical ways of avoiding RNA recognition or protecting it from degradation [132,135]. |
T302 | 900-913 | Sentence | denotes | 1) PEDV nsp15 |
T303 | 914-1022 | Sentence | denotes | CoV nsp15 has EndoU catalytic activity that was initially thought to play a vital role in virus replication. |
T304 | 1023-1159 | Sentence | denotes | However, the catalytic-defective EndoU of MHV shows only a subtle defect in viral replication compared to WT virus in fibroblasts [215]. |
T305 | 1160-1240 | Sentence | denotes | Similar results are found for the nsp15 mutants of SARS-CoV and HCoV-229E [216]. |
T306 | 1241-1331 | Sentence | denotes | These findings suggest that the EndoU activity of nsp15 is not required for RNA synthesis. |
T307 | 1332-1423 | Sentence | denotes | Recently, nsp15 has been demonstrated to act as a new IFN antagonist of CoVs [117,118,217]. |
T308 | 1424-1583 | Sentence | denotes | Recent reports indicate that CoVs’ EndoU activity is essential for prevention of RNA recognition by MDA5, protein kinase R (PKR), and OAS/RNAse L system [118]. |
T309 | 1584-1680 | Sentence | denotes | PKR and OAS/RNAse L recognize and destroy foreign RNA in the cytosol to defend viral infections. |
T310 | 1681-1829 | Sentence | denotes | To counteract the function of PKR and OAS/RNAse L, the virus hides or modifies its viral RNA, to avoid the exposure of viral RNA to these molecules. |
T311 | 1830-1899 | Sentence | denotes | In all CoVs, the EndoU catalytic domain in nsp15 is highly conserved. |
T312 | 1900-1995 | Sentence | denotes | PEDV EndoU activity has been indicated as having an antagonistic effect on IFN signaling [135]. |
T313 | 1996-2170 | Sentence | denotes | The EndoU activity of PEDV nsp15 not only inhibits the type I IFN response in porcine macrophages, but also antagonizes the type III IFN response in porcine epithelial cells. |
T314 | 2171-2319 | Sentence | denotes | The replication of EndoU-mutant PEDV (icPEDV-EnUmt) is considerably impaired in porcine epithelial cells compared to the wild type PEDV (icPEDV-wt). |
T315 | 2320-2475 | Sentence | denotes | The icPEDV-EnUmt clearly induces early and robust type I and type III IFNs production, as well as ISGs’ expression compared with that induced by icPEDV-wt. |
T316 | 2476-2565 | Sentence | denotes | The EndoU-deficient PEDV infected animals also show reduced viral shedding and mortality. |
T317 | 2566-2705 | Sentence | denotes | These results indicate that the EndoU activity of PEDV nsp15 plays a vital role in evading host antiviral innate immunity (Figure 2) [135]. |
T318 | 2706-2719 | Sentence | denotes | 2) PEDV nsp16 |
T319 | 2720-2771 | Sentence | denotes | CoV nsp16 is a 2′-O-methyltransferase (2′-O-MTase). |
T320 | 2772-2894 | Sentence | denotes | To evade recognition by the host immune sensors, many CoVs encode methyltransferases involved in the capping of viral RNA. |
T321 | 2895-3058 | Sentence | denotes | This modification makes the viral RNA indistinguishable with host cell mRNA, which is important to avoid the recognition of viral RNA by MDA5 (Figure 2) [121,218]. |
T322 | 3059-3219 | Sentence | denotes | Methylation of the two sites in the 5′ cap is catalyzed by three nsps, including nsp14 (the N-7-MTase), nsp16 (the 2′-O-MTase), and nsp10 [112,123,124,125,126]. |
T323 | 3220-3352 | Sentence | denotes | For example, SARS-CoV nsp16 acts as a 2′-O-MTase to prevent innate immune recognition and promote viral proliferation [113,121,123]. |
T324 | 3353-3433 | Sentence | denotes | PEDV nsp14 and nsp16 have been identified as the viral IFN antagonists [65,132]. |
T325 | 3434-3604 | Sentence | denotes | The overexpression of nsp14 or nsp16 remarkably inhibits IFN-β production, but nsp16 appears to play a more important role in innate immunity regulation than nsp14 [132]. |
T326 | 3605-3730 | Sentence | denotes | Nsp16 is a highly conserved methyltransferase which contains an invariant KDKE motif within the methyltransferase core [219]. |
