PMC:7275193 / 2029-7456
Annnotations
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31 | 68-79 | CL:0000763 | denotes | myelogenous |
| T32 | 336-342 | UBERON:0007311 | denotes | sputum |
| T33 | 370-375 | UBERON:0001443 | denotes | chest |
| T34 | 428-432 | UBERON:0000004 | denotes | nose |
| T35 | 439-445 | UBERON:0000341 | denotes | throat |
| T36 | 455-460 | GO:0007608 | denotes | smell |
| T37 | 464-469 | GO:0050909 | denotes | taste |
| T38 | 577-585 | SP_7 | denotes | COVID-19 |
| T39 | 727-736 | CHEBI:5291;CHEBI:5291 | denotes | dasatinib |
| T40 | 893-900 | UBERON:0000175 | denotes | pleural |
| T41 | 901-909 | UBERON:0000412 | denotes | effusion |
| T42 | 934-943 | CHEBI:5291;CHEBI:5291 | denotes | dasatinib |
| T43 | 1128-1139 | UBERON:0001004 | denotes | respiratory |
| T44 | 1172-1177 | UBERON:0000948 | denotes | heart |
| T45 | 1214-1219 | UBERON:0000178 | denotes | blood |
| T46 | 1344-1348 | UBERON:0022361 | denotes | lung |
| T47 | 1578-1583 | UBERON:0002107 | denotes | liver |
| T48 | 1588-1594 | UBERON:0002113 | denotes | kidney |
| T49 | 1618-1636 | PR:000005897 | denotes | C-reactive protein |
| T50 | 1696-1701 | UBERON:0001443 | denotes | chest |
| T51 | 1725-1730 | UBERON:0000101 | denotes | lower |
| T52 | 1731-1735 | UBERON:3010752 | denotes | lobe |
| T53 | 1768-1775 | UBERON:0000175 | denotes | pleural |
| T54 | 1969-1977 | SP_7 | denotes | COVID-19 |
| T55 | 2053-2060 | UBERON:0000175 | denotes | pleural |
| T56 | 2107-2111 | UBERON:3010752 | denotes | lobe |
| T57 | 2202-2209 | UBERON:0000922;GO:0009790 | denotes | empyema |
| T58 | 2210-2219 | GO:0007492 | denotes | formation |
| T59 | 2240-2249 | UBERON:0000101 | denotes | lung lobe |
| T60 | 2312-2317 | UBERON:0000178 | denotes | blood |
| T61 | 2322-2328 | UBERON:0007311 | denotes | sputum |
| T62 | 2345-2349 | CHEBI:37527;CHEBI:37527 | denotes | acid |
| T63 | 2445-2453 | SP_7 | denotes | COVID-19 |
| T64 | 2483-2501 | CHEBI:5801;DG_20;CHEBI:5801 | denotes | hydroxychloroquine |
| T65 | 2523-2535 | CHEBI:2955;DG_6;CHEBI:2955 | denotes | azithromycin |
| T66 | 2555-2566 | CHEBI:7798;CHEBI:7798 | denotes | oseltamivir |
| T67 | 2602-2610 | SP_7 | denotes | COVID-19 |
| T68 | 2636-2648 | CHEBI:8232;CHEBI:8232 | denotes | piperacillin |
| T69 | 2685-2694 | CHEBI:5291;CHEBI:5291 | denotes | Dasatinib |
| T70 | 2762-2777 | UBERON:0000915;GO:0001966 | denotes | thoracocentesis |
| T71 | 2870-2883 | UBERON:0001087 | denotes | Pleural fluid |
| T72 | 2910-2921 | CL:0000542 | denotes | lymphocytic |
| T73 | 2922-2929 | UBERON:0000175 | denotes | pleural |
| T74 | 2930-2938 | UBERON:0004821 | denotes | effusion |
| T75 | 2952-2956 | CHEBI:37527;CHEBI:37527 | denotes | acid |
| T76 | 3214-3225 | UBERON:0001004 | denotes | respiratory |
| T77 | 3272-3277 | UBERON:0000948 | denotes | heart |
| T78 | 3478-3483 | UBERON:0006314 | denotes | fluid |
| T79 | 3494-3508 | UBERON:0013755 | denotes | Arterial blood |
| T80 | 3598-3602 | CHEBI:17544;CHEBI:17544 | denotes | HCO3 |
| T81 | 3641-3645 | CHEBI:16526;CHEBI:16526 | denotes | pCO2 |
| T82 | 3711-3721 | CHEBI:32111;CHEBI:32111 | denotes | salbutamol |
| T83 | 3785-3790 | UBERON:0001443 | denotes | chest |
| T84 | 3903-3907 | CHEBI:16526;CHEBI:16526 | denotes | FiO2 |
| T85 | 3914-3921 | UBERON:0000948 | denotes | Cardiac |
| T86 | 4047-4059 | CHEBI:17855;CHEBI:17855 | denotes | triglyceride |
| T87 | 4226-4234 | SP_7 | denotes | COVID-19 |
| T88 | 4328-4337 | CHEBI:45409;DG_30;CHEBI:45409 | denotes | ritonavir |
| T89 | 4343-4352 | CHEBI:31781;DG_23;CHEBI:31781 | denotes | lopinavir |
| T90 | 4386-4397 | DG_35 | denotes | tocilizumab |
| T91 | 4427-4445 | DG_36 | denotes | methylprednisolone |
| T92 | 4629-4633 | UBERON:0001456 | denotes | face |
| T93 | 4764-4769 | UBERON:0001443 | denotes | chest |
| T94 | 4813-4817 | UBERON:0022361 | denotes | lung |
| T95 | 4818-4823 | UBERON:0007688 | denotes | field |
| T96 | 4894-4902 | UBERON:0001005 | denotes | airspace |
| T97 | 4926-4933 | UBERON:0000175 | denotes | pleural |
| T98 | 4934-4942 | UBERON:0004821 | denotes | effusion |
| T99 | 4992-5003 | UBERON:0006518 | denotes | right lower |
| T100 | 5004-5008 | UBERON:0002048 | denotes | lung |
| T101 | 5103-5107 | CHEBI:51461;CHEBI:51461 | denotes | SpO2 |
| T102 | 5236-5245 | CHEBI:5291;CHEBI:5291 | denotes | dasatinib |
| T87066 | 68-79 | CL:0000763 | denotes | myelogenous |
| T66593 | 336-342 | UBERON:0007311 | denotes | sputum |
| T39725 | 370-375 | UBERON:0001443 | denotes | chest |
| T86265 | 428-432 | UBERON:0000004 | denotes | nose |
| T28470 | 439-445 | UBERON:0000341 | denotes | throat |
| T22437 | 455-460 | GO:0007608 | denotes | smell |
| T21556 | 464-469 | GO:0050909 | denotes | taste |
| T93777 | 577-585 | SP_7 | denotes | COVID-19 |
| T21158 | 727-736 | CHEBI:5291;CHEBI:5291 | denotes | dasatinib |
| T13795 | 893-900 | UBERON:0000175 | denotes | pleural |
| T42850 | 901-909 | UBERON:0000412 | denotes | effusion |
| T32446 | 934-943 | CHEBI:5291;CHEBI:5291 | denotes | dasatinib |
| T27300 | 1128-1139 | UBERON:0001004 | denotes | respiratory |
