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PMC:7278709 / 9411-10991 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T20 114-125 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T21 346-357 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T22 472-483 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T23 602-625 https://glytoucan.org/Structures/Glycans/G50850NI denotes N-acetylneuraminic acid
T24 602-625 https://glytoucan.org/Structures/Glycans/G81533KY denotes N-acetylneuraminic acid
T25 836-847 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T26 932-955 https://glytoucan.org/Structures/Glycans/G50850NI denotes N-acetylneuraminic acid
T27 932-955 https://glytoucan.org/Structures/Glycans/G81533KY denotes N-acetylneuraminic acid
T28 1140-1147 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T29 1151-1158 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose
T30 1166-1185 https://glytoucan.org/Structures/Glycans/G64581RP denotes N-acetylglucosamine

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T168 114-125 CHEBI:26667;CHEBI:26667 denotes sialic acid
T169 126-133 CHEBI:17089;CHEBI:17089 denotes glycans
T170 166-177 SO:0000409 denotes recognition
T171 178-186 SO:0000110 denotes features
T172 209-216 NCBITaxon:10239 denotes viruses
T173 248-257 UBERON:0000922;GO:0009790 denotes embryonic
T174 258-269 GO:0009790 denotes development
T175 271-287 GO:0007399 denotes neurodevelopment
T176 346-357 CHEBI:26667;CHEBI:26667 denotes sialic acid
T177 451-466 CHEBI:25508;CHEBI:25508 denotes neuraminic acid
T178 472-483 CHEBI:26667;CHEBI:26667 denotes sialic acid
T179 602-625 CHEBI:17012;CHEBI:17012 denotes N-acetylneuraminic acid
T180 627-629 CHEBI:53025;CHEBI:53025 denotes 2-
T181 629-633 CHEBI:17865;CHEBI:17865 denotes keto
T182 634-635 CHEBI:53025;CHEBI:53025 denotes 3
T183 654-662 CHEBI:53025;CHEBI:53025 denotes galacto-
T184 662-673 CHEBI:78708;CHEBI:78708 denotes nonulosonic
T185 674-678 CHEBI:37527;CHEBI:37527 denotes acid
T186 684-691 CHEBI:52029;CHEBI:52029 denotes diamino
T187 691-692 CHEBI:17634;CHEBI:17634 denotes -
T188 692-699 CHEBI:52029;CHEBI:52029 denotes 3,5,7,9
T189 699-700 CHEBI:75055;CHEBI:75055 denotes -
T190 700-705 CHEBI:52029;CHEBI:52029 denotes tetra
T191 705-706 CHEBI:53025;CHEBI:53025 denotes -
T192 714-721 CHEBI:17634;CHEBI:17634 denotes glycero
T193 724-732 CHEBI:53025;CHEBI:53025 denotes galacto-
T194 733-744 CHEBI:78708;CHEBI:78708 denotes nonulosonic
T195 745-749 CHEBI:37527;CHEBI:37527 denotes acid
T196 759-766 CHEBI:52029;CHEBI:52029 denotes diamino
T197 766-767 CHEBI:17369;CHEBI:17369 denotes -
T198 767-780 CHEBI:52029;CHEBI:52029 denotes 3,5,7,9-tetra
T199 780-781 CHEBI:17369;CHEBI:17369 denotes -
T200 781-786 CHEBI:53025;CHEBI:53025 denotes deoxy
T201 786-787 CHEBI:17369;CHEBI:17369 denotes -
T202 787-788 CHEBI:53025;CHEBI:53025 denotes l
T203 788-789 CHEBI:17369;CHEBI:17369 denotes -
T204 789-796 CHEBI:17634;CHEBI:17634 denotes glycero
T205 796-797 CHEBI:17369;CHEBI:17369 denotes -
T206 797-798 CHEBI:53025;CHEBI:53025 denotes l
T207 798-799 CHEBI:17369;CHEBI:17369 denotes -
T208 799-804 CHEBI:37684;CHEBI:37684 denotes manno
T209 804-805 CHEBI:17369;CHEBI:17369 denotes -
T210 805-816 CHEBI:78708;CHEBI:78708 denotes nonulosonic
T211 817-821 CHEBI:37527;CHEBI:37527 denotes acid
T212 836-847 CHEBI:26667;CHEBI:26667 denotes sialic acid
T213 932-955 CHEBI:17012;CHEBI:17012 denotes N-acetylneuraminic acid
T214 976-983 CHEBI:17089;CHEBI:17089 denotes glycans
T215 1040-1050 NCBITaxon:2759 denotes eukaryotes
T216 1081-1087 CHEBI:17089;CHEBI:17089 denotes glycan
T217 1140-1147 CHEBI:17234;CHEBI:17234 denotes glucose
T218 1151-1158 CHEBI:37684;CHEBI:37684 denotes mannose
T219 1168-1185 CHEBI:59640;CHEBI:59640 denotes acetylglucosamine
T220 1206-1212 CHEBI:17089;CHEBI:17089 denotes glycan
T221 1261-1286 CHEBI:50699;CHEBI:50699 denotes oligosaccharyltransferase
T222 1394-1403 GO:0005737 denotes cytoplasm
T223 1408-1429 GO:0005783 denotes endoplasmic reticulum
T224 1489-1496 CHEBI:17089;CHEBI:17089 denotes glycans
T225 1564-1579 GO:0005794 denotes Golgi apparatus

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T78 142-147 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T79 445-450 Body_part denotes sugar http://purl.org/sig/ont/fma/fma82737
T80 602-625 Body_part denotes N-acetylneuraminic acid http://purl.org/sig/ont/fma/fma82788