T327 | 3731-3783 | Sentence | denotes | This KDKE motif is required to mediate its activity. |
T328 | 3784-3892 | Sentence | denotes | Notably, the mutation of any of the KDKE active sit has been shown to abolish the 2′-O-MTase activity [123]. |
T329 | 3893-4061 | Sentence | denotes | PEDV nsp16 KDKE motif plays a critical role in the inhibition of type I IFN production, suggesting the important role of the 2′-O-MTase in PEDV-mediated immune evasion. |
T330 | 4062-4267 | Sentence | denotes | PEDV nsp16 negatively regulates RLR-mediated signal pathway activation, and inhibits the expression of the IFN-stimulated IFIT family members (IFIT1, IFIT2, IFIT3), which in turn promotes PEDV replication. |
T331 | 4268-4410 | Sentence | denotes | Taken together, these results demonstrate that PEDV nsp16 negatively regulates cellular antiviral response to promote viral replication [132]. |
T332 | 4411-4590 | Sentence | denotes | Screening inhibitors targeting the 2′-O-MTase of nsp16 might be a prominent strategy to inhibit CoV infections and develop antivirals for treatment of the diseases caused by CoVs. |
T333 | 4591-4681 | Sentence | denotes | Additionally, CoVs nsp14 also includes the 3′-to-5′ exoribonuclease (ExoN) activity [113]. |
T334 | 4682-4816 | Sentence | denotes | A mutation of TGEV nsp14 ExoN generates lower levels of dsRNA than wildtype TGEV and thus triggers a reduced antiviral response [220]. |
T335 | 4817-4932 | Sentence | denotes | Nsp14 ExoN activity is also critical for the resistance of host innate immune response in MHV-infected cells [221]. |
T336 | 4933-5074 | Sentence | denotes | The role of nsp ExoN activity of PEDV in counteracting host antiviral response should be investigated to uncover more functions of PEDV nsps. |
T337 | 5075-5255 | Sentence | denotes | These data suggest that PEDV has evolved multiple evasive mechanisms to circumvent viral RNA recognition or prevent RNA degradation to establish a successful infection in the host. |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32403318-25054883-82827459 | 308-311 | 25054883 | denotes | 213 |
32403318-20825348-82827460 | 312-315 | 20825348 | denotes | 214 |
32403318-30849413-82827461 | 890-893 | 30849413 | denotes | 132 |
32403318-30728254-82827462 | 894-897 | 30728254 | denotes | 135 |
32403318-17898055-82827463 | 1154-1157 | 17898055 | denotes | 215 |
32403318-21422822-82827464 | 1235-1238 | 21422822 | denotes | 216 |
32403318-28158275-82827465 | 1410-1413 | 28158275 | denotes | 117 |
32403318-28484023-82827466 | 1414-1417 | 28484023 | denotes | 118 |
32403318-29307596-82827467 | 1418-1421 | 29307596 | denotes | 217 |
32403318-28484023-82827468 | 1578-1581 | 28484023 | denotes | 118 |
32403318-30728254-82827469 | 1990-1993 | 30728254 | denotes | 135 |
32403318-30728254-82827470 | 2700-2703 | 30728254 | denotes | 135 |
32403318-21217758-82827471 | 3049-3052 | 21217758 | denotes | 121 |
32403318-25278144-82827472 | 3053-3056 | 25278144 | denotes | 218 |
32403318-19208801-82827473 | 3198-3201 | 19208801 | denotes | 112 |
32403318-18417574-82827474 | 3202-3205 | 18417574 | denotes | 123 |
32403318-22022266-82827475 | 3206-3209 | 22022266 | denotes | 124 |
32403318-26159422-82827476 | 3210-3213 | 26159422 | denotes | 125 |
32403318-25074927-82827477 | 3214-3217 | 25074927 | denotes | 126 |
32403318-16549795-82827478 | 3339-3342 | 16549795 | denotes | 113 |
32403318-21217758-82827479 | 3343-3346 | 21217758 | denotes | 121 |
32403318-18417574-82827480 | 3347-3350 | 18417574 | denotes | 123 |
32403318-26773386-82827481 | 3425-3427 | 26773386 | denotes | 65 |
32403318-30849413-82827482 | 3428-3431 | 30849413 | denotes | 132 |
32403318-30849413-82827483 | 3599-3602 | 30849413 | denotes | 132 |
32403318-12032088-82827484 | 3725-3728 | 12032088 | denotes | 219 |
32403318-18417574-82827485 | 3887-3890 | 18417574 | denotes | 123 |
32403318-30849413-82827486 | 4405-4408 | 30849413 | denotes | 132 |
32403318-16549795-82827487 | 4676-4679 | 16549795 | denotes | 113 |
