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PMC:7269710 / 9248-21150 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
131 28-36 Disease denotes COVID-19 MESH:C000657245
133 648-656 Disease denotes COVID-19 MESH:C000657245
136 670-673 Gene denotes Age Gene:5973
137 893-917 Disease denotes coronavirus disease 2019 MESH:C000657245
148 1063-1066 Gene denotes Age Gene:5973
149 1344-1359 Disease denotes Chronic illness MESH:D002908
150 1441-1455 Disease denotes Symptoms Fever MESH:D051271
151 1465-1470 Disease denotes Cough MESH:D003371
152 1500-1519 Disease denotes Shortness of breath MESH:D004417
153 1528-1535 Disease denotes Myalgia MESH:D063806
154 1544-1553 Disease denotes Diarrhoea MESH:D003967
155 1568-1572 Disease denotes pain MESH:D010146
156 1599-1605 Disease denotes Nausea MESH:D009325
157 1609-1617 Disease denotes vomiting MESH:D014839
159 1020-1030 Species denotes SARS-CoV-2 Tax:2697049
162 1795-1805 Species denotes SARS-CoV-2 Tax:2697049
163 1806-1853 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
167 1857-1874 Disease denotes Allergic rhinitis MESH:D065631
168 1882-1894 Disease denotes hypertension MESH:D006973
169 1906-1926 Disease denotes cervical spondylosis MESH:D055009
176 95-101 Species denotes people Tax:9606
177 172-178 Species denotes people Tax:9606
178 238-244 Species denotes people Tax:9606
179 312-322 Species denotes SARS-CoV-2 Tax:2697049
180 458-464 Species denotes people Tax:9606
181 75-83 Disease denotes COVID-19 MESH:C000657245
195 2096-2099 Gene denotes AC1 Gene:10141
196 2389-2393 Gene denotes AGX1 Gene:6675
197 2398-2402 Gene denotes AGX2 Gene:6675
198 2644-2648 Gene denotes AGX1 Gene:6675
199 2653-2657 Gene denotes AGX2 Gene:6675
200 3048-3052 Gene denotes AGX1 Gene:6675
201 3057-3061 Gene denotes AGX2 Gene:6675
202 2104-2107 Gene denotes AC2 Gene:108
203 2294-2300 Species denotes people Tax:9606
204 2860-2872 Species denotes participants Tax:9606
205 3006-3016 Species denotes SARS-CoV-2 Tax:2697049
206 2071-2079 Disease denotes COVID-19 MESH:C000657245
207 2184-2192 Disease denotes COVID-19 MESH:C000657245
215 3239-3243 Gene denotes AGX1 Gene:6675
216 3248-3252 Gene denotes AGX2 Gene:6675
217 3305-3315 Species denotes SARS-CoV-2 Tax:2697049
218 3390-3402 Species denotes participants Tax:9606
219 3178-3186 Disease denotes coughing MESH:D003371
220 3278-3286 Disease denotes COVID-19 MESH:C000657245
221 3352-3372 Disease denotes respiratory symptoms MESH:D012818
233 3856-3859 Gene denotes AC2 Gene:108
234 3861-3864 Gene denotes AC3 Gene:109
235 3870-3873 Gene denotes AC4 Gene:196883
236 4041-4044 Gene denotes AC1 Gene:10141
237 4046-4049 Gene denotes AC2 Gene:108
238 4051-4054 Gene denotes AC3 Gene:109
239 4060-4063 Gene denotes AC4 Gene:196883
240 4284-4287 Gene denotes AC1 Gene:10141
241 4294-4297 Gene denotes AH2 Gene:84083
242 3851-3854 Gene denotes AC1 Gene:10141
243 3945-3953 Disease denotes COVID-19 MESH:C000657245
249 4534-4537 Gene denotes AC4 Gene:196883
250 4801-4804 Gene denotes AC1 Gene:10141
251 4526-4529 Gene denotes AC3 Gene:109
252 4598-4608 Species denotes SARS-CoV-2 Tax:2697049
253 4872-4882 Species denotes SARS-CoV-2 Tax:2697049
255 4944-4947 Gene denotes AH2 Gene:84083
261 5358-5370 Species denotes participants Tax:9606
262 5526-5538 Species denotes participants Tax:9606
263 5648-5658 Species denotes SARS-CoV-2 Tax:2697049
264 5768-5780 Species denotes participants Tax:9606
265 5130-5138 Disease denotes COVID-19 MESH:C000657245
267 6463-6475 Species denotes participants Tax:9606
274 6688-6700 Species denotes participants Tax:9606
275 6783-6789 Species denotes people Tax:9606
276 6874-6884 Species denotes SARS-CoV-2 Tax:2697049
277 6817-6822 Disease denotes fever MESH:D005334
278 6824-6844 Disease denotes respiratory symptoms MESH:D012818
279 7286-7294 Disease denotes COVID-19 MESH:C000657245
286 7440-7446 Species denotes people Tax:9606
287 7539-7549 Species denotes SARS-CoV-2 Tax:2697049
288 7736-7742 Species denotes people Tax:9606
289 8025-8031 Species denotes people Tax:9606
290 7564-7573 Disease denotes pneumonia MESH:D011014
291 7748-7756 Disease denotes COVID-19 MESH:C000657245
294 8748-8754 Species denotes people Tax:9606
295 8941-8951 Species denotes SARS-CoV-2 Tax:2697049
300 9884-9890 Species denotes people Tax:9606
301 9721-9730 Disease denotes infection MESH:D007239
302 9827-9836 Disease denotes infection MESH:D007239
303 10069-10077 Disease denotes infected MESH:D007239
305 10621-10629 Disease denotes COVID-19 MESH:C000657245
307 10644-10668 Disease denotes coronavirus disease 2019 MESH:C000657245
315 11109-11115 Species denotes people Tax:9606
316 11170-11176 Species denotes people Tax:9606
317 10720-10725 Disease denotes fever MESH:D005334
318 10730-10735 Disease denotes cough MESH:D003371
319 10913-10918 Disease denotes fever MESH:D005334
320 11117-11128 Disease denotes Lymphopenia MESH:D008231