T81 932-955 Body_part denotes N-acetylneuraminic acid http://purl.org/sig/ont/fma/fma82788
T82 1140-1147 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T83 1151-1158 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T84 1166-1185 Body_part denotes N-acetylglucosamine http://purl.org/sig/ont/fma/fma82787
T85 1363-1368 Body_part denotes sugar http://purl.org/sig/ont/fma/fma82737
T86 1394-1403 Body_part denotes cytoplasm http://purl.org/sig/ont/fma/fma66835
T87 1408-1429 Body_part denotes endoplasmic reticulum http://purl.org/sig/ont/fma/fma63842
T88 1440-1446 Body_part denotes sugars http://purl.org/sig/ont/fma/fma82737
T89 1515-1520 Body_part denotes sugar http://purl.org/sig/ont/fma/fma82737
T90 1548-1556 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T91 1564-1579 Body_part denotes Golgi apparatus http://purl.org/sig/ont/fma/fma63843

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T29 225-234 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T96 142-147 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T97 209-216 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T98 383-384 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T99 402-403 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 1040-1050 http://purl.obolibrary.org/obo/NCBITaxon_2759 denotes eukaryotes
T101 1062-1063 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T102 1088-1091 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T103 1239-1240 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 1290-1291 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 1300-1307 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T106 1524-1525 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T111 114-125 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667
T112 121-125 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T113 126-133 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T114 346-357 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667
T115 353-357 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T116 438-444 Chemical denotes carbon http://purl.obolibrary.org/obo/CHEBI_27594|http://purl.obolibrary.org/obo/CHEBI_33415
T118 451-466 Chemical denotes neuraminic acid http://purl.obolibrary.org/obo/CHEBI_49018
T119 462-466 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T120 472-483 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667
T121 479-483 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T122 523-538 Chemical denotes neuraminic acid http://purl.obolibrary.org/obo/CHEBI_49018
T123 534-538 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T124 550-555 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T125 602-625 Chemical denotes N-acetylneuraminic acid http://purl.obolibrary.org/obo/CHEBI_17012
T126 621-625 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T127 674-678 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T128 745-749 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T129 817-821 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T130 836-847 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667
T131 843-847 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T132 925-930 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T133 932-955 Chemical denotes N-acetylneuraminic acid http://purl.obolibrary.org/obo/CHEBI_17012
T134 951-955 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T135 976-983 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T136 1140-1147 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T138 1151-1158 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T139 1166-1185 Chemical denotes N-acetylglucosamine http://purl.obolibrary.org/obo/CHEBI_28009|http://purl.obolibrary.org/obo/CHEBI_59640
T141 1300-1307 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T142 1489-1496 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T143 1548-1556 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T3 248-269 http://purl.obolibrary.org/obo/GO_0009790 denotes embryonic development
T4 1026-1035 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T54 0-320 Sentence denotes Despite their diversity, and perhaps because of it (i.e. because that diversity implies more information content) sialic acid glycans of host cells are key molecular recognition features not only for entry of viruses such as influenza, but also in embryonic development, neurodevelopment, reprogramming, and oncogenesis.