| T43042 | 1172-1177 | UBERON:0000948 | denotes | heart |
| T94509 | 1214-1219 | UBERON:0000178 | denotes | blood |
| T51255 | 1344-1348 | UBERON:0022361 | denotes | lung |
| T55270 | 1578-1583 | UBERON:0002107 | denotes | liver |
| T16248 | 1588-1594 | UBERON:0002113 | denotes | kidney |
| T56522 | 1618-1636 | PR:000005897 | denotes | C-reactive protein |
| T31758 | 1696-1701 | UBERON:0001443 | denotes | chest |
| T52706 | 1725-1730 | UBERON:0000101 | denotes | lower |
| T42231 | 1731-1735 | UBERON:3010752 | denotes | lobe |
| T37353 | 1768-1775 | UBERON:0000175 | denotes | pleural |
| T43144 | 1969-1977 | SP_7 | denotes | COVID-19 |
| T96450 | 2053-2060 | UBERON:0000175 | denotes | pleural |
| T65828 | 2107-2111 | UBERON:3010752 | denotes | lobe |
| T25744 | 2202-2209 | UBERON:0000922;GO:0009790 | denotes | empyema |
| T2543 | 2210-2219 | GO:0007492 | denotes | formation |
| T24147 | 2240-2249 | UBERON:0000101 | denotes | lung lobe |
| T49310 | 2312-2317 | UBERON:0000178 | denotes | blood |
| T46406 | 2322-2328 | UBERON:0007311 | denotes | sputum |
| T77011 | 2345-2349 | CHEBI:37527;CHEBI:37527 | denotes | acid |
| T361 | 2445-2453 | SP_7 | denotes | COVID-19 |
| T23067 | 2483-2501 | CHEBI:5801;DG_20;CHEBI:5801 | denotes | hydroxychloroquine |
| T8022 | 2523-2535 | CHEBI:2955;DG_6;CHEBI:2955 | denotes | azithromycin |
| T33624 | 2555-2566 | CHEBI:7798;CHEBI:7798 | denotes | oseltamivir |
| T35050 | 2602-2610 | SP_7 | denotes | COVID-19 |
| T14280 | 2636-2648 | CHEBI:8232;CHEBI:8232 | denotes | piperacillin |
| T87953 | 2685-2694 | CHEBI:5291;CHEBI:5291 | denotes | Dasatinib |
| T21077 | 2762-2777 | UBERON:0000915;GO:0001966 | denotes | thoracocentesis |
| T18609 | 2870-2883 | UBERON:0001087 | denotes | Pleural fluid |
| T24995 | 2910-2921 | CL:0000542 | denotes | lymphocytic |
| T5840 | 2922-2929 | UBERON:0000175 | denotes | pleural |
| T62744 | 2930-2938 | UBERON:0004821 | denotes | effusion |
| T32824 | 2952-2956 | CHEBI:37527;CHEBI:37527 | denotes | acid |
| T14628 | 3214-3225 | UBERON:0001004 | denotes | respiratory |
| T3743 | 3272-3277 | UBERON:0000948 | denotes | heart |
| T4522 | 3478-3483 | UBERON:0006314 | denotes | fluid |
| T54689 | 3494-3508 | UBERON:0013755 | denotes | Arterial blood |
| T21668 | 3598-3602 | CHEBI:17544;CHEBI:17544 | denotes | HCO3 |
| T91910 | 3641-3645 | CHEBI:16526;CHEBI:16526 | denotes | pCO2 |
| T10372 | 3711-3721 | CHEBI:32111;CHEBI:32111 | denotes | salbutamol |
| T15232 | 3785-3790 | UBERON:0001443 | denotes | chest |
| T98635 | 3903-3907 | CHEBI:16526;CHEBI:16526 | denotes | FiO2 |
| T55307 | 3914-3921 | UBERON:0000948 | denotes | Cardiac |
| T44372 | 4047-4059 | CHEBI:17855;CHEBI:17855 | denotes | triglyceride |
| T69104 | 4226-4234 | SP_7 | denotes | COVID-19 |
| T95417 | 4328-4337 | CHEBI:45409;DG_30;CHEBI:45409 | denotes | ritonavir |
| T91340 | 4343-4352 | CHEBI:31781;DG_23;CHEBI:31781 | denotes | lopinavir |
| T62090 | 4386-4397 | DG_35 | denotes | tocilizumab |
| T45712 | 4427-4445 | DG_36 | denotes | methylprednisolone |
| T7248 | 4629-4633 | UBERON:0001456 | denotes | face |
| T89775 | 4764-4769 | UBERON:0001443 | denotes | chest |
| T94207 | 4813-4817 | UBERON:0022361 | denotes | lung |
| T84143 | 4818-4823 | UBERON:0007688 | denotes | field |
| T81244 | 4894-4902 | UBERON:0001005 | denotes | airspace |
| T25849 | 4926-4933 | UBERON:0000175 | denotes | pleural |
| T95959 | 4934-4942 | UBERON:0004821 | denotes | effusion |
| T73740 | 4992-5003 | UBERON:0006518 | denotes | right lower |
| T27145 | 5004-5008 | UBERON:0002048 | denotes | lung |
| T29845 | 5103-5107 | CHEBI:51461;CHEBI:51461 | denotes | SpO2 |
| T98238 | 5236-5245 | CHEBI:5291;CHEBI:5291 | denotes | dasatinib |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T2 | 336-342 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T3 | 370-375 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T4 | 428-432 | Body_part | denotes | nose | http://purl.org/sig/ont/fma/fma46472 |
| T5 | 439-445 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
| T6 | 1172-1177 | Body_part | denotes | heart | http://purl.org/sig/ont/fma/fma7088 |
| T7 | 1214-1219 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T8 | 1344-1348 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T9 | 1578-1583 | Body_part | denotes | liver | http://purl.org/sig/ont/fma/fma7197 |
| T10 | 1588-1594 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T11 | 1629-1636 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T12 | 1696-1701 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T13 | 1990-1994 | Body_part | denotes | back | http://purl.org/sig/ont/fma/fma25056 |
| T14 | 2005-2010 | Body_part | denotes | Chest | http://purl.org/sig/ont/fma/fma9576 |
| T15 | 2240-2244 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T16 | 2312-2317 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T17 | 2322-2328 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T18 | 2870-2883 | Body_part | denotes | Pleural fluid | http://purl.org/sig/ont/fma/fma12273 |
