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PMC:7279430 / 27954-28753 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1620 43-47 Species denotes E)-α Tax:114629
1621 115-125 Species denotes SARS-CoV-2 Tax:2697049
1622 198-202 Species denotes E)-α Tax:114629
1623 345-349 Species denotes E)-α Tax:114629
1624 504-508 Species denotes E)-α Tax:114629
1625 59-74 Chemical denotes (E)-β-farnesene
1626 76-90 Chemical denotes (E,E)-farnesol
1627 96-109 Chemical denotes (E)-nerolidol
1628 222-237 Chemical denotes (E)-β-farnesene
1629 239-243 Chemical denotes aqua MESH:D014867
1630 246-260 Chemical denotes (E,E)-farnesol
1631 262-269 Chemical denotes magenta MESH:D012394
1632 276-289 Chemical denotes (E)-nerolidol
1633 369-384 Chemical denotes (E)-β-farnesene
1634 386-390 Chemical denotes aqua MESH:D014867
1635 393-407 Chemical denotes (E,E)-farnesol
1636 409-416 Chemical denotes magenta MESH:D012394
1637 423-436 Chemical denotes (E)-nerolidol
1638 573-588 Chemical denotes (E)-β-farnesene
1639 643-657 Chemical denotes (E,E)-farnesol
1640 712-725 Chemical denotes (E)-nerolidol
1641 747-755 Chemical denotes Hydrogen MESH:D006859

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T161 115-123 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T223 157-158 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T224 301-302 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T442 48-57 Chemical denotes farnesene http://purl.obolibrary.org/obo/CHEBI_39237
T443 65-74 Chemical denotes farnesene http://purl.obolibrary.org/obo/CHEBI_39237
T444 76-90 Chemical denotes (E,E)-farnesol http://purl.obolibrary.org/obo/CHEBI_16619
T445 82-90 Chemical denotes farnesol http://purl.obolibrary.org/obo/CHEBI_28600
T446 100-109 Chemical denotes nerolidol http://purl.obolibrary.org/obo/CHEBI_7524
T447 203-212 Chemical denotes farnesene http://purl.obolibrary.org/obo/CHEBI_39237
T448 228-237 Chemical denotes farnesene http://purl.obolibrary.org/obo/CHEBI_39237
T449 239-243 Chemical denotes aqua http://purl.obolibrary.org/obo/CHEBI_15377
T450 246-260 Chemical denotes (E,E)-farnesol http://purl.obolibrary.org/obo/CHEBI_16619
T451 252-260 Chemical denotes farnesol http://purl.obolibrary.org/obo/CHEBI_28600
T452 262-269 Chemical denotes magenta http://purl.obolibrary.org/obo/CHEBI_87661
T453 280-289 Chemical denotes nerolidol http://purl.obolibrary.org/obo/CHEBI_7524
T454 350-359 Chemical denotes farnesene http://purl.obolibrary.org/obo/CHEBI_39237
T455 375-384 Chemical denotes farnesene http://purl.obolibrary.org/obo/CHEBI_39237
T456 386-390 Chemical denotes aqua http://purl.obolibrary.org/obo/CHEBI_15377
T457 393-407 Chemical denotes (E,E)-farnesol http://purl.obolibrary.org/obo/CHEBI_16619
T458 399-407 Chemical denotes farnesol http://purl.obolibrary.org/obo/CHEBI_28600
T459 409-416 Chemical denotes magenta http://purl.obolibrary.org/obo/CHEBI_87661
T460 427-436 Chemical denotes nerolidol http://purl.obolibrary.org/obo/CHEBI_7524
T461 509-518 Chemical denotes farnesene http://purl.obolibrary.org/obo/CHEBI_39237
T462 579-588 Chemical denotes farnesene http://purl.obolibrary.org/obo/CHEBI_39237
T463 643-657 Chemical denotes (E,E)-farnesol http://purl.obolibrary.org/obo/CHEBI_16619
T464 649-657 Chemical denotes farnesol http://purl.obolibrary.org/obo/CHEBI_28600
T465 716-725 Chemical denotes nerolidol http://purl.obolibrary.org/obo/CHEBI_7524
T466 747-755 Chemical denotes Hydrogen http://purl.obolibrary.org/obo/CHEBI_18276

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T227 0-148 Sentence denotes Figure 3 Lowest-energy docked poses of (E,E)-α-farnesene, (E)-β-farnesene, (E,E)-farnesol, and (E)-nerolidol with SARS-CoV-2 endoribonuclease (PDB:
T228 149-746 Sentence denotes 6VWW). (A) Ribbon structure of the enzyme and (E,E)-α-farnesene (green), (E)-β-farnesene (aqua), (E,E)-farnesol (magenta), and (E)-nerolidol (orange). (B) Solid structure of the enzyme showing (E,E)-α-farnesene (green), (E)-β-farnesene (aqua), (E,E)-farnesol (magenta), and (E)-nerolidol (orange) in the binding cleft. (C) Lowest-energy docked pose of (E,E)-α-farnesene in the binding site. (D) Lowest-energy docked pose of (E)-β-farnesene in the binding site. (E) Lowest-energy docked pose of (E,E)-farnesol in the binding site. (F) Lowest-energy docked pose of (E)-nerolidol in the binding site.
T229 747-799 Sentence denotes Hydrogen bonds are indicated with blue dashed lines.