PMC:7279430 / 17176-17536
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T31 | 332-339 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 715 | 36-40 | Gene | denotes | ACE2 | Gene:59272 |
| 716 | 344-348 | Gene | denotes | ACE2 | Gene:59272 |
| 721 | 326-331 | Gene | denotes | spike | Gene:43740568 |
| 728 | 30-35 | Species | denotes | human | Tax:9606 |
| 729 | 117-121 | Species | denotes | E)-α | Tax:114629 |
| 730 | 315-325 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T109 | 315-323 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T126 | 30-35 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T127 | 255-256 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T128 | 257-263 | http://purl.obolibrary.org/obo/UBERON_0002553 | denotes | cavity |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T260 | 17-24 | Chemical | denotes | ligands | http://purl.obolibrary.org/obo/CHEBI_52214 |
| T261 | 122-131 | Chemical | denotes | farnesene | http://purl.obolibrary.org/obo/CHEBI_39237 |
| T262 | 139-148 | Chemical | denotes | farnesene | http://purl.obolibrary.org/obo/CHEBI_39237 |
| T263 | 150-164 | Chemical | denotes | (E,E)-farnesol | http://purl.obolibrary.org/obo/CHEBI_16619 |
| T264 | 156-164 | Chemical | denotes | farnesol | http://purl.obolibrary.org/obo/CHEBI_28600 |
| T265 | 170-179 | Chemical | denotes | nerolidol | http://purl.obolibrary.org/obo/CHEBI_7524 |
| T266 | 332-339 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T112 | 0-360 | Sentence | denotes | The best docking ligands with human ACE2, i.e., normalized docking scores < -100 kJ/mol (α-bulnesene, eremanthin, (E,E)-α-farnesene, (E)-β-farnesene, (E,E)-farnesol, (E)-nerolidol, β-sesquiphellandrene, and (Z)-spiroether), all show docking preference to a cavity removed from the interaction interface between the SARS-CoV-2 spike protein and ACE2 (Figure 6). |