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PMC:7267243 / 2038-7097 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
133 265-268 Gene denotes Lap Gene:7939
134 2454-2462 Gene denotes ORF1 a/b Gene:43740578
135 2523-2531 Gene denotes ORF1 a/b Gene:43740578
136 2592-2600 Gene denotes ORF1 a/b Gene:43740578
137 120-127 Species denotes Patient Tax:9606
138 132-139 Species denotes Patient Tax:9606
139 144-151 Species denotes Patient Tax:9606
140 156-163 Species denotes Patient Tax:9606
141 168-175 Species denotes Patient Tax:9606
142 1341-1362 Species denotes Aspergillus fumigatus Tax:746128
143 1384-1405 Species denotes Aspergillus fumigatus Tax:746128
144 1411-1432 Species denotes Aspergillus fumigatus Tax:746128
145 1699-1720 Species denotes Aspergillus fumigatus Tax:746128
146 1728-1749 Species denotes Aspergillus fumigatus Tax:746128
147 1757-1778 Species denotes Aspergillus fumigatus Tax:746128
148 1784-1805 Species denotes Aspergillus fumigatus Tax:746128
149 2338-2342 Species denotes hMPV Tax:162145
150 2347-2357 Species denotes SARS‐CoV‐2 Tax:2697049
151 2415-2419 Species denotes hMPV Tax:162145
152 2424-2434 Species denotes SARS‐CoV‐2 Tax:2697049
153 2492-2502 Species denotes SARS‐CoV‐2 Tax:2697049
154 2561-2571 Species denotes SARS‐CoV‐2 Tax:2697049
155 2630-2640 Species denotes SARS‐CoV‐2 Tax:2697049
156 1236-1238 Chemical denotes GM MESH:D005839
157 3671-3689 Chemical denotes Hydroxychloroquine MESH:D006886
158 3691-3700 Chemical denotes darunavir MESH:D000069454
159 3705-3715 Chemical denotes cobicistat MESH:D000069547
160 3792-3801 Chemical denotes Ribavirin MESH:D012254
161 3803-3822 Chemical denotes lopinavir/ritonavir MESH:C558899
162 290-333 Disease denotes cholecystitis Arterial hypertension Obesity
163 339-350 Disease denotes sleep apnea MESH:D012891
164 362-392 Disease denotes Hypercholesterolemia Ex‐smoker
165 426-430 Disease denotes COPD MESH:D029424
166 544-591 Disease denotes hypertension Diabetes mellitus Aneurysm coiling
167 601-672 Disease denotes vertebralis Arterial hypertension Bullous Emphysema Smoker Severe COPD MESH:D029424
168 691-702 Disease denotes Hepatitis B MESH:D006509
169 776-780 Disease denotes COPD MESH:D029424
170 879-883 Disease denotes COPD MESH:D029424
171 899-932 Disease denotes MICU MICU SICU SICU MICU ARDS MESH:D012128
172 1134-1153 Disease denotes Acute renal failure MESH:D058186
173 1193-1212 Disease denotes SLEDD SLEDD SLEDD
174 3054-3063 Disease denotes emphysema MESH:D004646
175 3890-3894 Disease denotes Died MESH:D003643
176 3896-3900 Disease denotes Died MESH:D003643
177 3909-3913 Disease denotes Died MESH:D003643
182 9-16 Species denotes Patient Tax:9606
183 36-44 Species denotes patients Tax:9606
184 50-58 Disease denotes COVID‐19 MESH:C000657245
185 70-102 Disease denotes invasive pulmonary aspergillosis MESH:D055744
196 4334-4337 Gene denotes lap Gene:7939
197 4252-4256 Species denotes hMPV Tax:162145
198 4258-4279 Species denotes human metapneumovirus Tax:162145
199 3936-3940 Disease denotes ARDS MESH:D012128
200 3942-3977 Disease denotes acute respiratory distress syndrome MESH:D012128
201 4032-4036 Disease denotes COPD MESH:D029424
202 4038-4075 Disease denotes chronic obstructive pulmonary disease MESH:D029424
203 4162-4168 Disease denotes Cancer MESH:D009369
204 4218-4250 Disease denotes chronic obstructive lung disease MESH:D029424
205 4286-4318 Disease denotes invasive pulmonary aspergillosis MESH:D055744
207 4834-4842 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1230-1235 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T2 2361-2365 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T3 2380-2384 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T4 2437-2441 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T5 2506-2510 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T6 2575-2579 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T7 2938-2946 Body_part denotes cavities http://purl.org/sig/ont/fma/fma76576
