PMC:7278327 / 3387-5075
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T19 | 34-38 | Body_part | denotes | body | http://purl.org/sig/ont/fma/fma256135 |
| T20 | 169-172 | Body_part | denotes | CNS | http://purl.org/sig/ont/fma/fma55675 |
| T21 | 217-249 | Body_part | denotes | nicotinic acetylcholine receptor | http://purl.org/sig/ont/fma/fma61796 |
| T22 | 481-484 | Body_part | denotes | CNS | http://purl.org/sig/ont/fma/fma55675 |
| T23 | 565-568 | Body_part | denotes | CNS | http://purl.org/sig/ont/fma/fma55675 |
| T24 | 581-596 | Body_part | denotes | olfactory nerve | http://purl.org/sig/ont/fma/fma46787 |
| T25 | 619-626 | Body_part | denotes | neurons | http://purl.org/sig/ont/fma/fma54527 |
| T26 | 711-731 | Body_part | denotes | olfactory epithelium | http://purl.org/sig/ont/fma/fma64803 |
| T27 | 721-731 | Body_part | denotes | epithelium | http://purl.org/sig/ont/fma/fma9639 |
| T28 | 880-887 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T29 | 962-965 | Body_part | denotes | CNS | http://purl.org/sig/ont/fma/fma55675 |
| T30 | 1633-1636 | Body_part | denotes | CNS | http://purl.org/sig/ont/fma/fma55675 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T6 | 581-596 | Body_part | denotes | olfactory nerve | http://purl.obolibrary.org/obo/UBERON_0001579 |
| T7 | 591-596 | Body_part | denotes | nerve | http://purl.obolibrary.org/obo/UBERON_0001021 |
| T8 | 711-731 | Body_part | denotes | olfactory epithelium | http://purl.obolibrary.org/obo/UBERON_0001997 |
| T9 | 721-731 | Body_part | denotes | epithelium | http://purl.obolibrary.org/obo/UBERON_0000483 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 143 | 251-256 | Gene | denotes | nAChR | Gene:1137 |
| 144 | 540-545 | Gene | denotes | nAChR | Gene:1137 |
| 145 | 808-813 | Gene | denotes | nAChR | Gene:1137 |
| 146 | 1029-1034 | Gene | denotes | nAChR | Gene:1137 |
| 147 | 1265-1270 | Gene | denotes | nAChR | Gene:1137 |
| 148 | 1674-1679 | Gene | denotes | nAChR | Gene:1137 |
| 149 | 122-134 | Species | denotes | rabies virus | Tax:11292 |
| 150 | 381-391 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 151 | 529-539 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 152 | 927-937 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 153 | 1018-1028 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 154 | 1254-1264 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 155 | 1410-1421 | Species | denotes | coronavirus | Tax:11118 |
| 156 | 1573-1583 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 157 | 136-140 | Species | denotes | RABV | Tax:11292 |
| 158 | 1509-1513 | Species | denotes | RABV | Tax:11292 |
| 159 | 227-240 | Chemical | denotes | acetylcholine | MESH:D000109 |
| 160 | 142-152 | Disease | denotes | infections | MESH:D007239 |
| 161 | 1135-1143 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 162 | 1144-1153 | Disease | denotes | infection | MESH:D007239 |
| 163 | 1299-1307 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T41 | 122-128 | Disease | denotes | rabies | http://purl.obolibrary.org/obo/MONDO_0019173 |
| T42 | 142-152 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T43 | 381-389 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T44 | 529-537 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T45 | 927-935 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T46 | 1018-1026 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T47 | 1135-1143 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T48 | 1144-1153 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T49 | 1254-1262 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T50 | 1299-1307 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T51 | 1573-1581 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T35 | 20-21 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T36 | 60-63 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T37 | 129-134 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T38 | 169-172 | http://www.ebi.ac.uk/efo/EFO_0000302 | denotes | CNS |
| T39 | 169-172 | http://www.ebi.ac.uk/efo/EFO_0000908 | denotes | CNS |
| T40 | 190-195 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T41 | 262-265 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T42 | 303-304 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T43 | 481-484 | http://www.ebi.ac.uk/efo/EFO_0000302 | denotes | CNS |
| T44 | 481-484 | http://www.ebi.ac.uk/efo/EFO_0000908 | denotes | CNS |
| T45 | 565-568 | http://www.ebi.ac.uk/efo/EFO_0000302 | denotes | CNS |
| T46 | 565-568 | http://www.ebi.ac.uk/efo/EFO_0000908 | denotes | CNS |
| T47 | 591-596 | http://purl.obolibrary.org/obo/UBERON_0001021 | denotes | nerve |
