PMC:7275193 / 875-2027
Annnotations
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12 | 13-24 | NCBITaxon:11118 | denotes | Coronavirus |
T13 | 50-55 | NCBITaxon:10239 | denotes | viral |
T14 | 93-104 | UBERON:0001004 | denotes | respiratory |
T15 | 150-161 | NCBITaxon:11118 | denotes | coronavirus |
T16 | 172-184 | SP_7 | denotes | severe acute |
T17 | 185-196 | SP_7;UBERON:0001004 | denotes | respiratory |
T18 | 197-219 | SP_7 | denotes | syndrome coronavirus 2 |
T19 | 221-225 | PR:000014459;SP_7 | denotes | SARS |
T20 | 225-231 | SP_7 | denotes | -CoV-2 |
T21 | 254-263 | SP_7 | denotes | 2019-nCoV |
T22 | 489-494 | GO:0016265 | denotes | death |
T23 | 635-649 | UBERON:0004535 | denotes | cardiovascular |
T24 | 659-674 | UBERON:0002037 | denotes | cerebrovascular |
T25 | 704-713 | UBERON:0002048 | denotes | pulmonary |
T26 | 734-740 | UBERON:0002113 | denotes | kidney |
T27 | 984-992 | SP_7 | denotes | COVID-19 |
T28 | 1038-1045 | CL:0000763 | denotes | myeloid |
T29 | 1059-1068 | CHEBI:5291;CHEBI:5291 | denotes | dasatinib |
T30 | 1115-1126 | UBERON:0001004 | denotes | respiratory |
T40139 | 13-24 | NCBITaxon:11118 | denotes | Coronavirus |
T11827 | 50-55 | NCBITaxon:10239 | denotes | viral |
T97256 | 93-104 | UBERON:0001004 | denotes | respiratory |
T93166 | 150-161 | NCBITaxon:11118 | denotes | coronavirus |
T58594 | 172-184 | SP_7 | denotes | severe acute |
T35632 | 185-196 | SP_7;UBERON:0001004 | denotes | respiratory |
T83999 | 197-219 | SP_7 | denotes | syndrome coronavirus 2 |
T70732 | 221-225 | PR:000014459;SP_7 | denotes | SARS |
T70251 | 225-231 | SP_7 | denotes | -CoV-2 |
T3236 | 254-263 | SP_7 | denotes | 2019-nCoV |
T76263 | 489-494 | GO:0016265 | denotes | death |
T30120 | 635-649 | UBERON:0004535 | denotes | cardiovascular |
T5907 | 659-674 | UBERON:0002037 | denotes | cerebrovascular |
T61041 | 704-713 | UBERON:0002048 | denotes | pulmonary |
T74877 | 734-740 | UBERON:0002113 | denotes | kidney |
T48422 | 984-992 | SP_7 | denotes | COVID-19 |
T876 | 1038-1045 | CL:0000763 | denotes | myeloid |
T66773 | 1059-1068 | CHEBI:5291;CHEBI:5291 | denotes | dasatinib |
T87016 | 1115-1126 | UBERON:0001004 | denotes | respiratory |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T1 | 734-740 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 734-740 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T7 | 611-623 | Phenotype | denotes | hypertension | http://purl.obolibrary.org/obo/HP_0000822 |
T8 | 635-657 | Phenotype | denotes | cardiovascular disease | http://purl.obolibrary.org/obo/HP_0001626 |
T9 | 684-721 | Phenotype | denotes | chronic obstructive pulmonary disease | http://purl.obolibrary.org/obo/HP_0006510 |
T10 | 726-748 | Phenotype | denotes | chronic kidney disease | http://purl.obolibrary.org/obo/HP_0012622 |
T11 | 820-826 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
T12 | 879-885 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
T13 | 904-927 | Phenotype | denotes | hematological neoplasms | http://purl.obolibrary.org/obo/HP_0004377 |
T14 | 993-1002 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T15 | 1030-1054 | Phenotype | denotes | chronic myeloid leukemia | http://purl.obolibrary.org/obo/HP_0005506 |
T16 | 1099-1104 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
T17 | 1115-1135 | Phenotype | denotes | respiratory distress | http://purl.obolibrary.org/obo/HP_0002098 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T17 | 172-219 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T18 | 172-205 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T19 | 221-229 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T20 | 611-623 | Disease | denotes | hypertension | http://purl.obolibrary.org/obo/MONDO_0005044 |
T21 | 625-633 | Disease | denotes | diabetes | http://purl.obolibrary.org/obo/MONDO_0005015 |
T22 | 635-657 | Disease | denotes | cardiovascular disease | http://purl.obolibrary.org/obo/MONDO_0004995 |
T23 | 659-682 | Disease | denotes | cerebrovascular disease | http://purl.obolibrary.org/obo/MONDO_0011057 |
T24 | 684-721 | Disease | denotes | chronic obstructive pulmonary disease | http://purl.obolibrary.org/obo/MONDO_0005002 |
T25 | 704-721 | Disease | denotes | pulmonary disease | http://purl.obolibrary.org/obo/MONDO_0005275 |
T26 | 726-748 | Disease | denotes | chronic kidney disease | http://purl.obolibrary.org/obo/MONDO_0005300 |
T27 | 734-748 | Disease | denotes | kidney disease | http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240 |
T29 | 820-826 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
T30 | 879-885 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
T31 | 904-927 | Disease | denotes | hematological neoplasms | http://purl.obolibrary.org/obo/MONDO_0044881 |
T32 | 984-992 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T33 | 993-1002 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T34 | 1030-1054 | Disease | denotes | chronic myeloid leukemia | http://purl.obolibrary.org/obo/MONDO_0011996 |
T35 | 1038-1054 | Disease | denotes | myeloid leukemia | http://purl.obolibrary.org/obo/MONDO_0004643 |
T36 | 1046-1054 | Disease | denotes | leukemia | http://purl.obolibrary.org/obo/MONDO_0005059 |