T8 4019-4023 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T9 4238-4242 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T10 4358-4379 Body_part denotes lumbar vertebral body http://purl.org/sig/ont/fma/fma16075

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 441-450 Body_part denotes Vertebral http://purl.obolibrary.org/obo/UBERON_3010224
T2 1230-1235 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T3 4238-4242 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T4 4365-4374 Body_part denotes vertebral http://purl.obolibrary.org/obo/UBERON_3010224

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T41 50-58 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T42 89-102 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T43 290-303 Disease denotes cholecystitis http://purl.obolibrary.org/obo/MONDO_0002155
T44 313-325 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T45 326-333 Disease denotes Obesity http://purl.obolibrary.org/obo/MONDO_0011122
T46 339-350 Disease denotes sleep apnea http://purl.obolibrary.org/obo/MONDO_0005296
T47 426-430 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T48 544-556 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T49 557-574 Disease denotes Diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T50 623-635 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T51 644-653 Disease denotes Emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T52 668-672 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T53 691-702 Disease denotes Hepatitis B http://purl.obolibrary.org/obo/MONDO_0005344
T54 691-700 Disease denotes Hepatitis http://purl.obolibrary.org/obo/MONDO_0002251
T55 776-780 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T56 879-883 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T57 928-932 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T58 1134-1153 Disease denotes Acute renal failure http://purl.obolibrary.org/obo/MONDO_0002492
T59 1140-1153 Disease denotes renal failure http://purl.obolibrary.org/obo/MONDO_0001106
T60 1380-1382 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T61 1407-1409 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T62 1434-1436 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T63 1780-1782 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T64 1807-1809 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T65 1820-1822 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T66 2321-2323 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T67 2347-2351 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T68 2398-2400 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T69 2424-2428 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T70 2476-2478 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T71 2492-2496 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T72 2545-2547 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T73 2561-2565 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T74 2614-2616 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T75 2630-2634 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T76 3054-3063 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T77 3936-3940 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T78 3942-3977 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T79 3948-3977 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T80 4032-4075 Disease denotes COPD, chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T81 4058-4075 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T82 4162-4168 Disease denotes Cancer http://purl.obolibrary.org/obo/MONDO_0004992
T83 4169-4176 Disease denotes Mycoses http://purl.obolibrary.org/obo/MONDO_0002041
T84 4218-4250 Disease denotes chronic obstructive lung disease http://purl.obolibrary.org/obo/MONDO_0005002
T85 4226-4250 Disease denotes obstructive lung disease http://purl.obolibrary.org/obo/MONDO_0002267
T86 4238-4250 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T87 4305-4318 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T88 4596-4598 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T89 4834-4842 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T10 187-193 http://purl.obolibrary.org/obo/UBERON_0003100 denotes Female
