PMC:7279430 / 27954-28753
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
1620 | 43-47 | Species | denotes | E)-α | Tax:114629 |
1621 | 115-125 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
1622 | 198-202 | Species | denotes | E)-α | Tax:114629 |
1623 | 345-349 | Species | denotes | E)-α | Tax:114629 |
1624 | 504-508 | Species | denotes | E)-α | Tax:114629 |
1625 | 59-74 | Chemical | denotes | (E)-β-farnesene | |
1626 | 76-90 | Chemical | denotes | (E,E)-farnesol | |
1627 | 96-109 | Chemical | denotes | (E)-nerolidol | |
1628 | 222-237 | Chemical | denotes | (E)-β-farnesene | |
1629 | 239-243 | Chemical | denotes | aqua | MESH:D014867 |
1630 | 246-260 | Chemical | denotes | (E,E)-farnesol | |
1631 | 262-269 | Chemical | denotes | magenta | MESH:D012394 |
1632 | 276-289 | Chemical | denotes | (E)-nerolidol | |
1633 | 369-384 | Chemical | denotes | (E)-β-farnesene | |
1634 | 386-390 | Chemical | denotes | aqua | MESH:D014867 |
1635 | 393-407 | Chemical | denotes | (E,E)-farnesol | |
1636 | 409-416 | Chemical | denotes | magenta | MESH:D012394 |
1637 | 423-436 | Chemical | denotes | (E)-nerolidol | |
1638 | 573-588 | Chemical | denotes | (E)-β-farnesene | |
1639 | 643-657 | Chemical | denotes | (E,E)-farnesol | |
1640 | 712-725 | Chemical | denotes | (E)-nerolidol | |
1641 | 747-755 | Chemical | denotes | Hydrogen | MESH:D006859 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T161 | 115-123 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T223 | 157-158 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T224 | 301-302 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T442 | 48-57 | Chemical | denotes | farnesene | http://purl.obolibrary.org/obo/CHEBI_39237 |
T443 | 65-74 | Chemical | denotes | farnesene | http://purl.obolibrary.org/obo/CHEBI_39237 |
T444 | 76-90 | Chemical | denotes | (E,E)-farnesol | http://purl.obolibrary.org/obo/CHEBI_16619 |
T445 | 82-90 | Chemical | denotes | farnesol | http://purl.obolibrary.org/obo/CHEBI_28600 |
T446 | 100-109 | Chemical | denotes | nerolidol | http://purl.obolibrary.org/obo/CHEBI_7524 |
T447 | 203-212 | Chemical | denotes | farnesene | http://purl.obolibrary.org/obo/CHEBI_39237 |
T448 | 228-237 | Chemical | denotes | farnesene | http://purl.obolibrary.org/obo/CHEBI_39237 |
T449 | 239-243 | Chemical | denotes | aqua | http://purl.obolibrary.org/obo/CHEBI_15377 |
T450 | 246-260 | Chemical | denotes | (E,E)-farnesol | http://purl.obolibrary.org/obo/CHEBI_16619 |
T451 | 252-260 | Chemical | denotes | farnesol | http://purl.obolibrary.org/obo/CHEBI_28600 |
T452 | 262-269 | Chemical | denotes | magenta | http://purl.obolibrary.org/obo/CHEBI_87661 |
T453 | 280-289 | Chemical | denotes | nerolidol | http://purl.obolibrary.org/obo/CHEBI_7524 |
T454 | 350-359 | Chemical | denotes | farnesene | http://purl.obolibrary.org/obo/CHEBI_39237 |
T455 | 375-384 | Chemical | denotes | farnesene | http://purl.obolibrary.org/obo/CHEBI_39237 |
T456 | 386-390 | Chemical | denotes | aqua | http://purl.obolibrary.org/obo/CHEBI_15377 |
T457 | 393-407 | Chemical | denotes | (E,E)-farnesol | http://purl.obolibrary.org/obo/CHEBI_16619 |
T458 | 399-407 | Chemical | denotes | farnesol | http://purl.obolibrary.org/obo/CHEBI_28600 |
T459 | 409-416 | Chemical | denotes | magenta | http://purl.obolibrary.org/obo/CHEBI_87661 |
T460 | 427-436 | Chemical | denotes | nerolidol | http://purl.obolibrary.org/obo/CHEBI_7524 |
T461 | 509-518 | Chemical | denotes | farnesene | http://purl.obolibrary.org/obo/CHEBI_39237 |
T462 | 579-588 | Chemical | denotes | farnesene | http://purl.obolibrary.org/obo/CHEBI_39237 |
T463 | 643-657 | Chemical | denotes | (E,E)-farnesol | http://purl.obolibrary.org/obo/CHEBI_16619 |
T464 | 649-657 | Chemical | denotes | farnesol | http://purl.obolibrary.org/obo/CHEBI_28600 |
T465 | 716-725 | Chemical | denotes | nerolidol | http://purl.obolibrary.org/obo/CHEBI_7524 |
T466 | 747-755 | Chemical | denotes | Hydrogen | http://purl.obolibrary.org/obo/CHEBI_18276 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T227 | 0-148 | Sentence | denotes | Figure 3 Lowest-energy docked poses of (E,E)-α-farnesene, (E)-β-farnesene, (E,E)-farnesol, and (E)-nerolidol with SARS-CoV-2 endoribonuclease (PDB: |
T228 | 149-746 | Sentence | denotes | 6VWW). (A) Ribbon structure of the enzyme and (E,E)-α-farnesene (green), (E)-β-farnesene (aqua), (E,E)-farnesol (magenta), and (E)-nerolidol (orange). (B) Solid structure of the enzyme showing (E,E)-α-farnesene (green), (E)-β-farnesene (aqua), (E,E)-farnesol (magenta), and (E)-nerolidol (orange) in the binding cleft. (C) Lowest-energy docked pose of (E,E)-α-farnesene in the binding site. (D) Lowest-energy docked pose of (E)-β-farnesene in the binding site. (E) Lowest-energy docked pose of (E,E)-farnesol in the binding site. (F) Lowest-energy docked pose of (E)-nerolidol in the binding site. |
T229 | 747-799 | Sentence | denotes | Hydrogen bonds are indicated with blue dashed lines. |