| T19 | 2910-2921 | Body_part | denotes | lymphocytic | http://purl.org/sig/ont/fma/fma62863 |
| T20 | 3167-3171 | Body_part | denotes | back | http://purl.org/sig/ont/fma/fma25056 |
| T21 | 3272-3277 | Body_part | denotes | heart | http://purl.org/sig/ont/fma/fma7088 |
| T22 | 3397-3402 | Body_part | denotes | Chest | http://purl.org/sig/ont/fma/fma9576 |
| T23 | 3494-3508 | Body_part | denotes | Arterial blood | http://purl.org/sig/ont/fma/fma83066 |
| T24 | 3785-3790 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T25 | 4290-4298 | Body_part | denotes | cytokine | http://purl.org/sig/ont/fma/fma84050 |
| T26 | 4612-4616 | Body_part | denotes | back | http://purl.org/sig/ont/fma/fma25056 |
| T27 | 4629-4633 | Body_part | denotes | face | http://purl.org/sig/ont/fma/fma24728 |
| T28 | 4764-4769 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T29 | 4813-4817 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T30 | 4992-5013 | Body_part | denotes | right lower lung zone | http://purl.org/sig/ont/fma/fma57885 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T2 | 336-342 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T3 | 370-375 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T4 | 428-432 | Body_part | denotes | nose | http://purl.obolibrary.org/obo/UBERON_0000004 |
| T5 | 439-445 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
| T6 | 893-909 | Body_part | denotes | pleural effusion | http://purl.obolibrary.org/obo/UBERON_0000175 |
| T7 | 1172-1177 | Body_part | denotes | heart | http://purl.obolibrary.org/obo/UBERON_0000948 |
| T8 | 1214-1219 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T9 | 1344-1355 | Body_part | denotes | lung fields | http://purl.obolibrary.org/obo/UBERON_0022361 |
| T10 | 1344-1348 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T11 | 1578-1583 | Body_part | denotes | liver | http://purl.obolibrary.org/obo/UBERON_0002107 |
| T12 | 1588-1594 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T13 | 1696-1701 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T14 | 1731-1735 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T15 | 1768-1784 | Body_part | denotes | pleural effusion | http://purl.obolibrary.org/obo/UBERON_0000175 |
| T16 | 2005-2010 | Body_part | denotes | Chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T17 | 2053-2070 | Body_part | denotes | pleural effusions | http://purl.obolibrary.org/obo/UBERON_0000175 |
| T18 | 2107-2111 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T19 | 2240-2244 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T20 | 2245-2249 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T21 | 2312-2317 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T22 | 2322-2328 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T23 | 2870-2883 | Body_part | denotes | Pleural fluid | http://purl.obolibrary.org/obo/UBERON_0001087 |
| T24 | 2922-2938 | Body_part | denotes | pleural effusion | http://purl.obolibrary.org/obo/UBERON_0000175 |
| T25 | 3272-3277 | Body_part | denotes | heart | http://purl.obolibrary.org/obo/UBERON_0000948 |
| T26 | 3397-3402 | Body_part | denotes | Chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T27 | 3494-3508 | Body_part | denotes | Arterial blood | http://purl.obolibrary.org/obo/UBERON_0013755 |
| T28 | 3503-3508 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T29 | 3785-3790 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T30 | 4629-4633 | Body_part | denotes | face | http://purl.obolibrary.org/obo/UBERON_0001456 |
| T31 | 4764-4769 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T32 | 4813-4823 | Body_part | denotes | lung field | http://purl.obolibrary.org/obo/UBERON_0022361 |
| T33 | 4813-4817 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T34 | 4926-4942 | Body_part | denotes | pleural effusion | http://purl.obolibrary.org/obo/UBERON_0000175 |
| T35 | 5004-5008 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T18 | 60-88 | Phenotype | denotes | chronic myelogenous leukemia | http://purl.obolibrary.org/obo/HP_0005506 |
| T19 | 224-243 | Phenotype | denotes | shortness of breath | http://purl.obolibrary.org/obo/HP_0002098 |
| T20 | 286-302 | Phenotype | denotes | productive cough | http://purl.obolibrary.org/obo/HP_0031245 |
| T21 | 370-380 | Phenotype | denotes | chest pain | http://purl.obolibrary.org/obo/HP_0100749 |
| T22 | 422-432 | Phenotype | denotes | runny nose | http://purl.obolibrary.org/obo/HP_0031417 |
| T23 | 434-445 | Phenotype | denotes | sore throat | http://purl.obolibrary.org/obo/HP_0033050 |
| T24 | 447-460 | Phenotype | denotes | loss of smell | http://purl.obolibrary.org/obo/HP_0000458 |
| T25 | 483-491 | Phenotype | denotes | sweating | http://purl.obolibrary.org/obo/HP_0000975 |
| T26 | 496-507 | Phenotype | denotes | weight loss | http://purl.obolibrary.org/obo/HP_0001824 |
| T27 | 783-795 | Phenotype | denotes | pancytopenia | http://purl.obolibrary.org/obo/HP_0001876 |
| T28 | 893-909 | Phenotype | denotes | pleural effusion | http://purl.obolibrary.org/obo/HP_0002202 |