T11 195-199 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T12 195-199 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T13 201-205 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T14 201-205 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T15 207-211 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T16 207-211 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T17 213-219 http://purl.obolibrary.org/obo/UBERON_0003100 denotes Female
T18 304-312 http://purl.obolibrary.org/obo/UBERON_0001637 denotes Arterial
T19 304-312 http://www.ebi.ac.uk/efo/EFO_0000814 denotes Arterial
T20 441-450 http://purl.obolibrary.org/obo/NCBITaxon_7742 denotes Vertebral
T21 470-474 http://purl.obolibrary.org/obo/CLO_0007190 denotes L4/5
T22 535-543 http://purl.obolibrary.org/obo/UBERON_0001637 denotes Arterial
T23 535-543 http://www.ebi.ac.uk/efo/EFO_0000814 denotes Arterial
T24 598-599 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T25 614-622 http://purl.obolibrary.org/obo/UBERON_0001637 denotes Arterial
T26 614-622 http://www.ebi.ac.uk/efo/EFO_0000814 denotes Arterial
T27 701-702 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T28 1462-1469 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T29 1489-1490 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 2361-2365 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T31 2380-2384 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T32 2437-2441 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T33 2459-2460 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 2461-2462 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T35 2506-2510 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T36 2528-2529 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 2530-2531 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T38 2575-2579 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T39 2597-2598 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 2599-2600 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T41 2793-2795 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T42 2863-2865 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T43 2863-2865 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T44 2938-2946 http://purl.obolibrary.org/obo/UBERON_0002553 denotes cavities
T45 3230-3232 http://purl.obolibrary.org/obo/CLO_0008933 denotes S5
T46 4119-4131 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T47 4238-4242 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T48 4238-4242 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T49 4258-4263 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T50 4365-4374 http://purl.obolibrary.org/obo/NCBITaxon_7742 denotes vertebral
T51 4654-4662 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T52 4676-4677 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 4705-4712 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 397-399 Chemical denotes PY http://purl.obolibrary.org/obo/CHEBI_74799
T4 432-436 Chemical denotes GOLD http://purl.obolibrary.org/obo/CHEBI_59965
T5 674-678 Chemical denotes GOLD http://purl.obolibrary.org/obo/CHEBI_59965
T6 763-771 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T7 800-814 Chemical denotes corticosteroid http://purl.obolibrary.org/obo/CHEBI_50858
T8 866-874 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T9 977-979 Chemical denotes Hg http://purl.obolibrary.org/obo/CHEBI_16170|http://purl.obolibrary.org/obo/CHEBI_25195
T11 996-998 Chemical denotes Hg http://purl.obolibrary.org/obo/CHEBI_16170|http://purl.obolibrary.org/obo/CHEBI_25195
T13 1018-1020 Chemical denotes Hg http://purl.obolibrary.org/obo/CHEBI_16170|http://purl.obolibrary.org/obo/CHEBI_25195
T15 1037-1039 Chemical denotes Hg http://purl.obolibrary.org/obo/CHEBI_16170|http://purl.obolibrary.org/obo/CHEBI_25195
T17 1059-1061 Chemical denotes Hg http://purl.obolibrary.org/obo/CHEBI_16170|http://purl.obolibrary.org/obo/CHEBI_25195
