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PMC:7275193 / 875-2027 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T12 13-24 NCBITaxon:11118 denotes Coronavirus
T13 50-55 NCBITaxon:10239 denotes viral
T14 93-104 UBERON:0001004 denotes respiratory
T15 150-161 NCBITaxon:11118 denotes coronavirus
T16 172-184 SP_7 denotes severe acute
T17 185-196 SP_7;UBERON:0001004 denotes respiratory
T18 197-219 SP_7 denotes syndrome coronavirus 2
T19 221-225 PR:000014459;SP_7 denotes SARS
T20 225-231 SP_7 denotes -CoV-2
T21 254-263 SP_7 denotes 2019-nCoV
T22 489-494 GO:0016265 denotes death
T23 635-649 UBERON:0004535 denotes cardiovascular
T24 659-674 UBERON:0002037 denotes cerebrovascular
T25 704-713 UBERON:0002048 denotes pulmonary
T26 734-740 UBERON:0002113 denotes kidney
T27 984-992 SP_7 denotes COVID-19
T28 1038-1045 CL:0000763 denotes myeloid
T29 1059-1068 CHEBI:5291;CHEBI:5291 denotes dasatinib
T30 1115-1126 UBERON:0001004 denotes respiratory
T40139 13-24 NCBITaxon:11118 denotes Coronavirus
T11827 50-55 NCBITaxon:10239 denotes viral
T97256 93-104 UBERON:0001004 denotes respiratory
T93166 150-161 NCBITaxon:11118 denotes coronavirus
T58594 172-184 SP_7 denotes severe acute
T35632 185-196 SP_7;UBERON:0001004 denotes respiratory
T83999 197-219 SP_7 denotes syndrome coronavirus 2
T70732 221-225 PR:000014459;SP_7 denotes SARS
T70251 225-231 SP_7 denotes -CoV-2
T3236 254-263 SP_7 denotes 2019-nCoV
T76263 489-494 GO:0016265 denotes death
T30120 635-649 UBERON:0004535 denotes cardiovascular
T5907 659-674 UBERON:0002037 denotes cerebrovascular
T61041 704-713 UBERON:0002048 denotes pulmonary
T74877 734-740 UBERON:0002113 denotes kidney
T48422 984-992 SP_7 denotes COVID-19
T876 1038-1045 CL:0000763 denotes myeloid
T66773 1059-1068 CHEBI:5291;CHEBI:5291 denotes dasatinib
T87016 1115-1126 UBERON:0001004 denotes respiratory

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 734-740 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 734-740 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T7 611-623 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T8 635-657 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T9 684-721 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T10 726-748 Phenotype denotes chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622
T11 820-826 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T12 879-885 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T13 904-927 Phenotype denotes hematological neoplasms http://purl.obolibrary.org/obo/HP_0004377
T14 993-1002 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T15 1030-1054 Phenotype denotes chronic myeloid leukemia http://purl.obolibrary.org/obo/HP_0005506
T16 1099-1104 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T17 1115-1135 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T17 172-219 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T18 172-205 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T19 221-229 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T20 611-623 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T21 625-633 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T22 635-657 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T23 659-682 Disease denotes cerebrovascular disease http://purl.obolibrary.org/obo/MONDO_0011057
T24 684-721 Disease denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T25 704-721 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T26 726-748 Disease denotes chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T27 734-748 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T29 820-826 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T30 879-885 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T31 904-927 Disease denotes hematological neoplasms http://purl.obolibrary.org/obo/MONDO_0044881
T32 984-992 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 993-1002 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T34 1030-1054 Disease denotes chronic myeloid leukemia http://purl.obolibrary.org/obo/MONDO_0011996
T35 1038-1054 Disease denotes myeloid leukemia http://purl.obolibrary.org/obo/MONDO_0004643
T36 1046-1054 Disease denotes leukemia http://purl.obolibrary.org/obo/MONDO_0005059
T37 1109-1144 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T38 1115-1144 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T39 1146-1150 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T10 39-40 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 131-132 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 318-319 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 389-401 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T14 414-415 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 734-740 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T16 734-740 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T17 734-740 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T18 952-956 http://purl.obolibrary.org/obo/CLO_0053799 denotes 4, 5
T19 974-975 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 1006-1007 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 1020-1024 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T22 1020-1024 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T23 1085-1086 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T4 1020-1024 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T5 1059-1068 Chemical denotes dasatinib http://purl.obolibrary.org/obo/CHEBI_49375|http://purl.obolibrary.org/obo/CHEBI_70839