T37 | 1109-1144 | Disease | denotes | acute respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0006502 |
T38 | 1115-1144 | Disease | denotes | respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0009971 |
T39 | 1146-1150 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10 | 39-40 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T11 | 131-132 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T12 | 318-319 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T13 | 389-401 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | Organization |
T14 | 414-415 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T15 | 734-740 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
T16 | 734-740 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
T17 | 734-740 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
T18 | 952-956 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 4, 5 |
T19 | 974-975 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T20 | 1006-1007 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T21 | 1020-1024 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
T22 | 1020-1024 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
T23 | 1085-1086 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T4 | 1020-1024 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
T5 | 1059-1068 | Chemical | denotes | dasatinib | http://purl.obolibrary.org/obo/CHEBI_49375|http://purl.obolibrary.org/obo/CHEBI_70839 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T8 | 0-12 | Sentence | denotes | Introduction |
T9 | 13-268 | Sentence | denotes | Coronavirus disease-19 is a pandemic viral illness that typically presents with respiratory symptoms and is caused by a newly discovered coronavirus, known as severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), previously known as 2019-nCoV [1]. |
T10 | 269-356 | Sentence | denotes | In December 2019, the outbreak started in Wuhan, a city in China, then spread globally. |
T11 | 357-429 | Sentence | denotes | In March 2020, the World Health Organization declared it a pandemic [2]. |
T12 | 430-509 | Sentence | denotes | The disease severity extends from mild to severe, and even death in some cases. |
T13 | 510-753 | Sentence | denotes | The severity and complications are more in patients with risk factors or other comorbidities such as hypertension, diabetes, cardiovascular disease, cerebrovascular disease, chronic obstructive pulmonary disease, or chronic kidney disease [3]. |
T14 | 754-958 | Sentence | denotes | Although some studies showed that the risk of complications among cancer patients is increased, the impact of the disease on cancer patients or other hematological neoplasms is still controversial [4, 5]. |
T15 | 959-1152 | Sentence | denotes | Here we report a case of COVID-19 pneumonia in a 65-year-old male with chronic myeloid leukemia, on dasatinib, complicated by a neutropenic fever and acute respiratory distress syndrome (ARDS). |
TEST0
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32547383-198-203-2084723 | 952-953 | ["32066541"] | denotes | 4 |
32547383-201-206-2084724 | 955-956 | ["32142622"] | denotes | 5 |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32547383-32066541-18888156 | 952-953 | 32066541 | denotes | 4 |
32547383-32142622-18888157 | 955-956 | 32142622 | denotes | 5 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
50 | 150-161 | Species | denotes | coronavirus | Tax:11118 |
51 | 172-219 | Species | denotes | severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
52 | 221-231 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
53 | 254-263 | Species | denotes | 2019-nCoV | Tax:2697049 |
54 | 553-561 | Species | denotes | patients | Tax:9606 |
55 | 827-835 | Species | denotes | patients | Tax:9606 |
56 | 886-894 | Species | denotes | patients | Tax:9606 |
57 | 13-35 | Disease | denotes | Coronavirus disease-19 | MESH:C000657245 |
58 | 50-63 | Disease | denotes | viral illness | |
59 | 93-113 | Disease | denotes | respiratory symptoms | MESH:D012818 |
60 | 489-494 | Disease | denotes | death | MESH:D003643 |
61 | 611-623 | Disease | denotes | hypertension | MESH:D006973 |
62 | 625-633 | Disease | denotes | diabetes | MESH:D003920 |
63 | 635-657 | Disease | denotes | cardiovascular disease | MESH:D002318 |
64 | 659-682 | Disease | denotes | cerebrovascular disease | MESH:D002561 |
65 | 684-721 | Disease | denotes | chronic obstructive pulmonary disease | MESH:D029424 |
66 | 726-748 | Disease | denotes | chronic kidney disease | MESH:D051436 |
67 | 820-826 | Disease | denotes | cancer | MESH:D009369 |
68 | 879-885 | Disease | denotes | cancer | MESH:D009369 |
69 | 904-927 | Disease | denotes | hematological neoplasms | MESH:D019337 |
76 | 1059-1068 | Chemical | denotes | dasatinib | MESH:D000069439 |
77 | 984-1002 | Disease | denotes | COVID-19 pneumonia | MESH:C000657245 |
78 | 1038-1054 | Disease | denotes | myeloid leukemia | MESH:D007951 |
79 | 1087-1104 | Disease | denotes | neutropenic fever | MESH:D005334 |
80 | 1109-1144 | Disease | denotes | acute respiratory distress syndrome | MESH:D012128 |
81 | 1146-1150 | Disease | denotes | ARDS | MESH:D012128 |