T19 1236-1238 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120
T20 1380-1382 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T21 1407-1409 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T22 1434-1436 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T23 1526-1538 Chemical denotes Itraconazole http://purl.obolibrary.org/obo/CHEBI_6076
T24 1539-1542 Chemical denotes MIC http://purl.obolibrary.org/obo/CHEBI_59059
T25 1569-1572 Chemical denotes MIC http://purl.obolibrary.org/obo/CHEBI_59059
T26 1605-1617 Chemical denotes Itraconazole http://purl.obolibrary.org/obo/CHEBI_6076
T27 1618-1621 Chemical denotes MIC http://purl.obolibrary.org/obo/CHEBI_59059
T28 1648-1651 Chemical denotes MIC http://purl.obolibrary.org/obo/CHEBI_59059
T29 1780-1782 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T30 1807-1809 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T31 1820-1822 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T32 1828-1830 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120
T33 1951-1954 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T35 1961-1964 Chemical denotes MSG http://purl.obolibrary.org/obo/CHEBI_64220|http://purl.obolibrary.org/obo/CHEBI_64243
T37 2234-2236 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120
T38 2292-2294 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120
T39 2321-2323 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T40 2398-2400 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T41 2476-2478 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T42 2545-2547 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T43 2614-2616 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T44 2863-2865 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T45 2976-2978 Chemical denotes S3 http://purl.obolibrary.org/obo/CHEBI_29388
T46 3071-3073 Chemical denotes S4 http://purl.obolibrary.org/obo/CHEBI_29401
T47 3230-3232 Chemical denotes S5 http://purl.obolibrary.org/obo/CHEBI_29386
T48 3395-3406 Chemical denotes Caspofungin http://purl.obolibrary.org/obo/CHEBI_474180
T49 3441-3453 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T50 3529-3540 Chemical denotes Caspofungin http://purl.obolibrary.org/obo/CHEBI_474180
T51 3575-3587 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T52 3691-3700 Chemical denotes darunavir http://purl.obolibrary.org/obo/CHEBI_367163
T53 3705-3715 Chemical denotes cobicistat http://purl.obolibrary.org/obo/CHEBI_72291
T54 3803-3822 Chemical denotes lopinavir/ritonavir http://purl.obolibrary.org/obo/CHEBI_145924
T55 3803-3812 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T56 3813-3822 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T57 4105-4108 Chemical denotes MSG http://purl.obolibrary.org/obo/CHEBI_64220|http://purl.obolibrary.org/obo/CHEBI_64243
T59 4190-4194 Chemical denotes GOLD http://purl.obolibrary.org/obo/CHEBI_59965
T60 4281-4284 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T62 4396-4399 Chemical denotes MIC http://purl.obolibrary.org/obo/CHEBI_59059
T63 4511-4513 Chemical denotes PY http://purl.obolibrary.org/obo/CHEBI_74799
T64 4596-4598 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 339-344 http://purl.obolibrary.org/obo/GO_0030431 denotes sleep

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T22 0-102 Sentence denotes TABLE 1 Patient characteristics of patients with COVID‐19 associated invasive pulmonary aspergillosis
T23 103-178 Sentence denotes Characteristics Patient #1 Patient #2 Patient #3 Patient #4 Patient #5
T24 179-219 Sentence denotes Gender Female Male Male Male Female
T25 220-247 Sentence denotes Age (y) 62 70 54 73 54
T26 248-303 Sentence denotes Medical history Lap. cholecystectomy for cholecystitis
T27 304-325 Sentence denotes Arterial hypertension
T28 326-361 Sentence denotes Obesity with sleep apnea (BMI 31.5)
T29 362-382 Sentence denotes Hypercholesterolemia
T30 383-416 Sentence denotes Ex‐smoker (30 PY; 5 y previously)
T31 417-501 Sentence denotes Moderate COPD (GOLD 2) Vertebral disc prolapse left L4/5, flavectomy and nucleotomy
