PMC:7278709 / 47327-48069
Annnotations
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1084 | 180-211 | SO:0000853 | denotes | hemagglutinin Influenza A virus |
| T1085 | 293-306 | CHEBI:17089;CHEBI:17089 | denotes | GW----AAY, an |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T344 | 160-170 | Body_part | denotes | tryptophan | http://purl.org/sig/ont/fma/fma82767 |
| T345 | 476-484 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T346 | 716-726 | Body_part | denotes | tryptophan | http://purl.org/sig/ont/fma/fma82767 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T120 | 194-203 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T121 | 263-272 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T122 | 323-332 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T123 | 488-497 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T467 | 204-205 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T468 | 206-211 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T469 | 273-274 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T470 | 275-280 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T471 | 333-334 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T472 | 335-340 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T473 | 498-499 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T474 | 500-505 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T695 | 160-170 | Chemical | denotes | tryptophan | http://purl.obolibrary.org/obo/CHEBI_16828|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_57719|http://purl.obolibrary.org/obo/CHEBI_57912 |
| T699 | 476-484 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T700 | 536-538 | Chemical | denotes | SG | http://purl.obolibrary.org/obo/CHEBI_74814 |
| T701 | 716-726 | Chemical | denotes | tryptophan | http://purl.obolibrary.org/obo/CHEBI_16828|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_57719|http://purl.obolibrary.org/obo/CHEBI_57912 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T282 | 0-362 | Sentence | denotes | Many hemaglutanin and neuraminidase matches were found with SSSGWTAGAAAYY using BLASTp, the top 100 varying from 64% match and 63% identities that preserve the tryptophan, such as hemagglutinin Influenza A virus, GenBank AXB35920.1 SSGW--GAVN, and neuraminidase, Influenza A virus AFK13818.1 SGW----AAY, and neuraminidase, Influenza A virus ANZ90284.1, SSAWSASA. |
| T283 | 363-453 | Sentence | denotes | Looking at the larger sequence context, 95% of these scored over 0.75 on the above system. |
| T284 | 454-742 | Sentence | denotes | However, nucleocapsid proteins of Influenza A virus such as sequence QIQ4588 with SG-TAGAA and AAZ08011.1 as STSG-AAGAA also appear in the top 100 matches along with the above and with comparable scores, but with one obvious and significant difference, that the tryptophan (W) is missing. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 933 | 248-261 | Gene | denotes | neuraminidase | Gene:4758 |
| 934 | 308-321 | Gene | denotes | neuraminidase | Gene:4758 |
| 935 | 22-35 | Gene | denotes | neuraminidase | Gene:4758 |
| 936 | 194-211 | Species | denotes | Influenza A virus | Tax:11320 |
| 937 | 263-280 | Species | denotes | Influenza A virus | Tax:11320 |
| 938 | 323-340 | Species | denotes | Influenza A virus | Tax:11320 |
| 939 | 488-505 | Species | denotes | Influenza A virus | Tax:11320 |
| 940 | 160-170 | Chemical | denotes | tryptophan | MESH:D014364 |
| 941 | 716-726 | Chemical | denotes | tryptophan | MESH:D014364 |