| T29 | 1370-1381 | Phenotype | denotes | crepitation | http://purl.obolibrary.org/obo/HP_0030830 |
| T30 | 1519-1531 | Phenotype | denotes | pancytopenia | http://purl.obolibrary.org/obo/HP_0001876 |
| T31 | 1556-1572 | Phenotype | denotes | elevated D-dimer | http://purl.obolibrary.org/obo/HP_0033106 |
| T32 | 1768-1784 | Phenotype | denotes | pleural effusion | http://purl.obolibrary.org/obo/HP_0002202 |
| T33 | 2053-2070 | Phenotype | denotes | pleural effusions | http://purl.obolibrary.org/obo/HP_0002202 |
| T34 | 2435-2440 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T35 | 2922-2938 | Phenotype | denotes | pleural effusion | http://purl.obolibrary.org/obo/HP_0002202 |
| T36 | 3146-3153 | Phenotype | denotes | dyspnea | http://purl.obolibrary.org/obo/HP_0002094 |
| T37 | 3441-3449 | Phenotype | denotes | crackles | http://purl.obolibrary.org/obo/HP_0030830 |
| T38 | 4235-4244 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T39 | 4290-4304 | Phenotype | denotes | cytokine storm | http://purl.obolibrary.org/obo/HP_0033041 |
| T40 | 4926-4942 | Phenotype | denotes | pleural effusion | http://purl.obolibrary.org/obo/HP_0002202 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T40 | 42-88 | Disease | denotes | accelerated phase chronic myelogenous leukemia | http://purl.obolibrary.org/obo/MONDO_0021367 |
| T41 | 60-88 | Disease | denotes | chronic myelogenous leukemia | http://purl.obolibrary.org/obo/MONDO_0011996 |
| T42 | 68-88 | Disease | denotes | myelogenous leukemia | http://purl.obolibrary.org/obo/MONDO_0004643 |
| T43 | 80-88 | Disease | denotes | leukemia | http://purl.obolibrary.org/obo/MONDO_0005059 |
| T44 | 93-96 | Disease | denotes | CML | http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996 |
| T46 | 273-275 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T47 | 422-432 | Disease | denotes | runny nose | http://purl.obolibrary.org/obo/MONDO_0003014 |
| T48 | 434-445 | Disease | denotes | sore throat | http://purl.obolibrary.org/obo/MONDO_0002258 |
| T49 | 577-585 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T50 | 620-623 | Disease | denotes | CML | http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996 |
| T52 | 696-699 | Disease | denotes | ABL | http://purl.obolibrary.org/obo/MONDO_0008692 |
| T53 | 717-719 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T54 | 776-778 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T55 | 783-795 | Disease | denotes | pancytopenia | http://purl.obolibrary.org/obo/MONDO_0001529 |
| T56 | 848-850 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T57 | 994-996 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T58 | 1519-1531 | Disease | denotes | pancytopenia | http://purl.obolibrary.org/obo/MONDO_0001529 |
| T59 | 1969-1977 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T60 | 2202-2209 | Disease | denotes | empyema | http://purl.obolibrary.org/obo/MONDO_0005242|http://purl.obolibrary.org/obo/MONDO_0018667 |
| T62 | 2445-2453 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T63 | 2602-2610 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T64 | 3006-3008 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T65 | 3033-3035 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T66 | 3091-3093 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T67 | 3139-3141 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T68 | 3953-3955 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T69 | 3970-3974 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T70 | 3995-3997 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T71 | 4156-4174 | Disease | denotes | infectious disease | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T72 | 4226-4234 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T73 | 4235-4244 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T74 | 4260-4264 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T75 | 4553-4555 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T76 | 4597-4599 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T77 | 5068-5070 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T78 | 5196-5198 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24 | 18-19 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T25 | 32-36 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
| T26 | 32-36 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
| T27 | 90-92 | http://purl.obolibrary.org/obo/CLO_0001547 | denotes | AP |
| T28 | 141-144 | http://purl.obolibrary.org/obo/CLO_0001577 | denotes | a 3 |
| T29 | 284-285 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T30 | 308-309 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T31 | 370-375 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T32 | 385-386 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T33 | 428-432 | http://www.ebi.ac.uk/efo/EFO_0000828 | denotes | nose |
| T34 | 617-619 | http://purl.obolibrary.org/obo/CLO_0001547 | denotes | AP |
| T35 | 855-856 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T36 | 893-909 | http://purl.obolibrary.org/obo/UBERON_0000175 | denotes | pleural effusion |
