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PMC:7279430 / 0-1141 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 303-310 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T2 645-648 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T3 659-662 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T4 736-743 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
3 0-14 Chemical denotes Essential Oils MESH:D009822
4 49-63 Chemical denotes Essential Oils MESH:D009822
5 73-93 Disease denotes SARS-CoV-2 Infection MESH:C000657245
43 515-519 Gene denotes Mpro Gene:8673700
44 686-690 Gene denotes RdRp Gene:43740578
45 730-735 Gene denotes spike Gene:43740568
46 771-800 Gene denotes angiotensin−converting enzyme Gene:1636
47 802-807 Gene denotes hACE2 Gene:59272
48 876-880 Gene denotes Mpro Gene:8673700
49 331-378 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
50 380-390 Species denotes SARS-CoV-2 Tax:2697049
51 478-488 Species denotes SARS-CoV-2 Tax:2697049
52 504-514 Species denotes SARS-CoV-2 Tax:2697049
53 522-532 Species denotes SARS-CoV-2 Tax:2697049
54 552-562 Species denotes SARS-CoV-2 Tax:2697049
55 578-588 Species denotes SARS-CoV-2 Tax:2697049
56 616-626 Species denotes SARS-CoV-2 Tax:2697049
57 634-644 Species denotes SARS-CoV-2 Tax:2697049
58 675-685 Species denotes SARS-CoV-2 Tax:2697049
59 719-729 Species denotes SARS-CoV-2 Tax:2697049
60 745-755 Species denotes SARS-CoV-2 Tax:2697049
61 765-770 Species denotes human Tax:9606
62 865-875 Species denotes SARS-CoV-2 Tax:2697049
63 961-969 Species denotes SARS−CoV Tax:694009
64 991-995 Species denotes E)-α Tax:114629
65 1097-1107 Species denotes SARS-CoV-2 Tax:2697049
68 132-146 Chemical denotes Essential oils MESH:D009822
69 256-269 Chemical denotes essential oil MESH:D009822
70 889-914 Chemical denotes sesquiterpene hydrocarbon
71 915-930 Chemical denotes (E)-β-farnesene
72 1007-1022 Chemical denotes (E)-β-farnesene
73 1028-1042 Chemical denotes (E,E)−farnesol
74 1044-1058 Chemical denotes (E,E)−Farnesol

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 73-81 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T2 84-93 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550
T3 331-378 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T4 331-364 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T5 380-388 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 478-486 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 504-512 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 522-530 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 552-560 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 578-586 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T11 616-624 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 634-642 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T13 675-683 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 719-727 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T15 745-753 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 865-873 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 961-965 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T18 1097-1105 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 213-220 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T2 393-394 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T3 756-758 http://purl.obolibrary.org/obo/CLO_0008882 denotes rS
T4 765-770 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 169-185 Chemical denotes antiviral agents http://purl.obolibrary.org/obo/CHEBI_22587
T2 256-280 Chemical denotes essential oil components http://purl.obolibrary.org/obo/CHEBI_27311
T3 256-269 Chemical denotes essential oil http://purl.obolibrary.org/obo/CHEBI_83630
T4 303-310 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T5 448-472 Chemical denotes essential oil components http://purl.obolibrary.org/obo/CHEBI_27311
T6 448-461 Chemical denotes essential oil http://purl.obolibrary.org/obo/CHEBI_83630
T7 589-592 Chemical denotes ADP http://purl.obolibrary.org/obo/CHEBI_16761|http://purl.obolibrary.org/obo/CHEBI_456216|http://purl.obolibrary.org/obo/CHEBI_73342
T10 593-599 Chemical denotes ribose http://purl.obolibrary.org/obo/CHEBI_33942|http://purl.obolibrary.org/obo/CHEBI_47013
T12 736-743 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T13 771-782 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T14 889-902 Chemical denotes sesquiterpene http://purl.obolibrary.org/obo/CHEBI_35189
T15 903-914 Chemical denotes hydrocarbon http://purl.obolibrary.org/obo/CHEBI_24632
T16 921-930 Chemical denotes farnesene http://purl.obolibrary.org/obo/CHEBI_39237
T17 949-956 Chemical denotes ligands http://purl.obolibrary.org/obo/CHEBI_52214
T18 996-1005 Chemical denotes farnesene http://purl.obolibrary.org/obo/CHEBI_39237
T19 1013-1022 Chemical denotes farnesene http://purl.obolibrary.org/obo/CHEBI_39237
T20 1034-1042 Chemical denotes farnesol http://purl.obolibrary.org/obo/CHEBI_28600
T21 1050-1058 Chemical denotes Farnesol http://purl.obolibrary.org/obo/CHEBI_28600

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 303-318 http://purl.obolibrary.org/obo/GO_0006605 denotes protein targets
T2 603-614 http://purl.obolibrary.org/obo/GO_0016791 denotes phosphatase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-94 Sentence denotes Essential Oils as Antiviral Agents, Potential of Essential Oils to Treat SARS-CoV-2 Infection:
T2 95-121 Sentence denotes An In-Silico Investigation
T3 123-131 Sentence denotes Abstract
T4 132-221 Sentence denotes Essential oils have shown promise as antiviral agents against several pathogenic viruses.
T5 222-392 Sentence denotes In this work we hypothesized that essential oil components may interact with key protein targets of the 2019 severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).
T6 393-809 Sentence denotes A molecular docking analysis was carried out using 171 essential oil components with SARS-CoV-2 main protease (SARS-CoV-2 Mpro), SARS-CoV-2 endoribonucleoase (SARS-CoV-2 Nsp15/NendoU), SARS-CoV-2 ADP-ribose-1″-phosphatase (SARS-CoV-2 ADRP), SARS-CoV-2 RNA-dependent RNA polymerase (SARS-CoV-2 RdRp), the binding domain of the SARS-CoV-2 spike protein (SARS-CoV-2 rS), and human angiotensin−converting enzyme (hACE2).
T7 810-931 Sentence denotes The compound with the best normalized docking score to SARS-CoV-2 Mpro was the sesquiterpene hydrocarbon (E)-β-farnesene.
T8 932-1113 Sentence denotes The best docking ligands for SARS−CoV Nsp15/NendoU were (E,E)-α-farnesene, (E)-β-farnesene, and (E,E)−farnesol. (E,E)−Farnesol showed the most exothermic docking to SARS-CoV-2 ADRP.