321 11181-11197 Disease denotes thrombocytopenia MESH:D013921
326 11527-11537 Species denotes SARS-CoV-2 Tax:2697049
327 11638-11644 Chemical denotes oxygen MESH:D010100
328 11808-11817 Chemical denotes lopinavir MESH:D061466
329 11837-11843 Disease denotes deaths MESH:D003643

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T7 1485-1491 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T8 1562-1567 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T9 1587-1591 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T10 1625-1630 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T11 4755-4759 Body_part denotes sole http://purl.org/sig/ont/fma/fma25000
T12 5056-5064 Body_part denotes appendix http://purl.org/sig/ont/fma/fma14542
T13 10988-10993 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T14 11141-11146 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T15 11210-11215 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 1485-1491 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T5 1562-1567 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T6 1587-1591 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T7 1625-1630 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T8 10988-10993 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T54 28-36 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 75-83 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T56 312-320 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T57 648-656 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T58 884-892 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T59 893-917 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T60 1020-1028 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T61 1480-1491 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T62 1544-1553 Disease denotes Diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T63 1581-1591 Disease denotes Runny nose http://purl.obolibrary.org/obo/MONDO_0003014
T64 1795-1803 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T65 1806-1853 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T66 1806-1839 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T67 1857-1874 Disease denotes Allergic rhinitis http://purl.obolibrary.org/obo/MONDO_0011786
T68 1866-1874 Disease denotes rhinitis http://purl.obolibrary.org/obo/MONDO_0003014
T69 1882-1894 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T70 1915-1926 Disease denotes spondylosis http://purl.obolibrary.org/obo/MONDO_0002253
T71 2071-2079 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T72 2184-2192 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T73 2972-2975 Disease denotes AT1 http://purl.obolibrary.org/obo/MONDO_0008840
T74 3006-3014 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T75 3168-3171 Disease denotes AT1 http://purl.obolibrary.org/obo/MONDO_0008840
T76 3278-3286 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T77 3305-3313 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 3945-3953 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T79 4598-4606 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T80 4872-4880 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T81 4958-4961 Disease denotes AT1 http://purl.obolibrary.org/obo/MONDO_0008840
T82 5130-5138 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T83 5648-5656 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T84 6874-6882 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T85 7286-7294 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T86 7539-7547 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T87 7564-7573 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T88 7748-7756 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T89 8941-8949 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T90 9721-9730 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T91 9827-9836 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T92 10621-10629 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T93 10635-10643 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T94 10644-10668 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T95 11117-11128 Disease denotes Lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T96 11181-11197 Disease denotes thrombocytopenia http://purl.obolibrary.org/obo/MONDO_0002049
T97 11527-11535 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T49 37-39 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T50 155-156 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T51 169-171 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T52 181-182 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T53 292-298 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T54 478-479 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T55 500-501 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T56 1000-1006 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T57 1079-1081 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T58 1093-1097 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T59 1093-1097 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T60 1101-1103 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T61 1106-1112 http://purl.obolibrary.org/obo/UBERON_0003100 denotes Female