| T37 | 1089-1091 | http://purl.obolibrary.org/obo/CLO_0001527 | denotes | 94 |
| T38 | 1104-1105 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T39 | 1126-1127 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T40 | 1170-1171 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T41 | 1172-1177 | http://purl.obolibrary.org/obo/UBERON_0000948 | denotes | heart |
| T42 | 1172-1177 | http://purl.obolibrary.org/obo/UBERON_0007100 | denotes | heart |
| T43 | 1172-1177 | http://purl.obolibrary.org/obo/UBERON_0015228 | denotes | heart |
| T44 | 1172-1177 | http://www.ebi.ac.uk/efo/EFO_0000815 | denotes | heart |
| T45 | 1212-1213 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T46 | 1214-1219 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T47 | 1214-1219 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T48 | 1344-1348 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T49 | 1344-1348 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T50 | 1349-1355 | http://purl.obolibrary.org/obo/UBERON_0007688 | denotes | fields |
| T51 | 1361-1362 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T52 | 1578-1583 | http://purl.obolibrary.org/obo/UBERON_0002107 | denotes | liver |
| T53 | 1578-1583 | http://www.ebi.ac.uk/efo/EFO_0000887 | denotes | liver |
| T54 | 1588-1594 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T55 | 1588-1594 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T56 | 1588-1594 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T57 | 1696-1701 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T58 | 1768-1784 | http://purl.obolibrary.org/obo/UBERON_0000175 | denotes | pleural effusion |
| T59 | 1954-1960 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T60 | 2005-2010 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | Chest |
| T61 | 2053-2070 | http://purl.obolibrary.org/obo/UBERON_0000175 | denotes | pleural effusions |
| T62 | 2155-2156 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T63 | 2240-2244 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T64 | 2240-2244 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T65 | 2282-2286 | http://purl.obolibrary.org/obo/CLO_0001302 | denotes | 3, 4 |
| T66 | 2312-2317 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T67 | 2312-2317 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T68 | 2848-2849 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T69 | 2922-2938 | http://purl.obolibrary.org/obo/UBERON_0000175 | denotes | pleural effusion |
| T70 | 3272-3277 | http://purl.obolibrary.org/obo/UBERON_0000948 | denotes | heart |
| T71 | 3272-3277 | http://purl.obolibrary.org/obo/UBERON_0007100 | denotes | heart |
| T72 | 3272-3277 | http://purl.obolibrary.org/obo/UBERON_0015228 | denotes | heart |
| T73 | 3272-3277 | http://www.ebi.ac.uk/efo/EFO_0000815 | denotes | heart |
| T74 | 3392-3394 | http://purl.obolibrary.org/obo/CLO_0001527 | denotes | 94 |
| T75 | 3397-3402 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | Chest |
| T76 | 3494-3502 | http://purl.obolibrary.org/obo/UBERON_0001637 | denotes | Arterial |
| T77 | 3494-3502 | http://www.ebi.ac.uk/efo/EFO_0000814 | denotes | Arterial |
| T78 | 3503-3508 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T79 | 3503-3508 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T80 | 3561-3564 | http://purl.obolibrary.org/obo/CLO_0008477 | denotes | pO2 |
| T81 | 3633-3635 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T82 | 3646-3648 | http://purl.obolibrary.org/obo/CLO_0001302 | denotes | 34 |
| T83 | 3670-3672 | http://purl.obolibrary.org/obo/CLO_0001000 | denotes | 35 |
| T84 | 3673-3675 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
| T85 | 3785-3790 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T86 | 4209-4210 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T87 | 4288-4289 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T88 | 4490-4493 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T89 | 4540-4541 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T90 | 4620-4621 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T91 | 4629-4633 | http://purl.obolibrary.org/obo/UBERON_0001456 | denotes | face |
| T92 | 4675-4678 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T93 | 4732-4735 | http://purl.obolibrary.org/obo/CLO_0008477 | denotes | pO2 |
| T94 | 4764-4769 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T95 | 4813-4817 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T96 | 4813-4817 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T97 | 4818-4823 | http://purl.obolibrary.org/obo/UBERON_0007688 | denotes | field |
| T98 | 4926-4942 | http://purl.obolibrary.org/obo/UBERON_0000175 | denotes | pleural effusion |
| T99 | 5004-5008 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T100 | 5004-5008 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T101 | 5071-5074 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T102 | 5246-5249 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T7 | 32-36 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