T32 502-556 Sentence denotes Ex‐smoker (4 months previously) Arterial hypertension
T33 557-574 Sentence denotes Diabetes mellitus
T34 575-635 Sentence denotes Aneurysm coiling right A. vertebralis Arterial hypertension
T35 636-653 Sentence denotes Bullous Emphysema
T36 654-660 Sentence denotes Smoker
T37 661-681 Sentence denotes Severe COPD (GOLD 3)
T38 682-706 Sentence denotes Previous Hepatitis B No
T39 707-888 Sentence denotes Underlying immuno‐compromising condition (inhalational steroids for COPD) No (intravenous corticosteroid therapy 0.4 mg/kg/d, total of 13 d) (inhalational steroids for COPD) No
T40 889-927 Sentence denotes ICU Ward MICU MICU SICU SICU MICU
T41 928-932 Sentence denotes ARDS
T42 933-1062 Sentence denotes Horowitz‐Index, admission 12 Severe (53 mm Hg) Severe (93 mm Hg) Moderate (128 mm Hg) Severe (83 mm Hg) Moderate (167 mm Hg)
T43 1063-1105 Sentence denotes Prone positioning Yes Yes Yes Yes Yes
T44 1106-1133 Sentence denotes vvECMO Yes No No No No
T45 1134-1178 Sentence denotes Acute renal failure Yes Yes Yes Yes Yes
T46 1179-1216 Sentence denotes Dialysis No SLEDD SLEDD SLEDD No
T47 1217-1229 Sentence denotes Microbiology
T48 1230-1318 Sentence denotes Serum GM (>0.5) Negative Positive (0.7) Negative Negative 2× positive (2.7 and 1.3)
T49 1319-1340 Sentence denotes Fungal culture BALF:
T50 1341-1383 Sentence denotes Aspergillus fumigatus BALF: negative TA:
T51 1384-1410 Sentence denotes Aspergillus fumigatus TA:
T52 1411-1446 Sentence denotes Aspergillus fumigatus TA: negative
T53 1447-1525 Sentence denotes Susceptibility testing Azole susceptible a Not applicable Azole susceptible
T54 1526-1555 Sentence denotes Itraconazole MIC 0.380 (mg/L)
T55 1556-1604 Sentence denotes Voriconazole MIC 0.094 (mg/L) Azole susceptible
T56 1605-1634 Sentence denotes Itraconazole MIC 0.380 (mg/L)
T57 1635-1680 Sentence denotes Voriconazole MIC 0.094 (mg/L) Not applicable
T58 1681-1698 Sentence denotes Fungal PCR BALF:
T59 1699-1727 Sentence denotes Aspergillus fumigatus BALF:
T60 1728-1756 Sentence denotes Aspergillus fumigatus BALF:
T61 1757-1783 Sentence denotes Aspergillus fumigatus TA:
T62 1784-1819 Sentence denotes Aspergillus fumigatus TA: negative
T63 1820-1844 Sentence denotes TA/BALF GM (>0.5) BALF:
T64 1845-1867 Sentence denotes Positive (>2.5) BALF:
T65 1868-1890 Sentence denotes Positive (>2.5) BALF:
T66 1891-1936 Sentence denotes Positive (>2.5) Not available Not available
T67 1937-1954 Sentence denotes Definition of IPA
T68 1955-2165 Sentence denotes EORTC/MSG Criteria 8 Not classifiable (no host criterion) Not classifiable (no host criterion) Not classifiable (no host criterion) Not classifiable (no host criterion) Not classifiable (no host criterion)
T69 2166-2306 Sentence denotes (modified) AspICU algorithm 3 , 7 Putative Modified putative 3 (GM positivity) Putative Putative Modified putative 3 (GM positivity)
T70 2307-2315 Sentence denotes Virology
T71 2316-2366 Sentence denotes PCR TA: positive for hMPV and SARS‐CoV‐2 (E‐gene:
T72 2367-2385 Sentence denotes C t 13.29; S‐gene:
T73 2386-2442 Sentence denotes C t 12.61) TA: positive for hMPV and SARS‐CoV‐2(E‐gene:
T74 2443-2463 Sentence denotes C t 34.29; ORF1 a/b:
T75 2464-2511 Sentence denotes C t 31.47) TA positive for SARS‐CoV‐2 (E‐gene:
T76 2512-2532 Sentence denotes C t 29.74; ORF1 a/b:
T77 2533-2580 Sentence denotes C t 27.86) TA positive for SARS‐CoV‐2 (E‐gene:
T78 2581-2601 Sentence denotes C t 21.47; ORF1 a/b:
T79 2602-2667 Sentence denotes C t 20.12) TA positive for SARS‐CoV‐2 (C t values not available)
T80 2668-3244 Sentence denotes CT imaging studies Combined bilateral ground‐glass opacities with crazy paving and peripheral nodular consolidations (Video S1, Figure 1A) Ground‐glass opacities with occasional nodules (Video S2, Figure 1B) Bilateral ground‐glass opacities, nodular infiltrates with cavities and air crescent sign (Video S3, Figure 1C) Ground‐glass opacities with occasional nodules, known bullous emphysema (Video S4, Figure 1D) Ground‐glass opacities, smaller areas with crazy paving pattern, central and peripheral consolidations, and smaller nodular infiltrates (Video S5, Figure 1E)