T62 1148-1150 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T63 1210-1212 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T64 1241-1242 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T65 1294-1295 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T66 1320-1322 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T67 1368-1370 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T68 1523-1525 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T69 1562-1567 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T70 1576-1578 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T71 1587-1591 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T72 1625-1630 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T73 1980-1981 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T74 2096-2099 http://purl.obolibrary.org/obo/CLO_0050355 denotes AC1
T75 2104-2107 http://purl.obolibrary.org/obo/CLO_0001649 denotes AC2
T76 2202-2208 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T77 2405-2406 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 2551-2553 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T79 2606-2608 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T80 2630-2631 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 2759-2761 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T82 2986-2992 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T83 3534-3535 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 3575-3576 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 3851-3854 http://purl.obolibrary.org/obo/CLO_0050355 denotes AC1
T86 3856-3859 http://purl.obolibrary.org/obo/CLO_0001649 denotes AC2
T87 4041-4044 http://purl.obolibrary.org/obo/CLO_0050355 denotes AC1
T88 4046-4049 http://purl.obolibrary.org/obo/CLO_0001649 denotes AC2
T89 4284-4287 http://purl.obolibrary.org/obo/CLO_0050355 denotes AC1
T90 4578-4584 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T91 4665-4671 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T92 4801-4804 http://purl.obolibrary.org/obo/CLO_0050355 denotes AC1
T93 4838-4844 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T94 5083-5084 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T95 5120-5121 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 5228-5229 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T97 5250-5251 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T98 5409-5411 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T99 5604-5606 http://purl.obolibrary.org/obo/CLO_0001812 denotes B3
T100 5612-5614 http://purl.obolibrary.org/obo/CLO_0001818 denotes B5
T101 5624-5626 http://purl.obolibrary.org/obo/PR_000001438 denotes B7
T102 5628-5634 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T103 5961-5962 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 6017-6018 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 6208-6210 http://purl.obolibrary.org/obo/CLO_0001812 denotes B3
T106 6223-6225 http://purl.obolibrary.org/obo/PR_000001438 denotes B7
T107 6262-6265 http://purl.obolibrary.org/obo/CLO_0001577 denotes a 3
T108 6381-6387 http://purl.obolibrary.org/obo/CLO_0001800 denotes B1, B3
T109 6397-6399 http://purl.obolibrary.org/obo/CLO_0001818 denotes B5
T110 6409-6410 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 6454-6456 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T112 6487-6490 http://purl.obolibrary.org/obo/CLO_0050884 denotes ten
T113 6539-6541 http://purl.obolibrary.org/obo/CLO_0001812 denotes B3
T114 6552-6554 http://purl.obolibrary.org/obo/PR_000001438 denotes B7
T115 6863-6869 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T116 6910-6912 http://purl.obolibrary.org/obo/CLO_0001818 denotes B5
T117 6914-6920 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T118 6938-6943 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T119 6990-6998 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T120 7364-7366 http://purl.obolibrary.org/obo/PR_000001438 denotes B7
T121 7470-7472 http://purl.obolibrary.org/obo/CLO_0037284 denotes C4
T122 7519-7525 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T123 7588-7596 http://purl.obolibrary.org/obo/CLO_0001658 denotes Activity
T124 7679-7681 http://purl.obolibrary.org/obo/CLO_0002131 denotes C5
T125 7705-7711 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T126 7799-7801 http://purl.obolibrary.org/obo/CLO_0051741 denotes C1
T127 7806-7808 http://purl.obolibrary.org/obo/CLO_0002105 denotes C2
