PMC:7272971 / 2733-3625 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7272971","sourcedb":"PMC","sourceid":"7272971","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7272971","text":"Of the coronaviruses that are known to infect humans, human coronavirus (hCoV) 229E and NL63 are alphacoronaviruses and OC43, HKU1, severe acute respiratory syndrome coronavirus (SARS‐CoV), Middle East respiratory syndrome coronavirus (MERS‐CoV) and SARS‐CoV‐2 are betacoronaviruses. All coronaviruses are termed ‘enveloped’ viruses due to the lipid membrane that surrounds their capsid (protein), which in turn contains RNA (genetic material). Proteins protrude from their lipid envelope (Figure 1) and these can be imaged with electron microscopy as a corona surrounding the virus – hence their name. Coronaviruses contain four major structural proteins, the spike, nucleocapsid, membrane, and envelope proteins. The nucleocapsid, membrane and envelope proteins are mainly involved in forming and structuring the virus, whereas the spike protein is also involved in binding to host cells. 3","tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"96","span":{"begin":834,"end":839},"obj":"Gene"},{"id":"97","span":{"begin":661,"end":666},"obj":"Gene"},{"id":"98","span":{"begin":7,"end":20},"obj":"Species"},{"id":"99","span":{"begin":46,"end":52},"obj":"Species"},{"id":"100","span":{"begin":54,"end":71},"obj":"Species"},{"id":"101","span":{"begin":73,"end":83},"obj":"Species"},{"id":"102","span":{"begin":132,"end":177},"obj":"Species"},{"id":"103","span":{"begin":179,"end":187},"obj":"Species"},{"id":"104","span":{"begin":190,"end":245},"obj":"Species"},{"id":"105","span":{"begin":250,"end":260},"obj":"Species"},{"id":"106","span":{"begin":265,"end":282},"obj":"Species"},{"id":"107","span":{"begin":288,"end":301},"obj":"Species"},{"id":"108","span":{"begin":603,"end":616},"obj":"Species"},{"id":"109","span":{"begin":88,"end":92},"obj":"Species"},{"id":"110","span":{"begin":126,"end":130},"obj":"Species"},{"id":"111","span":{"begin":474,"end":479},"obj":"Chemical"}],"attributes":[{"id":"A96","pred":"tao:has_database_id","subj":"96","obj":"Gene:43740568"},{"id":"A97","pred":"tao:has_database_id","subj":"97","obj":"Gene:43740568"},{"id":"A98","pred":"tao:has_database_id","subj":"98","obj":"Tax:11118"},{"id":"A99","pred":"tao:has_database_id","subj":"99","obj":"Tax:9606"},{"id":"A100","pred":"tao:has_database_id","subj":"100","obj":"Tax:694448"},{"id":"A101","pred":"tao:has_database_id","subj":"101","obj":"Tax:11137"},{"id":"A102","pred":"tao:has_database_id","subj":"102","obj":"Tax:694009"},{"id":"A103","pred":"tao:has_database_id","subj":"103","obj":"Tax:694009"},{"id":"A104","pred":"tao:has_database_id","subj":"104","obj":"Tax:1335626"},{"id":"A105","pred":"tao:has_database_id","subj":"105","obj":"Tax:2697049"},{"id":"A106","pred":"tao:has_database_id","subj":"106","obj":"Tax:694002"},{"id":"A107","pred":"tao:has_database_id","subj":"107","obj":"Tax:11118"},{"id":"A108","pred":"tao:has_database_id","subj":"108","obj":"Tax:11118"},{"id":"A109","pred":"tao:has_database_id","subj":"109","obj":"Tax:277944"},{"id":"A110","pred":"tao:has_database_id","subj":"110","obj":"Tax:290028"},{"id":"A111","pred":"tao:has_database_id","subj":"111","obj":"MESH:D008055"},{"subj":"96","pred":"source","obj":"LitCovid-PubTator"},{"subj":"97","pred":"source","obj":"LitCovid-PubTator"},{"subj":"98","pred":"source","obj":"LitCovid-PubTator"},{"subj":"99","pred":"source","obj":"LitCovid-PubTator"},{"subj":"100","pred":"source","obj":"LitCovid-PubTator"},{"subj":"101","pred":"source","obj":"LitCovid-PubTator"},{"subj":"102","pred":"source","obj":"LitCovid-PubTator"},{"subj":"103","pred":"source","obj":"LitCovid-PubTator"},{"subj":"104","pred":"source","obj":"LitCovid-PubTator"},{"subj":"105","pred":"source","obj":"LitCovid-PubTator"},{"subj":"106","pred":"source","obj":"LitCovid-PubTator"},{"subj":"107","pred":"source","obj":"LitCovid-PubTator"},{"subj":"108","pred":"source","obj":"LitCovid-PubTator"},{"subj":"109","pred":"source","obj":"LitCovid-PubTator"},{"subj":"110","pred":"source","obj":"LitCovid-PubTator"},{"subj":"111","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T12","span":{"begin":344,"end":349},"obj":"Body_part"},{"id":"T13","span":{"begin":388,"end":395},"obj":"Body_part"},{"id":"T14","span":{"begin":421,"end":424},"obj":"Body_part"},{"id":"T15","span":{"begin":445,"end":453},"obj":"Body_part"},{"id":"T16","span":{"begin":474,"end":479},"obj":"Body_part"},{"id":"T17","span":{"begin":647,"end":655},"obj":"Body_part"},{"id":"T18","span":{"begin":705,"end":713},"obj":"Body_part"},{"id":"T19","span":{"begin":755,"end":763},"obj":"Body_part"},{"id":"T20","span":{"begin":840,"end":847