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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T21 205-209 Body_part denotes back http://purl.org/sig/ont/fma/fma25056
T22 6426-6430 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T23 6434-6438 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T24 7777-7781 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T25 9902-9906 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T26 9910-9914 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T27 10445-10449 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T6 6426-6430 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T7 6434-6438 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T8 7777-7781 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T9 9902-9906 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T10 9910-9914 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T11 10445-10449 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T51 146-154 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T52 389-396 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T54 425-433 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 764-772 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T56 1469-1479 Disease denotes depression http://purl.obolibrary.org/obo/MONDO_0002050
T57 5673-5680 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T59 5740-5747 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T61 6283-6290 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T63 7491-7501 Disease denotes depression http://purl.obolibrary.org/obo/MONDO_0002050
T64 7503-7510 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T66 9144-9154 Disease denotes depression http://purl.obolibrary.org/obo/MONDO_0002050
T67 9162-9169 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T69 9210-9218 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 10686-10694 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T112 135-142 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T113 256-266 http://purl.obolibrary.org/obo/CLO_0009985 denotes as focused
T114 340-341 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 932-935 http://purl.obolibrary.org/obo/CLO_0002199 denotes car
T116 968-969 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T117 1052-1055 http://purl.obolibrary.org/obo/CLO_0002199 denotes car
T118 1311-1312 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 1569-1579 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T120 1715-1716 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T121 1785-1786 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T122 2329-2330 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T123 2380-2381 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T124 2665-2666 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 2931-2938 http://purl.obolibrary.org/obo/CLO_0009985 denotes focuses
T126 2975-2976 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T127 3169-3176 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T128 3302-3303 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T129 3550-3551 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T130 3795-3806 http://purl.obolibrary.org/obo/OBI_0000968 denotes instruments
T131 4149-4153 http://purl.obolibrary.org/obo/CLO_0008416 denotes peer
T132 4149-4153 http://purl.obolibrary.org/obo/CLO_0050081 denotes peer
T133 4497-4498 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 4650-4651 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T135 4682-4683 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 4736-4744 http://purl.obolibrary.org/obo/CLO_0008416 denotes peers or
T137 4736-4744 http://purl.obolibrary.org/obo/CLO_0050081 denotes peers or
T138 4825-4826 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T139 4904-4909 http://purl.obolibrary.org/obo/CLO_0008416 denotes peers
T140 4904-4909 http://purl.obolibrary.org/obo/CLO_0050081 denotes peers
T141 4963-4964 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T142 5055-5056 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T143 5168-5169 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T144 6426-6430 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T145 6434-6438 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T146 6508-6509 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T147 6546-6547 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T148 6676-6677 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 6759-6760 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T150 6848-6849 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T151 7371-7372 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T152 8542-8543 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T153 8902-8903 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T154 9612-9613 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T155 9902-9906 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T156 9910-9914 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T157 11210-11211 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T158 11470-11471 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T14 4129-4135 Chemical denotes formal http://purl.obolibrary.org/obo/CHEBI_48341

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T9 1517-1525 http://purl.obolibrary.org/obo/GO_0007610 denotes behavior
T10 9482-9495 http://purl.obolibrary.org/obo/GO_0007610 denotes or behavioral

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T20 389-396 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T21 398-411 Phenotype denotes panic attacks http://purl.obolibrary.org/obo/HP_0025269
T22 1469-1479 Phenotype denotes depression http://purl.obolibrary.org/obo/HP_0000716
T23 5673-5680 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T24 5740-5747 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T25 6283-6290 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T26 7491-7501 Phenotype denotes depression http://purl.obolibrary.org/obo/HP_0000716
T27 7503-7510 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T28 9144-9154 Phenotype denotes depression http://purl.obolibrary.org/obo/HP_0000716
T29 9162-9169 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T177 0-53 Sentence denotes 5.3 Lessons learned in the telepsychology transition
T178 55-79 Sentence denotes 5.3.1 Presenting issues
T179 80-311 Sentence denotes Though we anticipated that patients would be primarily focused on COVID‐19 once we resumed services, many were ready to “get back to work” on their primary issues and were not as focused on the pandemic as we had been anticipating.