T128 7806-7808 http://purl.obolibrary.org/obo/CLO_0051742 denotes C2
T129 7950-7952 http://purl.obolibrary.org/obo/CLO_0051741 denotes C1
T130 7957-7959 http://purl.obolibrary.org/obo/CLO_0002105 denotes C2
T131 7957-7959 http://purl.obolibrary.org/obo/CLO_0051742 denotes C2
T132 8162-8163 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T133 8235-8237 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T134 8247-8249 http://purl.obolibrary.org/obo/CLO_0051741 denotes C1
T135 8254-8256 http://purl.obolibrary.org/obo/CLO_0002105 denotes C2
T136 8254-8256 http://purl.obolibrary.org/obo/CLO_0051742 denotes C2
T137 8482-8484 http://purl.obolibrary.org/obo/CLO_0002131 denotes C5
T138 8521-8523 http://purl.obolibrary.org/obo/CLO_0051741 denotes C1
T139 8528-8530 http://purl.obolibrary.org/obo/CLO_0002105 denotes C2
T140 8528-8530 http://purl.obolibrary.org/obo/CLO_0051742 denotes C2
T141 8921-8927 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T142 8950-8955 http://purl.obolibrary.org/obo/CLO_0001230 denotes 2. 93
T143 8950-8955 http://purl.obolibrary.org/obo/CLO_0037237 denotes 2. 93
T144 8950-8955 http://purl.obolibrary.org/obo/CLO_0050903 denotes 2. 93
T145 8950-8955 http://purl.obolibrary.org/obo/CLO_0054249 denotes 2. 93
T146 8950-8955 http://purl.obolibrary.org/obo/CLO_0054250 denotes 2. 93
T147 8950-8955 http://purl.obolibrary.org/obo/CLO_0054251 denotes 2. 93
T148 8950-8955 http://purl.obolibrary.org/obo/CLO_0054252 denotes 2. 93
T149 9237-9238 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T150 9474-9476 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T151 9535-9545 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T152 9654-9655 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T153 9689-9699 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T154 9986-9989 http://purl.obolibrary.org/obo/CLO_0001313 denotes 3–6
T155 10081-10082 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T156 10347-10350 http://purl.obolibrary.org/obo/CLO_0001313 denotes 3–6
T157 10434-10441 http://purl.obolibrary.org/obo/CLO_0001759 denotes that 31
T158 10502-10504 http://purl.obolibrary.org/obo/PR_000001438 denotes B7
T159 10850-10853 http://purl.obolibrary.org/obo/CLO_0001602 denotes a 6
T160 10850-10853 http://purl.obolibrary.org/obo/CLO_0001603 denotes a 6
T161 10850-10853 http://purl.obolibrary.org/obo/CLO_0050248 denotes a 6
T162 10850-10853 http://purl.obolibrary.org/obo/CLO_0052463 denotes a 6
T163 10864-10868 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T164 10864-10868 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T165 10988-10993 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T166 11131-11134 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1·1
T167 11141-11146 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T168 11210-11215 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T169 11567-11574 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T9 1252-1257 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T10 2637-2642 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T11 3119-3124 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T12 3384-3389 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T13 3435-3440 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T14 3510-3515 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T15 4013-4018 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T16 4294-4297 Chemical denotes AH2 http://purl.obolibrary.org/obo/CHEBI_17499
T17 4944-4947 Chemical denotes AH2 http://purl.obolibrary.org/obo/CHEBI_17499
T18 5600-5602 Chemical denotes B2 http://purl.obolibrary.org/obo/CHEBI_51707
T19 7806-7808 Chemical denotes C2 http://purl.obolibrary.org/obo/CHEBI_30083
T20 7931-7933 Chemical denotes Re http://purl.obolibrary.org/obo/CHEBI_49882
T21 7957-7959 Chemical denotes C2 http://purl.obolibrary.org/obo/CHEBI_30083
T22 8254-8256 Chemical denotes C2 http://purl.obolibrary.org/obo/CHEBI_30083
T23 8528-8530 Chemical denotes C2 http://purl.obolibrary.org/obo/CHEBI_30083
T24 9339-9344 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T25 10864-10868 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T26 11638-11644 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T27 11808-11817 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T28 11823-11832 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2734-2740 http://purl.obolibrary.org/obo/GO_0060361 denotes flight
T2 5840-5850 http://purl.obolibrary.org/obo/GO_0065007 denotes Regulation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T78 0-7 Sentence denotes Results
T79 9-36 Sentence denotes Confirmed cases of COVID-19
T80 37-257 Sentence denotes 36 individuals were confirmed to have COVID-19, and these people were related to three local clusters, referred to as A (containing 11 people), B (consisting of 20 individuals), and C (comprising five people; figure 1 ).