| T8 | 90-92 | Chemical | denotes | AP | http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686 |
| T11 | 617-619 | Chemical | denotes | AP | http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686 |
| T14 | 696-699 | Chemical | denotes | ABL | http://purl.obolibrary.org/obo/CHEBI_30805 |
| T15 | 727-736 | Chemical | denotes | dasatinib | http://purl.obolibrary.org/obo/CHEBI_49375|http://purl.obolibrary.org/obo/CHEBI_70839 |
| T17 | 934-943 | Chemical | denotes | dasatinib | http://purl.obolibrary.org/obo/CHEBI_49375|http://purl.obolibrary.org/obo/CHEBI_70839 |
| T19 | 1061-1067 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
| T20 | 1242-1244 | Chemical | denotes | Hg | http://purl.obolibrary.org/obo/CHEBI_16170|http://purl.obolibrary.org/obo/CHEBI_25195 |
| T22 | 1543-1546 | Chemical | denotes | PTT | http://purl.obolibrary.org/obo/CHEBI_3088 |
| T23 | 1629-1636 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T24 | 2345-2349 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T25 | 2483-2501 | Chemical | denotes | hydroxychloroquine | http://purl.obolibrary.org/obo/CHEBI_5801 |
| T26 | 2523-2535 | Chemical | denotes | azithromycin | http://purl.obolibrary.org/obo/CHEBI_2955 |
| T27 | 2555-2566 | Chemical | denotes | oseltamivir | http://purl.obolibrary.org/obo/CHEBI_7798 |
| T28 | 2636-2648 | Chemical | denotes | piperacillin | http://purl.obolibrary.org/obo/CHEBI_8232 |
| T29 | 2649-2659 | Chemical | denotes | tazobactam | http://purl.obolibrary.org/obo/CHEBI_9421 |
| T30 | 2952-2956 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T31 | 3044-3050 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
| T32 | 3325-3331 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
| T33 | 3571-3573 | Chemical | denotes | Hg | http://purl.obolibrary.org/obo/CHEBI_16170|http://purl.obolibrary.org/obo/CHEBI_25195 |
| T35 | 3652-3654 | Chemical | denotes | Hg | http://purl.obolibrary.org/obo/CHEBI_16170|http://purl.obolibrary.org/obo/CHEBI_25195 |
| T37 | 3700-3706 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
| T38 | 3895-3901 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
| T39 | 4047-4059 | Chemical | denotes | triglyceride | http://purl.obolibrary.org/obo/CHEBI_17855 |
| T40 | 4328-4337 | Chemical | denotes | ritonavir | http://purl.obolibrary.org/obo/CHEBI_45409 |
| T41 | 4343-4352 | Chemical | denotes | lopinavir | http://purl.obolibrary.org/obo/CHEBI_31781 |
| T42 | 4386-4397 | Chemical | denotes | tocilizumab | http://purl.obolibrary.org/obo/CHEBI_64360 |
| T43 | 4427-4445 | Chemical | denotes | methylprednisolone | http://purl.obolibrary.org/obo/CHEBI_6888 |
| T44 | 4668-4674 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
| T45 | 4744-4746 | Chemical | denotes | Hg | http://purl.obolibrary.org/obo/CHEBI_16170|http://purl.obolibrary.org/obo/CHEBI_25195 |
| T47 | 5236-5245 | Chemical | denotes | dasatinib | http://purl.obolibrary.org/obo/CHEBI_49375|http://purl.obolibrary.org/obo/CHEBI_70839 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 464-469 | http://purl.obolibrary.org/obo/GO_0050909 | denotes | taste |
| T2 | 2210-2219 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | formation |
| T3 | 2302-2308 | http://purl.obolibrary.org/obo/GO_0040007 | denotes | growth |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16 | 0-17 | Sentence | denotes | Case Presentation |
| T17 | 18-266 | Sentence | denotes | A 65-year-old male with accelerated phase chronic myelogenous leukemia (AP-CML) presented to the emergency department with a 3-day history of febrile sensation (not measured by the patient) and progressive shortness of breath, mainly with exertion. |
| T18 | 267-396 | Sentence | denotes | Also, he had had a productive cough with a small amount of yellowish sputum and intermittent pleuritic chest pain for a few days. |
| T19 | 397-508 | Sentence | denotes | He denied any history of runny nose, sore throat, loss of smell or taste sense, night sweating, or weight loss. |
| T20 | 509-605 | Sentence | denotes | There was no history of contact with sick patients, especially with COVID-19, nor recent travel. |
| T21 | 606-841 | Sentence | denotes | He had had AP-CML for 4 years, currently in major molecular remission, and the latest BCR-ABL level was 0.04%; he was on dasatinib 140 mg but decreased to 100 mg because he had pancytopenia, which was resolved after adjusting the dose. |
| T22 | 842-953 | Sentence | denotes | Also, he had a chronic right-sided small loculated pleural effusion which was attributed to dasatinib (Fig. 1). |
| T23 | 954-1050 | Sentence | denotes | On arrival to the emergency department, he was febrile, and his recorded temperature was 38.4°C. |
| T24 | 1051-1245 | Sentence | denotes | He had an oxygen saturation (SpO2) of 94% on 6 L via a nonrebreather mask, a respiratory rate of 19 breath per minute, a heart rate of 104 beats per minute, and a blood pressure of 138/79 mm Hg. |