| T48 | 721-731 | http://purl.obolibrary.org/obo/UBERON_0000483 | denotes | epithelium |
| T49 | 779-783 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T50 | 962-965 | http://www.ebi.ac.uk/efo/EFO_0000302 | denotes | CNS |
| T51 | 962-965 | http://www.ebi.ac.uk/efo/EFO_0000908 | denotes | CNS |
| T52 | 976-977 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T53 | 1059-1060 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T54 | 1234-1235 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T55 | 1352-1354 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T56 | 1444-1445 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T57 | 1552-1553 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T58 | 1571-1572 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T59 | 1633-1636 | http://www.ebi.ac.uk/efo/EFO_0000302 | denotes | CNS |
| T60 | 1633-1636 | http://www.ebi.ac.uk/efo/EFO_0000908 | denotes | CNS |
| T61 | 1652-1653 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T8 | 227-240 | Chemical | denotes | acetylcholine | http://purl.obolibrary.org/obo/CHEBI_15355 |
| T9 | 871-879 | Chemical | denotes | effector | http://purl.obolibrary.org/obo/CHEBI_35224 |
| T10 | 880-887 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T11 | 1222-1230 | Chemical | denotes | nicotine | http://purl.obolibrary.org/obo/CHEBI_18723 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8 | 173-195 | http://purl.obolibrary.org/obo/GO_0046794 | denotes | transport of the virus |
| T9 | 173-182 | http://purl.obolibrary.org/obo/GO_0006810 | denotes | transport |
| T10 | 251-256 | http://purl.obolibrary.org/obo/GO_0022848 | denotes | nAChR |
| T11 | 462-471 | http://purl.obolibrary.org/obo/GO_0006810 | denotes | transport |
| T12 | 516-525 | http://purl.obolibrary.org/obo/GO_0006810 | denotes | transport |
| T13 | 540-545 | http://purl.obolibrary.org/obo/GO_0022848 | denotes | nAChR |
| T14 | 808-813 | http://purl.obolibrary.org/obo/GO_0022848 | denotes | nAChR |
| T15 | 904-913 | http://purl.obolibrary.org/obo/GO_0006810 | denotes | transport |
| T16 | 1029-1034 | http://purl.obolibrary.org/obo/GO_0022848 | denotes | nAChR |
| T17 | 1265-1270 | http://purl.obolibrary.org/obo/GO_0022848 | denotes | nAChR |
| T18 | 1674-1679 | http://purl.obolibrary.org/obo/GO_0022848 | denotes | nAChR |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18 | 0-258 | Sentence | denotes | As discussed below, a significant body of empirical studies has demonstrated that the destructive neurological effects of rabies virus (RABV) infections are mediated by CNS transport of the virus tightly bound to the nicotinic acetylcholine receptor (nAChR). |
| T19 | 259-493 | Sentence | denotes | It has also been recently hypothesized that a similar mechanism may exist to explain the multiple neurological effects of SARS-CoV-2 via binding to peripheral nAChRs followed by orthograde or retrograde transport into the CNS [10,11]. |
| T20 | 494-740 | Sentence | denotes | Potential portals for transport of SARS-CoV-2/nAChR complexes into the CNS include the olfactory nerve and primary olfactory neurons [9,12], and/or peripheral trigeminal sensory terminal structures located within the olfactory epithelium [13,14]. |
| T21 | 741-972 | Sentence | denotes | Further studies are required to fully test the hypothesis that the nAChR receptor represents an obligate biochemical chaperone or effector protein responsible for transport of infective SARS-CoV-2 particles into discrete CNS areas. |
| T22 | 973-1159 | Sentence | denotes | As a corollary, pharmacological targeting of SARS-CoV-2/nAChR complexes may represent a novel vehicle for prevention and control of neurological comorbidities of COVID-19 infection [10]. |
| T23 | 1160-1423 | Sentence | denotes | There is the potential for new clinical trials to investigate nicotine as a means of blocking SARS-CoV-2-nAChR binding to prevent or treat COVID-19 (https://www.theguardian.com/world/2020/apr/22/french-study-suggests-smokers-at-lower-risk-of-getting-coronavirus). |
| T24 | 1424-1688 | Sentence | denotes | As such, we present a critical discussion that integrates lessons learned from prior RABV research and vaccine development into a working model of a SARS-CoV-2 vaccine that selectively targets and neutralizes CNS penetration of a tightly bound viral nAChR complex. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32463026-32283006-69142628 | 628-629 | 32283006 | denotes | 9 |
| 32463026-15210938-69142629 | 630-632 | 15210938 | denotes | 12 |
| 32463026-10667995-69142630 | 733-735 | 10667995 | denotes | 13 |
| 32463026-9853116-69142631 | 736-738 | 9853116 | denotes | 14 |