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PMC:7269710 / 3787-6329 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
63 113-119 Species denotes people Tax:9606
64 346-354 Species denotes patients Tax:9606
65 383-389 Species denotes people Tax:9606
66 421-427 Species denotes people Tax:9606
67 587-595 Species denotes patients Tax:9606
68 762-772 Species denotes SARS-CoV-2 Tax:2697049
69 140-148 Disease denotes COVID-19 MESH:C000657245
70 238-246 Disease denotes COVID-19 MESH:C000657245
71 331-339 Disease denotes COVID-19 MESH:C000657245
72 433-442 Disease denotes pneumonia MESH:D011014
73 686-694 Disease denotes COVID-19 MESH:C000657245
79 1221-1268 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
80 1270-1280 Species denotes SARS-CoV-2 Tax:2697049
81 1087-1095 Disease denotes COVID-19 MESH:C000657245
82 1132-1156 Disease denotes coronavirus disease 2019 MESH:C000657245
83 1158-1166 Disease denotes COVID-19 MESH:C000657245
87 1494-1504 Species denotes SARS-CoV-2 Tax:2697049
88 1617-1627 Species denotes SARS-CoV-2 Tax:2697049
89 1390-1398 Disease denotes COVID-19 MESH:C000657245
93 1956-1962 Species denotes people Tax:9606
94 1851-1859 Disease denotes COVID-19 MESH:C000657245
95 1910-1919 Disease denotes pneumonia MESH:D011014
98 2294-2302 Disease denotes COVID-19 MESH:C000657245
99 2451-2470 Disease denotes Infectious Diseases MESH:D003141

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 150-158 Body_part denotes appendix http://purl.org/sig/ont/fma/fma14542
T2 809-817 Body_part denotes appendix http://purl.org/sig/ont/fma/fma14542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T28 140-148 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T29 331-339 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 433-442 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T31 478-487 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T32 686-694 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 762-770 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T34 1087-1095 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T35 1132-1156 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T36 1158-1166 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 1221-1268 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T38 1221-1254 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T39 1270-1278 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T40 1390-1398 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T41 1494-1502 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T42 1617-1625 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T43 1851-1859 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T44 1910-1919 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T45 1923-1932 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T46 2294-2302 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T47 2451-2461 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T17 68-71 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T18 159-162 http://purl.obolibrary.org/obo/CLO_0008337 denotes p 4
T19 322-326 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T20 582-586 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T21 666-667 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T22 728-729 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 780-781 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 803-807 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T25 818-821 http://purl.obolibrary.org/obo/CLO_0008285 denotes p 1
T26 818-821 http://purl.obolibrary.org/obo/CLO_0008286 denotes p 1
T27 1112-1113 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T28 1282-1285 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T29 1785-1790 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T30 2064-2070 http://purl.obolibrary.org/obo/CLO_0001658 denotes active

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T35 0-12 Sentence denotes Study design
T36 13-164 Sentence denotes Since Jan 2, 2020, the Ministry of Health in Singapore has been refining local case-definitions for people suspected of having COVID-19 (appendix p 4).
T37 165-534 Sentence denotes Doctors are required by law to notify the Ministry of Health of cases of COVID-19.7 Further, Singapore implemented enhanced surveillance on Jan 31, 2020, to test for COVID-19 among patients in intensive care units and people who died of unknown cause, all people with pneumonia in hospitals, and individuals with influenza-like illness in sentinel primary-care clinics.
T38 535-665 Sentence denotes Hospital-based doctors also have permission to test patients who they view with suspicion for clinical or epidemiological reasons.
T39 666-823 Sentence denotes A confirmed case of COVID-19 is defined as an individual with a respiratory sample positive for SARS-CoV-2, using a laboratory-based PCR test (appendix p 1).
T40 824-923 Sentence denotes Phylogenetic analysis is done of available viral genomic sequences to ascertain genetic clustering.
T41 924-943 Sentence denotes Research in context
T42 944-970 Sentence denotes Evidence before this study
T43 971-1111 Sentence denotes We searched PubMed up to Feb 15, 2020 for reports published in English with no date limitations using the keywords “COVID-19” and “cluster”.
T44 1112-1204 Sentence denotes A family cluster of coronavirus disease 2019 (COVID-19) was reported in Shenzhen, Guangdong.
T45 1205-1333 Sentence denotes Transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has also been reported among co-workers in Germany.
T46 1334-1359 Sentence denotes Added value of this study
T47 1360-1470 Sentence denotes We analysed three clusters of COVID-19 in Singapore to assess interactions and possible modes of transmission.
T48 1471-1570 Sentence denotes Our findings show that SARS-CoV-2 is transmissible in community settings beyond household clusters.
T49 1571-1724 Sentence denotes Importation and limited local transmission of SARS-CoV-2 could have occurred before the lockdown of Wuhan and China's institution of travel restrictions.
T50 1725-1767 Sentence denotes Implications of all the available evidence
T51 1768-2022 Sentence denotes Countries should focus on enhancing detection and containment of local clusters of COVID-19, through surveillance of individuals with general pneumonia or influenza-like illnesses, and of people who have been in contact with unwell travellers from China.
T52 2023-2218 Sentence denotes It is also important for countries to do active case-finding among close contacts of affected individuals, including contacts with mild symptoms, to contain clusters and stop them from spreading.
T53 2219-2354 Sentence denotes The Ministry of Health in Singapore identified the first three clusters of COVID-19 cases on Feb 3, 2020, Feb 5, 2020, and Feb 8, 2020.
T54 2355-2542 Sentence denotes All epidemiological investigations and outbreak containment measures were implemented under the Infectious Diseases Act,7 which provides for use of data for analysis to control outbreaks.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 433-442 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 1910-1919 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090