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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 61-69 Disease denotes COVID-19 MESH:C000657245
3 110-118 Disease denotes COVID-19 MESH:C000657245
5 642-645 Disease denotes MDs MESH:D009436
8 743-751 Disease denotes COVID-19 MESH:C000657245
9 843-850 Disease denotes fitness MESH:D012640
11 1120-1122 Gene denotes EP Gene:2069
14 1825-1827 Gene denotes EP Gene:2069
15 1791-1794 Gene denotes CCL Gene:200575
17 1436-1438 Gene denotes EP Gene:2069
19 2564-2567 Disease denotes MDs MESH:D009436
23 2725-2730 Species denotes child Tax:9606
24 2864-2873 Disease denotes infection MESH:D007239
25 2947-2957 Disease denotes infections MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1295-1298 Body_part denotes MRT http://purl.org/sig/ont/fma/fma272998
T2 1556-1568 Body_part denotes aortic valve http://purl.org/sig/ont/fma/fma7236
T3 1912-1915 Body_part denotes MRT http://purl.org/sig/ont/fma/fma272998
T4 1969-1981 Body_part denotes aortic valve http://purl.org/sig/ont/fma/fma7236

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1556-1568 Body_part denotes aortic valve http://purl.obolibrary.org/obo/UBERON_0002137
T2 1563-1568 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978
T3 1969-1981 Body_part denotes aortic valve http://purl.obolibrary.org/obo/UBERON_0002137
T4 1976-1981 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 61-69 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 110-118 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 743-751 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 1120-1122 Disease denotes EP http://purl.obolibrary.org/obo/MONDO_0002754
T5 1436-1438 Disease denotes EP http://purl.obolibrary.org/obo/MONDO_0002754
T6 1825-1827 Disease denotes EP http://purl.obolibrary.org/obo/MONDO_0002754
T7 2864-2873 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 2947-2957 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 203-216 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizations
T2 538-539 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 720-721 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 953-954 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 1273-1274 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 1354-1355 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 1427-1432 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T8 1556-1562 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T9 1563-1568 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T10 1969-1975 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T11 1976-1981 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T12 2315-2316 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 2338-2339 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 2399-2401 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T15 2888-2899 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T16 2940-2946 http://purl.obolibrary.org/obo/CLO_0001658 denotes active

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1120-1122 Chemical denotes EP http://purl.obolibrary.org/obo/CHEBI_73508
T2 1436-1438 Chemical denotes EP http://purl.obolibrary.org/obo/CHEBI_73508
T3 1791-1794 Chemical denotes CCL http://purl.obolibrary.org/obo/CHEBI_3478
T4 1825-1827 Chemical denotes EP http://purl.obolibrary.org/obo/CHEBI_73508
T5 2399-2401 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2070-2077 http://purl.obolibrary.org/obo/GO_0051235 denotes storage

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-70 Sentence denotes Strategic Cardiac Catheterization Lab Staffing in the Era of COVID-19:
T2 71-89 Sentence denotes The Pod Initiative
T3 91-105 Sentence denotes To the Editor:
T4 106-362 Sentence denotes The COVID-19 pandemic affected cardiovascular programs across Canada, with multiple professional organizations recommending deferral of all elective and semielective procedures to reduce exposures in the hospital setting and to save critical care capacity.
T5 363-429 Sentence denotes Few recommendations directly addressed health care unit integrity.
T6 430-560 Sentence denotes We hypothesized that separate scheduling and physical separation of staff clusters would reduce the risk of a department outbreak.
T7 561-695 Sentence denotes We divided the cardiac catheterization lab into separately functioning “Pods” of MDs, RNs, and medical radiology technologists (MRTs).
T8 696-802 Sentence denotes Should an individual in a Pod be suspected for COVID-19, their entire Pod would be taken off the schedule.
T9 803-917 Sentence denotes Team members would then be assessed for fitness to return to work and subsequent future reactivation of their Pod.
T10 918-993 Sentence denotes To avoid asymptomatic spread, only a fully cleared Pod would be reinstated.
T11 994-1165 Sentence denotes Given the reduction of elective cases it was decided that 2 interventional cardiology labs (ICs) and 1 electrophysiology lab (EP) were sufficient for the planned workload.
T12 1166-1253 Sentence denotes Pod sizes and compositions were considered while assessing the needs of the department.
T13 1254-1383 Sentence denotes We determined that a minimum of 4 RNs, 1 MRT, and 1 IC was needed to perform an isolation case, and a 4-Pod system was developed.
T14 1384-1501 Sentence denotes Two Pods were constructed with the primary focus of EP expertise, with ability to perform IC cases on alternate days.
T15 1502-1631 Sentence denotes Two Pods were constructed with combined transcatheter aortic valve implantation and percutaneous coronary intervention expertise.
T16 1632-1694 Sentence denotes Pods included at least 3 bilingual team members (see Fig. 1 ).
T17 1695-1763 Sentence denotes Figure 1 Catheterization staffing restructuring and sample schedule.
T18 1764-1995 Sentence denotes Cath, catheterization lab; CCL, cardiac catheterization lab; EP, electrophysiology lab; FTE, full-time equivalent; IC, interventional cardiologist; MRT, medical radiology technologist; TAVI, transcatheter aortic valve implantation.
T19 1996-2062 Sentence denotes The Pods were instructed to practice complete physical distancing.
T20 2063-2099 Sentence denotes Shared storage space was eliminated.
T21 2100-2149 Sentence denotes Arrival to work and breaks were staggered by Pod.
T22 2150-2213 Sentence denotes Staff were discouraged from social interaction outside of work.
T23 2214-2309 Sentence denotes All realistic and practical measures were undertaken to maintain social distancing of the pods.
T24 2310-2527 Sentence denotes Were a physician to require a second non-Pod physician for urgent assistance, the second MD would scrub and gown in proper personal protective equipment (PPE) and only then enter the lab being “run” by the first team.
T25 2528-2627 Sentence denotes The physical intermingling of the 2 MDs from different Pods would thus only occur when in full PPE.
T26 2628-2677 Sentence denotes The Pod initiative was implemented April 6, 2020.
T27 2678-2823 Sentence denotes The change of work hours caused struggles with child care, interfered with family time, and caused financial impact, but were tolerated by staff.
T28 2824-2874 Sentence denotes One Pod had 2 individuals suspected for infection:
T29 2875-2936 Sentence denotes 2 days later testing was negative and the Pod was reinstated.
T30 2937-2980 Sentence denotes No active infections occurred in the staff.
T31 2982-2997 Sentence denotes Funding Sources
T32 2998-3045 Sentence denotes The authors have no funding sources to declare.
T33 3047-3058 Sentence denotes Disclosures
T34 3059-3113 Sentence denotes The authors have no conflicts of interest to disclose.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 2178-2196 Phenotype denotes social interaction http://purl.obolibrary.org/obo/HP_0008763