T55 321-376 Sentence denotes Correctly speaking, even sialic acid itself is diverse.
T56 377-467 Sentence denotes It is a generic term for a family of derivatives of the nine-carbon sugar neuraminic acid.
T57 468-585 Sentence denotes The sialic acid family includes some 43 derivatives of neuraminic acid, but these acids rarely appear free in nature.
T58 586-822 Sentence denotes Members include N-acetylneuraminic acid, 2-keto-3-deoxy-d-glycero-d-galacto-nonulosonic acid, 5,7-diamino-3,5,7,9-tetra-deoxy-d-glycero-d-galacto- nonulosonic acid, and 5,7-diamino-3,5,7,9-tetra-deoxy-l-glycero-l-manno-nonulosonic acid.
T59 823-956 Sentence denotes If the term “sialic acid” is used unqualified, it usually refers to the representative member of this group, N-acetylneuraminic acid.
T60 957-1036 Sentence denotes The variability of glycans is not random but reflects their modes of synthesis.
T61 1037-1187 Sentence denotes In eukaryotes generally, a typical N-linked glycan has an initial core that consists of 14 residues (3 glucose, 9 mannose, and 2 N-acetylglucosamine).
T62 1188-1341 Sentence denotes This preassembled glycan is usually transferred by a glycosyltransferase oligosaccharyltransferase to a nascent peptide chain within the reticular lumen.
T63 1342-1466 Sentence denotes This initial core 14-sugar unit is assembled in the cytoplasm and endoplasmic reticulum and other sugars may be added later.
T64 1467-1580 Sentence denotes In contrast, O-linked glycans are assembled one sugar at a time at the outset on proteins in the Golgi apparatus.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
229 1166-1167 Gene denotes N Gene:43740575
230 1072-1073 Gene denotes N Gene:43740575
231 932-933 Gene denotes N Gene:43740575
232 602-603 Gene denotes N Gene:43740575
233 225-234 Species denotes influenza Tax:11552
234 114-133 Chemical denotes sialic acid glycans
235 346-357 Chemical denotes sialic acid MESH:D019158
236 438-450 Chemical denotes carbon sugar
237 451-466 Chemical denotes neuraminic acid MESH:D009438
238 472-483 Chemical denotes sialic acid MESH:D019158
239 523-538 Chemical denotes neuraminic acid MESH:D009438
240 627-678 Chemical denotes 2-keto-3-deoxy-d-glycero-d-galacto-nonulosonic acid
241 680-749 Chemical denotes 5,7-diamino-3,5,7,9-tetra-deoxy-d-glycero-d-galacto- nonulosonic acid
242 755-821 Chemical denotes 5,7-diamino-3,5,7,9-tetra-deoxy-l-glycero-l-manno-nonulosonic acid
243 836-847 Chemical denotes sialic acid MESH:D019158
244 976-983 Chemical denotes glycans MESH:D011134
245 1140-1147 Chemical denotes glucose MESH:D005947
246 1151-1158 Chemical denotes mannose MESH:D008358
247 1206-1212 Chemical denotes glycan MESH:D011134
248 1360-1368 Chemical denotes 14-sugar
249 1440-1446 Chemical denotes sugars MESH:D000073893
250 1480-1496 Chemical denotes O-linked glycans
251 1515-1520 Chemical denotes sugar MESH:D000073893