| T25 | 1246-1291 | Sentence | denotes | He was conscious, oriented, and feeling well. |
| T26 | 1292-1417 | Sentence | denotes | Breath sounds were decreased on the bilateral lower lung fields with a coarse crepitation in the right middle to lower zones. |
| T27 | 1418-1468 | Sentence | denotes | The examination of other systems was unremarkable. |
| T28 | 1469-1573 | Sentence | denotes | Laboratory findings (on the admission day) showed pancytopenia, increased PTT, INR and elevated D-dimer. |
| T29 | 1574-1617 | Sentence | denotes | The liver and kidney functions were normal. |
| T30 | 1618-1691 | Sentence | denotes | C-reactive protein level was elevated and LDH level was normal (Table 1). |
| T31 | 1692-1864 | Sentence | denotes | The chest X-ray showed bilateral lower lobe collapse and consolidation with pleural effusion, more noted on the left side, which is increased compared to baseline (Fig. 2). |
| T32 | 1865-2004 | Sentence | denotes | Considering the patient's background, clinical presentation and the current pandemic, we tested him for COVID-19 and it came back positive. |
| T33 | 2005-2288 | Sentence | denotes | Chest computed tomography (CT) showed bilateral pleural effusions evident on the left side with lower lobe subsegmental collapse and consolidation as a consequence as well as likely right anterior empyema formation and bilateral lower lung lobe post-inflammatory changes (Fig. 3, 4). |
| T34 | 2289-2338 | Sentence | denotes | There was no growth in blood nor sputum cultures. |
| T35 | 2339-2392 | Sentence | denotes | Also, acid fast bacilli smears and PCR were negative. |
| T36 | 2393-2684 | Sentence | denotes | The patient was admitted with neutropenic fever and COVID-19 and was initially started on hydroxychloroquine 400 mg orally daily, azithromycin 500 mg p.o. daily, oseltamivir 150 mg p.o. b.i.d., based on local COVID-19 management protocol, and piperacillin/tazobactam 4,500 mg i.v. every 8 h. |
| T37 | 2685-2750 | Sentence | denotes | Dasatinib was kept on hold as recommended by the hematology team. |
| T38 | 2751-2869 | Sentence | denotes | Diagnostic thoracocentesis was done to rule out other underlying causes, 500 mL was removed, and a drain was inserted. |
| T39 | 2870-2995 | Sentence | denotes | Pleural fluid analysis showed exudative lymphocytic pleural effusion and negative acid fast bacilli smears, PCR and cultures. |
| T40 | 2996-3081 | Sentence | denotes | On day 4, he started to improve, and he was off oxygen; his SpO2 was 95% on room air. |
| T41 | 3082-3128 | Sentence | denotes | However, he became more neutropenic (Table 2). |
| T42 | 3129-3231 | Sentence | denotes | On day 8, he had dyspnea after coming back from the bathroom, and became tachypneic (respiratory rate: |
| T43 | 3232-3283 | Sentence | denotes | 43 breaths per minute) and tachycardic (heart rate: |
| T44 | 3284-3396 | Sentence | denotes | 115 beats per minute), requiring 10 L of oxygen via the nonrebreather mask to maintain his SpO2 level above 94%. |
| T45 | 3397-3493 | Sentence | denotes | Chest auscultation showed diffuse bilateral crackles, and there were no signs of fluid overload. |
| T46 | 3494-3548 | Sentence | denotes | Arterial blood gas results were pH 7.48 (normal range: |
| T47 | 3549-3588 | Sentence | denotes | 7.35–7.45), pO2 63 mm Hg (normal range: |
| T48 | 3589-3629 | Sentence | denotes | 83–108), HCO3 27.4 mmol/L (normal range: |
| T49 | 3630-3669 | Sentence | denotes | 23–27) and pCO2 34 mm Hg (normal range: |
| T50 | 3670-3677 | Sentence | denotes | 35–45). |
| T51 | 3678-3771 | Sentence | denotes | The patient was given oxygen and salbutamol nebulization but without significant improvement. |
| T52 | 3772-3884 | Sentence | denotes | The repeated chest X-ray (Fig. 5) showed bilateral infiltrations and his calculated PaO2/FiO2 ratio = 143 (PaO2: |
| T53 | 3885-3913 | Sentence | denotes | 63 on 6 L oxygen, FiO2 44%). |
| T54 | 3914-3984 | Sentence | denotes | Cardiac causes have been ruled out, so he fulfilled the ARDS criteria. |
| T55 | 3985-4091 | Sentence | denotes | Moreover, he was still neutropenic, and his ferritin, LDH and triglyceride levels were elevated (Table 3). |
| T56 | 4092-4151 | Sentence | denotes | So, the patient was transferred to the intensive care unit. |
| T57 | 4152-4305 | Sentence | denotes | The infectious disease team recommended to manage him as a case of severe COVID-19 pneumonia complicated by ARDS, which might be due to a cytokine storm. |
| T58 | 4306-4533 | Sentence | denotes | Therefore, they added ritonavir plus lopinavir 500 mg orally daily for 14 days, tocilizumab 400 mg i.v. single dose, and methylprednisolone 40 mg i.v. every 12 h for 5 days, and BiPAP has been applied to improve his SpO2 level. |
| T59 | 4534-4689 | Sentence | denotes | After a few hours, he started to improve with this regimen, so he was shifted back to a simple face mask, and gradually the amount of oxygen has decreased. |
| T60 | 4690-4748 | Sentence | denotes | The repeated ABG showed an improvement in pO2 (100 mm Hg). |