T81 3245-3252 Sentence denotes Therapy
T82 3253-3617 Sentence denotes Antifungal treatment Voriconazole iv (6/4 mg/kg BW twice daily) Isavuconazole iv (200 mg thrice daily for 2 d; 200 mg once daily from 3 d) Caspofungin (70/50 mg once daily) followed by voriconazole iv (6/4 mg/kg BW twice daily) Voriconazole iv (6/4 mg/kg BW twice daily) Caspofungin (70/50 mg once daily) followed by voriconazole iv (6/4 mg/kg BW twice daily)
T83 3618-3880 Sentence denotes Antiviral therapy Supportive only Supportive only Hydroxychloroquine, darunavir and cobicistat at external hospital, in house changed to supportive only Supportive only Ribavirin, lopinavir/ritonavir at external hospital, in house changed to supportive only
T84 3881-3920 Sentence denotes Outcome Died Died Alive Died Alive
T85 3921-4675 Sentence denotes Abbreviations: ARDS, acute respiratory distress syndrome; BALF, bronchoalveolar lavage fluid; BW, body weight; COPD, chronic obstructive pulmonary disease; C t, threshold cycle; EORTC/MSG, European Organization for Research and Treatment of Cancer/Mycoses Study Group; GOLD, global initiative for chronic obstructive lung disease; hMPV, human metapneumovirus; IPA, invasive pulmonary aspergillosis; kg, kilogram; lap, laparoscopic; LVB, lumbar vertebral body; mg, milligram; MIC, minimal inhibitory concentration; MICU, medical ICU; ORF, open reading frame; PCR, polymerase chain reaction; PY, pack‐year history; SICU, surgical ICU; SLEDD, slow low‐efficient daily dialysis; TA, tracheal aspirate; vvECMO, veno‐venous extracorporeal membrane oxygenation.
T86 4676-4726 Sentence denotes a Antifungal susceptibility testing by VIPcheck™.
T87 4727-4728 Sentence denotes 6
T88 4729-4876 Sentence denotes John Wiley & Sons, Ltd This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response.
T89 4877-5059 Sentence denotes It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T9 70-102 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T10 290-303 Phenotype denotes cholecystitis http://purl.obolibrary.org/obo/HP_0001082
T11 313-325 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T12 326-333 Phenotype denotes Obesity http://purl.obolibrary.org/obo/HP_0001513
T13 339-350 Phenotype denotes sleep apnea http://purl.obolibrary.org/obo/HP_0010535
T14 362-382 Phenotype denotes Hypercholesterolemia http://purl.obolibrary.org/obo/HP_0003124
T15 426-430 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T16 544-556 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T17 557-574 Phenotype denotes Diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T18 575-583 Phenotype denotes Aneurysm http://purl.obolibrary.org/obo/HP_0002617
T19 623-635 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T20 644-653 Phenotype denotes Emphysema http://purl.obolibrary.org/obo/HP_0002097
T21 668-672 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T22 691-700 Phenotype denotes Hepatitis http://purl.obolibrary.org/obo/HP_0012115
T23 776-780 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T24 879-883 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T25 1134-1153 Phenotype denotes Acute renal failure http://purl.obolibrary.org/obo/HP_0001919
T26 1951-1954 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T27 2951-2968 Phenotype denotes air crescent sign http://purl.obolibrary.org/obo/HP_0032172
T28 3054-3063 Phenotype denotes emphysema http://purl.obolibrary.org/obo/HP_0002097
T29 3948-3968 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T30 4032-4036 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T31 4038-4075 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T32 4162-4168 Phenotype denotes Cancer http://purl.obolibrary.org/obo/HP_0002664
T33 4226-4250 Phenotype denotes obstructive lung disease http://purl.obolibrary.org/obo/HP_0006536
T34 4281-4284 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T35 4286-4318 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103