32403318-27009949-82827488 | 4811-4814 | 27009949 | denotes | 220 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
1418 | 40-44 | Species | denotes | CoVs | Tax:11118 |
1419 | 530-534 | Species | denotes | PEDV | Tax:28295 |
1420 | 146-161 | Chemical | denotes | 5′-triphosphate | |
1421 | 503-507 | Chemical | denotes | DMVs | |
1423 | 903-907 | Species | denotes | PEDV | Tax:28295 |
1458 | 928-933 | Gene | denotes | EndoU | Gene:8909 |
1459 | 1273-1278 | Gene | denotes | EndoU | Gene:8909 |
1460 | 1386-1389 | Gene | denotes | IFN | Gene:3439 |
1461 | 1459-1464 | Gene | denotes | EndoU | Gene:8909 |
1462 | 1524-1528 | Gene | denotes | MDA5 | Gene:64135 |
1463 | 1530-1546 | Gene | denotes | protein kinase R | Gene:5610 |
1464 | 1905-1910 | Gene | denotes | EndoU | Gene:8909 |
1465 | 1975-1978 | Gene | denotes | IFN | Gene:3439 |
1466 | 2000-2005 | Gene | denotes | EndoU | Gene:8909 |
1467 | 2190-2195 | Gene | denotes | EndoU | Gene:8909 |
1468 | 2598-2603 | Gene | denotes | EndoU | Gene:8909 |
1469 | 1056-1061 | Gene | denotes | EndoU | Gene:8909 |
1470 | 914-917 | Species | denotes | CoV | Tax:11118 |
1471 | 1211-1219 | Species | denotes | SARS-CoV | Tax:694009 |
1472 | 1224-1233 | Species | denotes | HCoV-229E | Tax:11137 |
1473 | 1404-1408 | Species | denotes | CoVs | Tax:11118 |
1474 | 1453-1457 | Species | denotes | CoVs | Tax:11118 |
1475 | 1837-1841 | Species | denotes | CoVs | Tax:11118 |
1476 | 1900-1904 | Species | denotes | PEDV | Tax:28295 |
1477 | 2018-2022 | Species | denotes | PEDV | Tax:28295 |
1478 | 2203-2207 | Species | denotes | PEDV | Tax:28295 |
1479 | 2302-2306 | Species | denotes | PEDV | Tax:28295 |
1480 | 2616-2620 | Species | denotes | PEDV | Tax:28295 |
1481 | 2074-2081 | Species | denotes | porcine | Tax:2018513 |
1482 | 2145-2152 | Species | denotes | porcine | Tax:2018513 |
1483 | 2251-2258 | Species | denotes | porcine | Tax:2018513 |
1484 | 1065-1068 | Species | denotes | MHV | Tax:11138 |
1485 | 1847-1852 | Gene | denotes | EndoU | Gene:8909 |
1486 | 1558-1561 | Disease | denotes | OAS | MESH:C537769 |
1487 | 1592-1595 | Disease | denotes | OAS | MESH:C537769 |
1488 | 1663-1679 | Disease | denotes | viral infections | MESH:D001102 |
1489 | 1719-1722 | Disease | denotes | OAS | MESH:C537769 |
1490 | 2480-2509 | Disease | denotes | EndoU-deficient PEDV infected | MESH:D007239 |
1491 | 2555-2564 | Disease | denotes | mortality | MESH:D003643 |
1493 | 2709-2713 | Species | denotes | PEDV | Tax:28295 |
1520 | 3032-3036 | Gene | denotes | MDA5 | Gene:64135 |
1521 | 3408-3411 | Gene | denotes | IFN | Gene:3439 |
1522 | 3491-3496 | Gene | denotes | IFN-β | Gene:3439 |
1523 | 4169-4172 | Gene | denotes | IFN | Gene:3439 |
1524 | 4205-4210 | Gene | denotes | IFIT1 | Gene:3434 |
1525 | 4212-4217 | Gene | denotes | IFIT2 | Gene:3433 |
1526 | 4219-4224 | Gene | denotes | IFIT3 | Gene:3437 |
1527 | 2720-2723 | Species | denotes | CoV | Tax:11118 |
1528 | 2826-2830 | Species | denotes | CoVs | Tax:11118 |
1529 | 3233-3241 | Species | denotes | SARS-CoV | Tax:694009 |
1530 | 3353-3357 | Species | denotes | PEDV | Tax:28295 |
1531 | 3893-3897 | Species | denotes | PEDV | Tax:28295 |
1532 | 4032-4036 | Species | denotes | PEDV | Tax:28295 |
1533 | 4062-4066 | Species | denotes | PEDV | Tax:28295 |
1534 | 4250-4254 | Species | denotes | PEDV | Tax:28295 |
1535 | 4315-4319 | Species | denotes | PEDV | Tax:28295 |
1536 | 4585-4589 | Species | denotes | CoVs | Tax:11118 |
1537 | 4605-4609 | Species | denotes | CoVs | Tax:11118 |
1538 | 4696-4700 | Species | denotes | TGEV | Tax:11149 |
1539 | 4758-4762 | Species | denotes | TGEV | Tax:11149 |
1540 | 4966-4970 | Species | denotes | PEDV | Tax:28295 |
1541 | 5064-5068 | Species | denotes | PEDV | Tax:28295 |
1542 | 5099-5103 | Species | denotes | PEDV | Tax:28295 |
1543 | 4507-4521 | Disease | denotes | CoV infections | MESH:D018352 |
1544 | 4907-4919 | Disease | denotes | MHV-infected | MESH:D007239 |
1545 | 5233-5242 | Disease | denotes | infection | MESH:D007239 |