T81 258-453 Sentence denotes Of these affected individuals, 17 tested positive for SARS-CoV-2 in Singapore, of whom only two (both from cluster C) had recent travel history to China 14 days before onset of symptoms (table ).
T82 454-590 Sentence denotes Two people from cluster A and 17 from cluster B were reported by the health authorities of countries where they resided or travelled to.
T83 591-669 Sentence denotes Figure 1 Timing of events and cases in three clusters of COVID-19 in Singapore
T84 670-788 Sentence denotes Age and sex are shown for each case (left panels), with other pertinent information (eg, relationship or nationality).
T85 789-883 Sentence denotes Timeline of events (right panels); onset dates of symptomatic cases are shown, when available.
T86 884-918 Sentence denotes COVID-19=coronavirus disease 2019.
T87 919-1043 Sentence denotes Table Demographic, clinical, and radiological characteristics of individuals who tested positive for SARS-CoV-2 in Singapore
T88 1044-1062 Sentence denotes Individuals (n=17)
T89 1063-1085 Sentence denotes Age (years) 40 (36–51)
T90 1086-1092 Sentence denotes Gender
T91 1093-1105 Sentence denotes Male 7 (41%)
T92 1106-1121 Sentence denotes Female 10 (59%)
T93 1122-1135 Sentence denotes Ethnic origin
T94 1136-1152 Sentence denotes Chinese 16 (94%)
T95 1153-1165 Sentence denotes Other 1 (6%)
T96 1166-1177 Sentence denotes Nationality
T97 1178-1198 Sentence denotes Singaporean 13 (76%)
T98 1199-1214 Sentence denotes Chinese 3 (18%)
T99 1215-1232 Sentence denotes Indonesian 1 (6%)
T100 1233-1240 Sentence denotes Cluster
T101 1241-1293 Sentence denotes A (tourist group from China and shopworkers) 9 (53%)
T102 1294-1324 Sentence denotes B (company conference) 3 (18%)
T103 1325-1343 Sentence denotes C (church) 5 (29%)
T104 1344-1359 Sentence denotes Chronic illness
T105 1360-1372 Sentence denotes Yes* 3 (18%)
T106 1373-1384 Sentence denotes No 14 (82%)
T107 1385-1416 Sentence denotes Travel to China in past 14 days
T108 1417-1428 Sentence denotes Yes 2 (12%)
T109 1429-1440 Sentence denotes No 15 (88%)
T110 1441-1449 Sentence denotes Symptoms
T111 1450-1464 Sentence denotes Fever 15 (88%)
T112 1465-1479 Sentence denotes Cough 14 (82%)
T113 1480-1499 Sentence denotes Sore throat 8 (47%)
T114 1500-1527 Sentence denotes Shortness of breath 6 (35%)
T115 1528-1543 Sentence denotes Myalgia 5 (29%)
T116 1544-1561 Sentence denotes Diarrhoea 4 (24%)
T117 1562-1580 Sentence denotes Chest pain 3 (18%)
T118 1581-1598 Sentence denotes Runny nose 1 (6%)
T119 1599-1624 Sentence denotes Nausea or vomiting 1 (6%)
T120 1625-1665 Sentence denotes Chest radiography findings on admission†
T121 1666-1681 Sentence denotes Present 8 (53%)
T122 1682-1696 Sentence denotes Absent 7 (47%)
T123 1697-1762 Sentence denotes Interval between symptom onset and hospitalisation (days) 4 (3–9)
T124 1763-1794 Sentence denotes Data are median (IQR) or n (%).
T125 1795-1854 Sentence denotes SARS-CoV-2=severe acute respiratory syndrome coronavirus 2.
T126 1855-1933 Sentence denotes * Allergic rhinitis (n=1), hypertension (n=1), and cervical spondylosis (n=1).
T127 1934-1970 Sentence denotes † Data available for 15 individuals.
T128 1972-1981 Sentence denotes Cluster A
T129 1982-2132 Sentence denotes The Ministry of Health in Singapore was alerted to two individuals with locally acquired COVID-19 on Feb 3, 2020 (AC1 and AC2; figure 1 upper panels).
T130 2133-2283 Sentence denotes They did not fit the case-definition for suspected COVID-19 but were tested because they reported frequent occupational contact with Chinese tourists.