T180 312-446 Sentence denotes For new referrals, however, a primary driver was often the current pandemic (anxiety, panic attacks, worry about COVID‐19 risk, etc.).
T181 447-565 Sentence denotes Common stressors for our lower‐income patients included loss of employment, or being furloughed, and financial strain.
T182 566-645 Sentence denotes The increased presence of children in the home was stressful for some families.
T183 646-782 Sentence denotes Many of our patients also had chronic health conditions and had been worried about being more vulnerable to the worst COVID‐19 outcomes.
T184 783-936 Sentence denotes In addition, some of our patients included those without consistent housing or food sources, and one reported being homeless and living out of their car.
T185 937-1090 Sentence denotes They worried about the risk of a total shutdown (e.g., not being allowed to be on the street at all, even in their car) and being unable to find shelter.
T186 1091-1234 Sentence denotes Even when working on the primary behavioral health issues that preceded the pandemic, there were new twists and problems that were exacerbated.
T187 1235-1428 Sentence denotes Of significant concern was the exacerbation of intimate partner violence as a result of the additional risk factors associated with being unable to leave the home as often and increased stress.
T188 1429-1634 Sentence denotes For our patients with substance use and depression particularly, discussing engaging in behavior substitutions and enjoyable or pleasurable activities was especially difficult with the stay‐at‐home orders.
T189 1635-1741 Sentence denotes Individuals who were trying to quit smoking often found themselves returning to a higher level of smoking.
T190 1742-1918 Sentence denotes Similarly, individuals who were working on a plan to lose weight by reducing calorie consumption and increasing exercise tended to have more difficulty adhering to those plans.
T191 1919-2169 Sentence denotes It became clear that our underserved patients with chronic conditions were being dissuaded by social distancing policies and the crisis mode of the medical community from having routine care visits with their physicians at their primary care clinics.
T192 2170-2417 Sentence denotes Combined with the reduced availability of other safety‐net services in the community (e.g., social services, food banks), many of our patients began reporting a feeling that they had been left behind or deemed a lower priority during the pandemic.
T193 2418-2650 Sentence denotes Our clinicians noted that patients often expressed relief and gratitude that we continued to be available for our usual level of services—and that we were even more accessible now that they did not need to travel to the appointment.
T194 2651-2782 Sentence denotes We found that a subset of patients actually preferred telepsychology services to the in‐person visits we had only formerly offered.
T195 2783-2895 Sentence denotes That meant we were able to reach patients who had previously declined services because of transportation issues.
T196 2896-3062 Sentence denotes One partner clinic, in particular, focuses on high utilizing patients who have a high number of chronic medical conditions (at least seven to qualify for the clinic).
T197 3063-3212 Sentence denotes Our trainees at that clinic historically had trouble getting patients to come in for longer, behaviorally focused sessions, and no‐shows were common.
T198 3213-3314 Sentence denotes After the shift to telepsychology, the number of appointments soared and no‐shows became a non‐issue.
T199 3315-3546 Sentence denotes Similarly, another clinic where the physicians are very invested in making referrals to behavioral health saw an increase in the number of patients accepting referrals because the barriers became lower for attending these sessions.
T200 3547-3667 Sentence denotes As a result of this lesson, we already plan greatly to increase our telepsychology offerings after the pandemic recedes.
T201 3668-3905 Sentence denotes We have discussed how it is probably best to have the first session occur in person, where rapport can be built and assessment instruments can be easily filled out, and then offer to hold future session on the phone or videoconferencing.
T202 3907-3925 Sentence denotes 5.3.2 Supervision
T203 3926-4035 Sentence denotes Supervision, which also shifted to strictly telephone or videoconferencing, also had to change substantially.
T204 4036-4200 Sentence denotes One of the distinct advantages of integrated primary care is the efficiency of the real‐time formal and informal peer and team supervision that occurs for trainees.