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T8 0-12 Sentence denotes Introduction
T9 13-268 Sentence denotes Coronavirus disease-19 is a pandemic viral illness that typically presents with respiratory symptoms and is caused by a newly discovered coronavirus, known as severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), previously known as 2019-nCoV [1].
T10 269-356 Sentence denotes In December 2019, the outbreak started in Wuhan, a city in China, then spread globally.
T11 357-429 Sentence denotes In March 2020, the World Health Organization declared it a pandemic [2].
T12 430-509 Sentence denotes The disease severity extends from mild to severe, and even death in some cases.
T13 510-753 Sentence denotes The severity and complications are more in patients with risk factors or other comorbidities such as hypertension, diabetes, cardiovascular disease, cerebrovascular disease, chronic obstructive pulmonary disease, or chronic kidney disease [3].
T14 754-958 Sentence denotes Although some studies showed that the risk of complications among cancer patients is increased, the impact of the disease on cancer patients or other hematological neoplasms is still controversial [4, 5].
T15 959-1152 Sentence denotes Here we report a case of COVID-19 pneumonia in a 65-year-old male with chronic myeloid leukemia, on dasatinib, complicated by a neutropenic fever and acute respiratory distress syndrome (ARDS).

TEST0

Id Subject Object Predicate Lexical cue
32547383-198-203-2084723 952-953 ["32066541"] denotes 4
32547383-201-206-2084724 955-956 ["32142622"] denotes 5

2_test

Id Subject Object Predicate Lexical cue
32547383-32066541-18888156 952-953 32066541 denotes 4
32547383-32142622-18888157 955-956 32142622 denotes 5

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
50 150-161 Species denotes coronavirus Tax:11118
51 172-219 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
52 221-231 Species denotes SARS-CoV-2 Tax:2697049
53 254-263 Species denotes 2019-nCoV Tax:2697049
54 553-561 Species denotes patients Tax:9606
55 827-835 Species denotes patients Tax:9606
56 886-894 Species denotes patients Tax:9606
57 13-35 Disease denotes Coronavirus disease-19 MESH:C000657245
58 50-63 Disease denotes viral illness
59 93-113 Disease denotes respiratory symptoms MESH:D012818
60 489-494 Disease denotes death MESH:D003643
61 611-623 Disease denotes hypertension MESH:D006973
62 625-633 Disease denotes diabetes MESH:D003920
63 635-657 Disease denotes cardiovascular disease MESH:D002318
64 659-682 Disease denotes cerebrovascular disease MESH:D002561
65 684-721 Disease denotes chronic obstructive pulmonary disease MESH:D029424
66 726-748 Disease denotes chronic kidney disease MESH:D051436
67 820-826 Disease denotes cancer MESH:D009369
68 879-885 Disease denotes cancer MESH:D009369
69 904-927 Disease denotes hematological neoplasms MESH:D019337
76 1059-1068 Chemical denotes dasatinib MESH:D000069439
77 984-1002 Disease denotes COVID-19 pneumonia MESH:C000657245
78 1038-1054 Disease denotes myeloid leukemia MESH:D007951
79 1087-1104 Disease denotes neutropenic fever MESH:D005334
80 1109-1144 Disease denotes acute respiratory distress syndrome MESH:D012128
81 1146-1150 Disease denotes ARDS MESH:D012128