T131 2284-2643 Sentence denotes These two people were later identified to be linked epidemiologically to two other affected individuals (AGX1 and AGX2), a father and daughter reported by official and media websites in Guangxi, China,8, 9, 10 to be Chinese tourists who travelled to Singapore on Jan 22, 2020, and who visited several tourist sites on Jan 22–23, 2020, as part of a tour group.
T132 2644-2839 Sentence denotes AGX1 and AGX2 subsequently departed for Malaysia before re-entry into Singapore for their flight to Guangxi on Jan 27, 2020, and they developed symptoms on Jan 28, 2020, after arrival in Guangxi.
T133 2840-3091 Sentence denotes Details of the tour participants and the itinerary, obtained through the Singapore-based tour guide for the Singapore tour segment (AT1, who also tested positive for SARS-CoV-2) corroborated with details for AGX1 and AGX2 reported by Guangxi websites.
T134 3092-3203 Sentence denotes Of 20 tourists in the tour group from Guangxi, five or six were reported by AT1 to be coughing during the tour.
T135 3204-3472 Sentence denotes To the best of our knowledge, only AGX1 and AGX2 had laboratory-confirmed COVID-19 (positive PCR for SARS-CoV-2).8 However, in view of the reported respiratory symptoms among tour group participants, it is possible that other tour group members were the primary cases.
T136 3473-3653 Sentence denotes Among the places visited by the tour group in Singapore were a complementary health products shop and a jewellery shop; both shops are patronised frequently by Chinese tour groups.
T137 3654-3791 Sentence denotes The visits to the complementary health products shop lasted approximately 30 min, and the visit to the jewellery shop lasted roughly 1 h.
T138 3792-3954 Sentence denotes Four assistants in the complementary health products shop (AC1, AC2, AC3, and AC4) and one assistant in the jewellery shop (AJ1) were identified to have COVID-19.
T139 3955-4040 Sentence denotes All five shop assistants were at work on the day the tour group from Guangxi visited.
T140 4041-4212 Sentence denotes AC1, AC2, AC3, and AC4 reported that they would assist customers to apply samples of medicinal oil on their bodies, and handwashing was not usually done between customers.
T141 4213-4351 Sentence denotes Three secondary transmission cases were identified in the household of AC1 (AH1, AH2, and AH3), none of whom were contacts of other cases.
T142 4352-4609 Sentence denotes For the cases who were confirmed on or before Feb 5, 2020, 179 close contacts who were in Singapore and contactable were placed under quarantine, of whom two close contacts (AC3 and AC4) subsequently reported to be unwell and tested positive for SARS-CoV-2.
T143 4610-4660 Sentence denotes An additional six close contacts were quarantined.
T144 4661-4883 Sentence denotes For active surveillance, 16 shop assistants at the complementary health products shop and the sole remaining uninfected household member of AC1, who were all asymptomatic, were tested and none were positive for SARS-CoV-2.
T145 4884-5073 Sentence denotes Viral genomic sequences were available for four cases (AH1, AH2, AH3, and AT1) and phylogenetic analysis confirmed their linkage, as suggested by the epidemiological data (appendix pp 2–3).
T146 5075-5084 Sentence denotes Cluster B
T147 5085-5418 Sentence denotes On Feb 4, 2020, Malaysia confirmed a case of COVID-19 in an individual (B1) who had recent travel history to Singapore on Jan 16–23, 2020, for a company conference (a closed business meeting for employees from company branches globally), which was attended by at least 111 participants from 19 different countries on Jan 20–22, 2020.
T148 5419-5507 Sentence denotes 17 attendees at the conference were from mainland China and at least one was from Wuhan.
T149 5508-5684 Sentence denotes Subsequently, six participants at the conference who had no recent travel history to China (B2, B3, B4, B5, B6, and B7) tested positive for SARS-CoV-2 (figure 1 middle panels).
T150 5685-5869 Sentence denotes Two affected individuals from Singapore were identified through contact tracing of participants after notification from the Malaysian International Health Regulation (IHR) focal point.
T151 5870-6043 Sentence denotes The conference programme included business presentations, workshops, breakout discussions, a welcome reception and meals, team-building games, and a Singapore city bus tour.
T152 6044-6188 Sentence denotes Seating arrangements (where available) for the conference, and interviews with affected individuals, indicated close interactions between cases.
T153 6189-6368 Sentence denotes Two groups (B1 and B3, and B4 and B7) were seated at the same tables for a 3-h Chinese banquet-style dinner on Jan 20, 2020, with three and two attendees from China, respectively.
