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PMC:7278709 / 27613-28602 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T49 142-153 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T50 285-296 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T51 481-492 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T52 557-568 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T53 790-801 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T509 86-93 SO:0000417 denotes domains
T510 142-148 CHEBI:30563;CHEBI:30563 denotes sialic
T511 285-296 CHEBI:26667;CHEBI:26667 denotes sialic acid
T512 297-303 CHEBI:17089;CHEBI:17089 denotes glycan
T513 481-487 CHEBI:30563;CHEBI:30563 denotes sialic
T514 493-499 CHEBI:17089;CHEBI:17089 denotes glycan
T515 508-515 SO:0000417 denotes domains
T516 557-563 CHEBI:30563;CHEBI:30563 denotes sialic
T517 564-568 CHEBI:48107;CHEBI:48107 denotes acid
T518 790-801 CHEBI:26667;CHEBI:26667 denotes sialic acid
T519 802-809 CHEBI:17089;CHEBI:17089 denotes glycans
T520 822-828 CHEBI:17234;CHEBI:17234 denotes sugars
T521 934-949 SO:0000409 denotes binding regions

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T192 74-82 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T193 214-224 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T194 360-370 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T195 822-828 Body_part denotes sugars http://purl.org/sig/ont/fma/fma82737
T196 928-933 Body_part denotes sugar http://purl.org/sig/ont/fma/fma82737
T197 953-961 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T298 108-109 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T299 271-272 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T300 360-379 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residues
T301 360-379 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residues
T302 450-457 http://purl.obolibrary.org/obo/SO_0000418 denotes signals
T303 519-520 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T304 694-695 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T305 762-763 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T306 773-778 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T307 853-854 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T315 74-82 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T316 142-153 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667
T317 149-153 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T318 214-224 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T319 214-219 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T320 220-224 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T321 285-296 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667
T322 292-296 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T323 360-370 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T324 360-365 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T325 366-370 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T326 481-492 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667
T327 488-492 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T328 557-568 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667
T329 564-568 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T330 790-801 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667
T331 797-801 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T332 802-809 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T333 953-961 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T163 0-253 Sentence denotes Examination of patterns in potential or known short subsequences in small proteins or domains known to have a function involving non-covalent sialic acid binding and, in absence of any clear patterns, study of the amino acid content of the subsequences.
T164 254-380 Sentence denotes This established a preliminary sialic acid glycan binding score (SABS) for the twenty naturally occurring amino acid residues.
T165 381-527 Sentence denotes However, the short subsequences identified were to be considered as “signals” or “fingerprints” for sialic acid glycan binding domains as a whole.
T166 528-682 Sentence denotes That is, direct contact with sialic acid was not necessarily at (or solely at) the specific short subsequence, for reasons discussed in Results Section 4.
T167 683-989 Sentence denotes This, plus a sequence rather than three dimensional structure perspective, and a specific focus on binding sialic acid glycans rather than sugars in general, resulted in a substantial difference in scores from another major method of predicting sugar binding regions of proteins also discussed later below.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
551 142-153 Chemical denotes sialic acid MESH:D019158
552 285-296 Chemical denotes sialic acid MESH:D019158
553 297-303 Chemical denotes glycan MESH:D011134
554 481-499 Chemical denotes sialic acid glycan
555 557-568 Chemical denotes sialic acid MESH:D019158
556 790-809 Chemical denotes sialic acid glycans
557 822-828 Chemical denotes sugars MESH:D000073893