| T61 | 4749-4913 | Sentence | denotes | On day 12, the chest X-ray was repeated and showed satisfactory lung field expansion with no significant interval change regarding the bilateral airspace opacities. |
| T62 | 4914-5032 | Sentence | denotes | Right-sided pleural effusion is still noted with progression in the segmental right lower lung zone collapse (Fig. 6). |
| T63 | 5033-5130 | Sentence | denotes | After completion of the treatment, he has gradually improved, and his SpO2 is 98% on ambient air. |
| T64 | 5131-5271 | Sentence | denotes | However, his ANC is fluctuating between 0.4 and 1.8 × 103/μL and he was on daily filgrastim (Fig. 7), so dasatinib has not been started yet. |
| T65 | 5272-5382 | Sentence | denotes | He is still in the hospital but off medications and waiting for his repeated PCR to be negative for discharge. |
| T66 | 5383-5427 | Sentence | denotes | The latest one was done on day 30 (Table 4). |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 92 | 199-206 | Species | denotes | patient | Tax:9606 |
| 93 | 551-559 | Species | denotes | patients | Tax:9606 |
| 94 | 68-88 | Disease | denotes | myelogenous leukemia | MESH:D007951 |
| 95 | 93-96 | Disease | denotes | CML | MESH:D015464 |
| 96 | 224-243 | Disease | denotes | shortness of breath | MESH:D004417 |
| 97 | 297-302 | Disease | denotes | cough | MESH:D003371 |
| 98 | 360-380 | Disease | denotes | pleuritic chest pain | MESH:D002637 |
| 99 | 434-445 | Disease | denotes | sore throat | MESH:D010608 |
| 100 | 496-507 | Disease | denotes | weight loss | MESH:D015431 |
| 101 | 577-585 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 108 | 696-699 | Gene | denotes | ABL | Gene:25 |
| 109 | 727-736 | Chemical | denotes | dasatinib | MESH:D000069439 |
| 110 | 934-943 | Chemical | denotes | dasatinib | MESH:D000069439 |
| 111 | 620-623 | Disease | denotes | CML | MESH:D015464 |
| 112 | 783-795 | Disease | denotes | pancytopenia | MESH:D010198 |
| 113 | 893-909 | Disease | denotes | pleural effusion | MESH:D010996 |
| 116 | 1061-1067 | Chemical | denotes | oxygen | MESH:D010100 |
| 117 | 1151-1157 | Disease | denotes | breath | MESH:D004417 |
| 120 | 1618-1636 | Gene | denotes | C-reactive protein | Gene:1401 |
| 121 | 1519-1531 | Disease | denotes | pancytopenia | MESH:D010198 |
| 125 | 1881-1888 | Species | denotes | patient | Tax:9606 |
| 126 | 1768-1784 | Disease | denotes | pleural effusion | MESH:D010996 |
| 127 | 1969-1977 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 130 | 2053-2070 | Disease | denotes | pleural effusions | MESH:D010996 |
| 131 | 2193-2209 | Disease | denotes | anterior empyema | MESH:D004653 |
| 141 | 2397-2404 | Species | denotes | patient | Tax:9606 |
| 142 | 2483-2501 | Chemical | denotes | hydroxychloroquine | MESH:D006886 |
| 143 | 2523-2535 | Chemical | denotes | azithromycin | MESH:D017963 |
| 144 | 2555-2566 | Chemical | denotes | oseltamivir | MESH:D053139 |
| 145 | 2636-2659 | Chemical | denotes | piperacillin/tazobactam | MESH:D000077725 |
| 146 | 2685-2694 | Chemical | denotes | Dasatinib | MESH:D000069439 |
| 147 | 2423-2440 | Disease | denotes | neutropenic fever | MESH:D005334 |
| 148 | 2445-2453 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 149 | 2602-2610 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 151 | 2910-2938 | Disease | denotes | lymphocytic pleural effusion | MESH:D010996 |
| 153 | 3044-3050 | Chemical | denotes | oxygen | MESH:D010100 |
| 166 | 3682-3689 | Species | denotes | patient | Tax:9606 |
| 167 | 4100-4107 | Species | denotes | patient | Tax:9606 |
| 168 | 3325-3331 | Chemical | denotes | oxygen | MESH:D010100 |
| 169 | 3561-3564 | Chemical | denotes | pO2 | MESH:C093415 |
| 170 | 3598-3602 | Chemical | denotes | HCO3 | MESH:D001639 |
| 171 | 3700-3706 | Chemical | denotes | oxygen | MESH:D010100 |
| 172 | 3711-3721 | Chemical | denotes | salbutamol | MESH:D000420 |
| 173 | 3895-3901 | Chemical | denotes | oxygen | MESH:D010100 |
| 174 | 4047-4059 | Chemical | denotes | triglyceride | MESH:D014280 |
| 175 | 3146-3153 | Disease | denotes | dyspnea | MESH:D004417 |
| 176 | 3202-3212 | Disease | denotes | tachypneic | |
| 177 | 3970-3974 | Disease | denotes | ARDS | MESH:D012128 |
| 187 | 4328-4337 | Chemical | denotes | ritonavir | MESH:D019438 |
| 188 | 4343-4352 | Chemical | denotes | lopinavir | MESH:D061466 |
| 189 | 4386-4397 | Chemical | denotes | tocilizumab | MESH:C502936 |
| 190 | 4427-4445 | Chemical | denotes | methylprednisolone | MESH:D008775 |
| 191 | 4668-4674 | Chemical | denotes | oxygen | MESH:D010100 |
| 192 | 4732-4735 | Chemical | denotes | pO2 | MESH:C093415 |
| 193 | 4156-4174 | Disease | denotes | infectious disease | MESH:D003141 |
| 194 | 4226-4244 | Disease | denotes | COVID-19 pneumonia | MESH:C000657245 |
| 195 | 4260-4264 | Disease | denotes | ARDS | MESH:D012128 |
| 197 | 4926-4942 | Disease | denotes | pleural effusion | MESH:D010996 |
| 201 | 5189-5191 | Gene | denotes | μL | Gene:4591 |
| 202 | 5144-5147 | Gene | denotes | ANC | Gene:8066 |
| 203 | 5236-5245 | Chemical | denotes | dasatinib | MESH:D000069439 |