T154 6369-6578 Sentence denotes Four cases (B1, B3, B4, and B5) were in a 4-h breakout session on Jan 21, 2020, with 41 other participants, including ten from China, of whom three had dined with B1 and B3 or B4 and B7 at the Chinese banquet.
T155 6579-6648 Sentence denotes Furthermore, the team-building games entailed close physical contact.
T156 6649-6777 Sentence denotes With initial news of B1, 15 conference participants remaining in Singapore were contacted to find out about their health status.
T157 6778-6944 Sentence denotes Four people reported being unwell with fever, respiratory symptoms, or both and were tested for SARS-CoV-2; two individuals (B4 and B5) tested positive for the virus.
T158 6945-7090 Sentence denotes The third local case (B6) was identified via activity mapping to have attended the conference and had subsequent interactions with company staff.
T159 7091-7139 Sentence denotes 153 close contacts were placed under quarantine.
T160 7140-7263 Sentence denotes Hotel staff were told to monitor their health status, and none reported being unwell during the conference or subsequently.
T161 7264-7377 Sentence denotes 13 secondary cases of COVID-19 were reported among family members of B1 in Malaysia and contacts of B7 in France.
T162 7379-7388 Sentence denotes Cluster C
T163 7389-7587 Sentence denotes The Ministry of Health in Singapore identified two people from Singapore (C3 and C4), with no recent travel history to China, who tested positive for SARS-CoV-2 from enhanced pneumonia surveillance.
T164 7588-7678 Sentence denotes Activity mapping showed that both individuals had visited the same church on Jan 19, 2020.
T165 7679-7725 Sentence denotes C5 was identified through active case-finding.
T166 7726-7836 Sentence denotes Two other people with COVID-19 were subsequently linked to this cluster (C1 and C2, who are husband and wife).
T167 7837-7930 Sentence denotes These individuals were Chinese nationals from Wuhan who arrived in Singapore on Jan 19, 2020.
T168 7931-8015 Sentence denotes Re-interviews with C1 and C2 found they had also visited the church on the same day.
T169 8016-8098 Sentence denotes All five people were asymptomatic during the church visit (figure 1 lower panels).
T170 8099-8353 Sentence denotes The church is an independent church that occasionally receives a few visitors from China at the Mandarin service conducted every Sunday.11 Although C1 and C2 were not church members, they attended the 2-h morning service when they travelled to Singapore.
T171 8354-8440 Sentence denotes They left immediately after the service and did not report having lunch at the church.
T172 8441-8623 Sentence denotes Based on closed-circuit camera findings, C5 occupied the same seat as did cases C1 and C2 at the prayer meeting after the morning service, but they did not recall meeting each other.
T173 8624-8738 Sentence denotes Among the 227 regular church members, 191 members were contacted, of whom 142 attended the church on Jan 19, 2020.
T174 8739-8859 Sentence denotes Of these people, only two had travel history to Guangdong, China, 14 days before Jan 19, 2020; both reported being well.
T175 8860-8952 Sentence denotes Six were unwell and referred for further management and none tested positive for SARS-CoV-2.
T176 8953-9000 Sentence denotes 93 close contacts were placed under quarantine.
T177 9001-9092 Sentence denotes No additional cases linked to any of the three clusters were identified as of Feb 14, 2020.
T178 9094-9131 Sentence denotes Analysis of disease transmission data
T179 9132-9375 Sentence denotes Although we were unable to identify the primary case or cases in each cluster with certainty, in cluster A, the cases in the two shops and the tour guide had inter-related interactions with the Guangxi tour group in which two cases were found.
T180 9376-9500 Sentence denotes Exposures of the shop assistants were assumed to occur on Jan 23, 2020, and the tour guide on Jan 22, 2020, or Jan 23, 2020.
T181 9501-9641 Sentence denotes In cluster C, the only overlap in activities was on Jan 19, 2020, when all five cases visited the church and exposures most likely occurred.
T182 9642-9756 Sentence denotes For cluster B, we used information on reported activities to infer most likely infection times within the meeting.
T183 9757-9891 Sentence denotes Excluding the household cluster, we had information on both estimated infection time and reported date of symptom onset for 19 people.
T184 9892-9940 Sentence denotes The incubation periods are plotted in figure 2 .
T185 9941-9991 Sentence denotes The median incubation period was 4 days (IQR 3–6).
