PMC:7278709 / 27613-28602
Annnotations
LitCovid_Glycan-Motif-Structure
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T49 | 142-153 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acid |
T50 | 285-296 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acid |
T51 | 481-492 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acid |
T52 | 557-568 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acid |
T53 | 790-801 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | sialic acid |
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T509 | 86-93 | SO:0000417 | denotes | domains |
T510 | 142-148 | CHEBI:30563;CHEBI:30563 | denotes | sialic |
T511 | 285-296 | CHEBI:26667;CHEBI:26667 | denotes | sialic acid |
T512 | 297-303 | CHEBI:17089;CHEBI:17089 | denotes | glycan |
T513 | 481-487 | CHEBI:30563;CHEBI:30563 | denotes | sialic |
T514 | 493-499 | CHEBI:17089;CHEBI:17089 | denotes | glycan |
T515 | 508-515 | SO:0000417 | denotes | domains |
T516 | 557-563 | CHEBI:30563;CHEBI:30563 | denotes | sialic |
T517 | 564-568 | CHEBI:48107;CHEBI:48107 | denotes | acid |
T518 | 790-801 | CHEBI:26667;CHEBI:26667 | denotes | sialic acid |
T519 | 802-809 | CHEBI:17089;CHEBI:17089 | denotes | glycans |
T520 | 822-828 | CHEBI:17234;CHEBI:17234 | denotes | sugars |
T521 | 934-949 | SO:0000409 | denotes | binding regions |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T192 | 74-82 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
T193 | 214-224 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
T194 | 360-370 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
T195 | 822-828 | Body_part | denotes | sugars | http://purl.org/sig/ont/fma/fma82737 |
T196 | 928-933 | Body_part | denotes | sugar | http://purl.org/sig/ont/fma/fma82737 |
T197 | 953-961 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T298 | 108-109 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T299 | 271-272 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T300 | 360-379 | http://purl.obolibrary.org/obo/CHEBI_33708 | denotes | amino acid residues |
T301 | 360-379 | http://purl.obolibrary.org/obo/PR_000036907 | denotes | amino acid residues |
T302 | 450-457 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signals |
T303 | 519-520 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T304 | 694-695 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T305 | 762-763 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T306 | 773-778 | http://purl.obolibrary.org/obo/CLO_0009985 | denotes | focus |
T307 | 853-854 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T315 | 74-82 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
T316 | 142-153 | Chemical | denotes | sialic acid | http://purl.obolibrary.org/obo/CHEBI_26667 |
T317 | 149-153 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T318 | 214-224 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
T319 | 214-219 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T320 | 220-224 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T321 | 285-296 | Chemical | denotes | sialic acid | http://purl.obolibrary.org/obo/CHEBI_26667 |
T322 | 292-296 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T323 | 360-370 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
T324 | 360-365 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T325 | 366-370 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T326 | 481-492 | Chemical | denotes | sialic acid | http://purl.obolibrary.org/obo/CHEBI_26667 |
T327 | 488-492 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T328 | 557-568 | Chemical | denotes | sialic acid | http://purl.obolibrary.org/obo/CHEBI_26667 |
T329 | 564-568 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T330 | 790-801 | Chemical | denotes | sialic acid | http://purl.obolibrary.org/obo/CHEBI_26667 |
T331 | 797-801 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T332 | 802-809 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T333 | 953-961 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T163 | 0-253 | Sentence | denotes | Examination of patterns in potential or known short subsequences in small proteins or domains known to have a function involving non-covalent sialic acid binding and, in absence of any clear patterns, study of the amino acid content of the subsequences. |
T164 | 254-380 | Sentence | denotes | This established a preliminary sialic acid glycan binding score (SABS) for the twenty naturally occurring amino acid residues. |
T165 | 381-527 | Sentence | denotes | However, the short subsequences identified were to be considered as “signals” or “fingerprints” for sialic acid glycan binding domains as a whole. |
T166 | 528-682 | Sentence | denotes | That is, direct contact with sialic acid was not necessarily at (or solely at) the specific short subsequence, for reasons discussed in Results Section 4. |
T167 | 683-989 | Sentence | denotes | This, plus a sequence rather than three dimensional structure perspective, and a specific focus on binding sialic acid glycans rather than sugars in general, resulted in a substantial difference in scores from another major method of predicting sugar binding regions of proteins also discussed later below. |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
551 | 142-153 | Chemical | denotes | sialic acid | MESH:D019158 |
552 | 285-296 | Chemical | denotes | sialic acid | MESH:D019158 |
553 | 297-303 | Chemical | denotes | glycan | MESH:D011134 |
554 | 481-499 | Chemical | denotes | sialic acid glycan | |
555 | 557-568 | Chemical | denotes | sialic acid | MESH:D019158 |
556 | 790-809 | Chemical | denotes | sialic acid glycans | |
557 | 822-828 | Chemical | denotes | sugars | MESH:D000073893 |