},"obj":"Body_part"},{"id":"T21","span":{"begin":884,"end":889},"obj":"Body_part"}],"attributes":[{"id":"A12","pred":"fma_id","subj":"T12","obj":"http://purl.org/sig/ont/fma/fma67264"},{"id":"A13","pred":"fma_id","subj":"T13","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A14","pred":"fma_id","subj":"T14","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A15","pred":"fma_id","subj":"T15","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A16","pred":"fma_id","subj":"T16","obj":"http://purl.org/sig/ont/fma/fma67264"},{"id":"A17","pred":"fma_id","subj":"T17","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A18","pred":"fma_id","subj":"T18","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A19","pred":"fma_id","subj":"T19","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A20","pred":"fma_id","subj":"T20","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A21","pred":"fma_id","subj":"T21","obj":"http://purl.org/sig/ont/fma/fma68646"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T19","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T21","span":{"begin":132,"end":165},"obj":"Disease"},{"id":"T22","span":{"begin":179,"end":183},"obj":"Disease"},{"id":"T23","span":{"begin":250,"end":254},"obj":"Disease"}],"attributes":[{"id":"A21","pred":"mondo_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A22","pred":"mondo_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A23","pred":"mondo_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T21","span":{"begin":46,"end":52},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T22","span":{"begin":54,"end":59},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T23","span":{"begin":325,"end":332},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T24","span":{"begin":350,"end":358},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T25","span":{"begin":552,"end":553},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T26","span":{"begin":577,"end":582},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T27","span":{"begin":682,"end":690},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T28","span":{"begin":733,"end":741},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T29","span":{"begin":815,"end":820},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T30","span":{"begin":884,"end":889},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"attributes":[{"subj":"T21","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T2","span":{"begin":344,"end":349},"obj":"Chemical"},{"id":"T3","span":{"begin":388,"end":395},"obj":"Chemical"},{"id":"T4","span":{"begin":474,"end":479},"obj":"Chemical"},{"id":"T5","span":{"begin":529,"end":537},"obj":"Chemical"},{"id":"T6","span":{"begin":554,"end":560},"obj":"Chemical"},{"id":"T7","span":{"begin":647,"end":655},"obj":"Chemical"},{"id":"T8","span":{"begin":705,"end":713},"obj":"Chemical"},{"id":"T9","span":{"begin":755,"end":763},"obj":"Chemical"},{"id":"T10","span":{"begin":840,"end":847},"obj":"Chemical"}],"attributes":[{"id":"A2","pred":"chebi_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CHEBI_18059"},{"id":"A3","pred":"chebi_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A4","pred":"chebi_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CHEBI_18059"},{"id":"A5","pred":"chebi_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_10545"},{"id":"A6","pred":"chebi_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CHEBI_37409"},{"id":"A7","pred":"chebi_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A8","pred":"chebi_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A9","pred":"chebi_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A10","pred":"chebi_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T24","span":{"begin":0,"end":283},"obj":"Sentence"},{"id":"T25","span":{"begin":284,"end":444},"obj":"Sentence"},{"id":"T26","span":{"begin":445,"end":602},"obj":"Sentence"},{"id":"T27","span":{"begin":603,"end":714},"obj":"Sentence"},{"id":"T28","span":{"begin":715,"end":890},"obj":"Sentence"},{"id":"T29","span":{"begin":891,"end":892},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T24","pred":"source","obj":"LitCovid-sentences"},{"subj":"T25","pred":"source","obj":"LitCovid-sentences"},{"subj":"T26","pred":"source","obj":"LitCovid-sentences"},{"subj":"T27","pred":"source","obj":"LitCovid-sentences"},{"subj":"T28","pred":"source","obj":"LitCovid-sentences"},{"subj":"T29","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#ec93a1","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#93bbec"},{"id":"LitCovid-PD-MONDO","color":"#d5ec93"},{"id":"LitCovid-PD-CLO","color":"#e893ec"},{"id":"LitCovid-PD-CHEBI","color":"#93ecce"},{"id":"LitCovid-sentences","color":"#ecb493"}]}]}}