T205 4201-4424 Sentence denotes Clinicians often sit in the same space between patient visits and discuss patients among themselves, with the supervisor who is often present on site, and with the medical providers who also typically sit in the same space.
T206 4425-4590 Sentence denotes The notes of new referrals are reviewed before the session and there is a discussion with members of the trainee's “support team” about what approach might be taken.
T207 4591-4769 Sentence denotes Due to the norms of primary care, there is also the one‐of‐a‐kind opportunity to interrupt a session to step out for real‐time consultation with peers or other medical providers.
T208 4770-4927 Sentence denotes All of the advantages were upended by the shift toward a virtual team with only videoconference contact with the supervisor and other peers and team members.
T209 4928-5108 Sentence denotes With trainees operating in more of a silo when delivering care, the antithesis of what is best about integrated care, we found a need for more supervisor time per trainee and case.
T210 5109-5218 Sentence denotes We also adapted to this loss of team support by developing a parallel virtual team meeting before each shift.
T211 5219-5468 Sentence denotes Trainees connected through Zoom videoconferencing for shift check‐ins at the beginning of each shift, discussing shift responsibilities (e.g., responding to clinic messages), and ensuring that we followed through with our commitments to each clinic.
T212 5469-5641 Sentence denotes Given that the effects of the pandemic were reaching everyone across the world, we knew that our own graduate student therapists might be experiencing their own challenges.
T213 5642-5823 Sentence denotes Indeed, there was some initial anxiety about transitioning so quickly to telepsychology, but that anxiety was generally outweighed by the desire to provide services to our patients.
T214 5824-5977 Sentence denotes One strategy, which we feel aided in the transition to telepsychology, was the gradual start‐up of graduate student therapists delivering telepsychology.
T215 5978-6132 Sentence denotes We started with our most senior (fourth‐year) graduate students providing the initial telepsychology services and then started our more junior therapists.
T216 6133-6354 Sentence denotes Our staggered training plan allowed the senior graduate student therapists to work through any wrinkles in the initial plan and to decrease their own anxiety around telepsychology before starting our more novice trainees.
T217 6355-6600 Sentence denotes Additionally, it was helpful for our team to discuss the ways in which face‐to‐face and telepsychology provision of services are similar (e.g., teaching a new parenting skill and then having a caregiver brainstorm how they could use it at home).
T218 6602-6646 Sentence denotes 5.3.3 Working with children and adolescents
T219 6647-6955 Sentence denotes Delivering telepsychology to a vulnerable population, such as children and adolescents, presented our team with a unique set of challenges, which compelled our pediatric behavioral health team to make a number of operational changes, adapting to the shifting service delivery landscape at our medical center.
T220 6956-7197 Sentence denotes Our first steps in pediatrics were to check in with our medical team partners, to familiarize ourselves the new policies around pediatric well and sick visits, and to obtain their feedback on our tentative plan for telepsychology deployment.
T221 7198-7555 Sentence denotes Generally, our plan was to offer telepsychology to families referred to us via their pediatrician, with an emphasis on prioritizing those presenting problems that have been a good fit for our behavioral health services thus far: adolescents and young adults with internalizing concerns (i.e., depression, anxiety) and children with home behavioral concerns.
T222 7556-7751 Sentence denotes We hypothesized (and subsequently confirmed) that many of our patients' caregivers who had school‐related concerns would choose to pause their sessions with us, given the current school closures.
T223 7752-7814 Sentence denotes For the time being, warm hand‐offs would be suspended as well.
T224 7815-8236 Sentence denotes After conferring, our primary care psychology supervisors and medical team leaders (i.e., directors of the primary care clinics, nursing, and patient services) approved of the telepsychology plan to continue the provision of behavioral health services to pediatric patients and that we would check in regularly to discuss ongoing clinic needs and any feedback about the new pediatric primary care telepsychology services.
T225 8237-8319 Sentence denotes With the plan in place, we began to start the roll‐out of telepsychology services.