T186 9992-10230 Sentence denotes Without accounting for potential tertiary transmission within the household (infected by a case who was not the primary case), the serial interval for the three transmission pairs in the household cluster ranged between 3 days and 8 days.
T187 10231-10303 Sentence denotes Figure 2 Incubation periods for cases with known probable exposure times
T188 10304-10352 Sentence denotes Median (IQR) time to onset was 4 days (IQR 3–6).
T189 10353-10568 Sentence denotes Assuming one unknown primary case seeded the outbreaks in each cluster, we noted that 31% of transmission pairs were associated with one individual (B7), and 32 observed cases had no onward transmission (figure 3 ).
T190 10569-10634 Sentence denotes Figure 3 Probable secondary cases arising from each COVID-19 case
T191 10635-10669 Sentence denotes COVID-19=coronavirus disease 2019.
T192 10671-10688 Sentence denotes Clinical findings
T193 10689-10839 Sentence denotes Of 17 locally confirmed cases, fever and cough were the two most common symptoms, reported in 15 (88%) and 14 (82%) individuals, respectively (table).
T194 10840-10950 Sentence denotes One case, a 6-month old male infant, was asymptomatic until one spike of fever 2 days into hospital admission.
T195 10951-11116 Sentence denotes Pulmonary opacities were reported on chest radiography at admission in eight (53%) individuals, and developed over the course of admission in four additional people.
T196 11117-11272 Sentence denotes Lymphopenia (<1·1 × 109 cells per L) was seen in six people and thrombocytopenia (<150 × 109 cells per L) in four individuals over the course of admission.
T197 11273-11347 Sentence denotes Median time from symptom onset to hospital admission was 4 days (IQR 3–9).
T198 11348-11460 Sentence denotes The clinical course was uncomplicated for most individuals, with resolution of symptoms over the first few days.
T199 11461-11602 Sentence denotes Hospital admission was prolonged because of persistently positive SARS-CoV-2 PCR from nasopharyngeal swab testing (median 6 days, range 3–9).
T200 11603-11755 Sentence denotes One individual needed supplemental oxygen via nasal prongs and another two developed acute respiratory distress requiring intubation and intensive care.
T201 11756-11833 Sentence denotes Four individuals received experimental treatment of lopinavir with ritonavir.
T202 11834-11902 Sentence denotes No deaths were recorded in these three clusters as of March 7, 2020.

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 2096-2099 GlycoEpitope denotes AC1 http://www.glycoepitope.jp/epitopes/AN0202
T2 3851-3854 GlycoEpitope denotes AC1 http://www.glycoepitope.jp/epitopes/AN0202
T3 4041-4044 GlycoEpitope denotes AC1 http://www.glycoepitope.jp/epitopes/AN0202
T4 4284-4287 GlycoEpitope denotes AC1 http://www.glycoepitope.jp/epitopes/AN0202
T5 4801-4804 GlycoEpitope denotes AC1 http://www.glycoepitope.jp/epitopes/AN0202

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T4 1450-1455 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T5 1465-1470 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T6 1480-1491 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T7 1500-1519 Phenotype denotes Shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T8 1528-1535 Phenotype denotes Myalgia http://purl.obolibrary.org/obo/HP_0003326
T9 1544-1553 Phenotype denotes Diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T10 1562-1572 Phenotype denotes Chest pain http://purl.obolibrary.org/obo/HP_0100749
T11 1581-1591 Phenotype denotes Runny nose http://purl.obolibrary.org/obo/HP_0031417
T12 1599-1617 Phenotype denotes Nausea or vomiting http://purl.obolibrary.org/obo/HP_0002017
T13 1857-1874 Phenotype denotes Allergic rhinitis http://purl.obolibrary.org/obo/HP_0003193
T14 1882-1894 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T15 1906-1926 Phenotype denotes cervical spondylosis http://purl.obolibrary.org/obo/HP_0008480
T16 3178-3186 Phenotype denotes coughing http://purl.obolibrary.org/obo/HP_0012735
T17 6817-6822 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T18 7564-7573 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T19 10720-10725 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T20 10730-10735 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T21 10913-10918 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T22 10951-10970 Phenotype denotes Pulmonary opacities http://purl.obolibrary.org/obo/HP_0031457
T23 11117-11128 Phenotype denotes Lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T24 11181-11197 Phenotype denotes thrombocytopenia http://purl.obolibrary.org/obo/HP_0001873
T25 11694-11714 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098