T226 8320-8657 Sentence denotes Once their telepsychology training (detailed above) was complete, our graduate student therapists began calling all patients and their caregivers on our schedule for the upcoming week to inform them that we were moving to a telepsychology model of care during the pandemic and to gauge their interest in continuing care under this model.
T227 8658-8795 Sentence denotes Many families were glad to hear from our team, but felt that behavioral health services for their child was no longer their top priority.
T228 8796-8895 Sentence denotes Approximately half of our current patient load decided to continue care with us via telepsychology.
T229 8896-9034 Sentence denotes Using a structured consent form, our team obtained and documented verbal informed consent to treat via telepsychology with these families.
T230 9035-9292 Sentence denotes Thus, our pediatric primary care psychology team delivered telepsychology services to many of our teens with depression and/or anxiety, which for some, was exacerbated by the COVID‐19 pandemic and the social distancing and stay‐at‐home orders in our locale.
T231 9293-9512 Sentence denotes Given the increased amount of time that caregivers and children were spending together due to school closings, many caregivers felt stressed and in need of stress management techniques and/or behavioral parent training.
T232 9513-9584 Sentence denotes Our team also provided those therapeutic strategies via telepsychology.
T233 9585-9734 Sentence denotes Additionally, while we had a very structured crisis management plan in place for any acute issues (e.g., suicidality), we have not yet had to use it.
T234 9735-9792 Sentence denotes Communication with our medical colleagues went very well.
T235 9793-9986 Sentence denotes We had some initial worries about not being colocated in the clinics during this time and losing some of the face‐to‐face time that had seemed vital to maintaining our presence as team members.
T236 9987-10162 Sentence denotes However, communication via secure email as well as the electronic medical records were seamless as we all worked toward the common goal of providing good family‐centered care.
T237 10163-10264 Sentence denotes Despite our successes, there were some barriers to serving our pediatric families via telepsychology.
T238 10265-10383 Sentence denotes For instance, as with our adult clinics, our patient load decreased, as many referrals were for school‐based concerns.
T239 10384-10455 Sentence denotes Additionally, we were no longer obtaining referrals via warm hand‐offs.
T240 10456-10606 Sentence denotes Also, there may have been some families who had other significant concerns (e.g., paying rent, losing their job, taking care of an ill family member).
T241 10607-10883 Sentence denotes Given that our patient population is from the communities being hardest hit by COVID‐19 (i.e., low‐income, predominantly Black/African American families), it is no surprise to us that child behavioral health concerns were not at the top of the list of priorities for families.
T242 10884-10995 Sentence denotes Providing evidence‐based services via telepsychology through our pediatric clinics presented another challenge.
T243 10996-11177 Sentence denotes It was difficult to have telepsychology sessions with caregivers who had young children, as those children were often in the room, making noise, needing their caregivers' attention.
T244 11178-11303 Sentence denotes In clinic, we were able to have a graduate student therapist assist with childcare; that is not possible with telepsychology.
T245 11304-11489 Sentence denotes Therefore, we are still navigating the best ways to provide telepsychology to parents who have more chaotic home environments (e.g., scheduling an appointment during a child's naptime).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
98 146-154 Disease denotes COVID‐19 MESH:C000657245
99 389-396 Disease denotes anxiety MESH:D001007
100 425-433 Disease denotes COVID‐19 MESH:C000657245
101 764-772 Disease denotes COVID‐19 MESH:C000657245
103 1469-1479 Disease denotes depression MESH:D000275
107 5673-5680 Disease denotes anxiety MESH:D001007
108 5740-5747 Disease denotes anxiety MESH:D001007
109 6283-6290 Disease denotes anxiety MESH:D001007
112 7491-7501 Disease denotes depression MESH:D000275
113 7503-7510 Disease denotes anxiety MESH:D001007
117 9144-9154 Disease denotes depression MESH:D000275
118 9162-9169 Disease denotes anxiety MESH:D001007
119 9210-9218 Disease denotes COVID‐19 MESH:C000657245
121 10686-10694 Disease denotes COVID‐19 MESH:C000657245