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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 828-839 Body_part denotes bone marrow http://purl.org/sig/ont/fma/fma9608
T3 948-959 Body_part denotes bone marrow http://purl.org/sig/ont/fma/fma9608
T4 1086-1100 Body_part denotes immune systems http://purl.org/sig/ont/fma/fma9825
T5 1125-1134 Body_part denotes stem cell http://purl.org/sig/ont/fma/fma63368
T6 1130-1134 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T7 1197-1208 Body_part denotes bone marrow http://purl.org/sig/ont/fma/fma9608
T8 1498-1503 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T9 1508-1514 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T10 1676-1681 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T11 1742-1747 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T12 1886-1895 Body_part denotes stem cell http://purl.org/sig/ont/fma/fma63368
T13 1891-1895 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T14 2464-2469 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670
T15 2474-2485 Body_part denotes Bone Marrow http://purl.org/sig/ont/fma/fma9608
T16 2881-2890 Body_part denotes stem cell http://purl.org/sig/ont/fma/fma63368
T17 2886-2890 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T18 2908-2914 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T19 3044-3049 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T20 3303-3307 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T21 3360-3364 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T22 3989-4000 Body_part denotes bone marrow http://purl.org/sig/ont/fma/fma9608
T23 4056-4067 Body_part denotes bone marrow http://purl.org/sig/ont/fma/fma9608

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 828-839 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371
T3 948-959 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371
T4 1086-1100 Body_part denotes immune systems http://purl.obolibrary.org/obo/UBERON_0002405
T5 1197-1208 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371
T6 1498-1503 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T7 1508-1514 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T8 1676-1681 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T9 1742-1747 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T10 2464-2469 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178
T11 2474-2485 Body_part denotes Bone Marrow http://purl.obolibrary.org/obo/UBERON_0002371
T12 2908-2914 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T13 3044-3049 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T14 3303-3307 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T15 3360-3364 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T16 3989-4000 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371
T17 4056-4067 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 69-77 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 219-239 Disease denotes virus, the infection http://purl.obolibrary.org/obo/MONDO_0005108
T4 230-239 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T5 679-685 Disease denotes Cancer http://purl.obolibrary.org/obo/MONDO_0004992
T6 718-726 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 727-736 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 909-933 Disease denotes hematologic malignancies http://purl.obolibrary.org/obo/MONDO_0002334|http://purl.obolibrary.org/obo/MONDO_0044881
T10 1173-1182 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T11 1287-1295 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 1296-1305 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 1508-1523 Disease denotes kidney diseases http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T15 1565-1574 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T16 3130-3139 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T17 4086-4094 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 18-21 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes Pan
T3 169-174 http://purl.obolibrary.org/obo/UBERON_0001456 denotes faced
T4 199-200 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 219-224 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T6 418-431 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organizations
T7 490-493 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T8 700-701 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 828-832 http://purl.obolibrary.org/obo/UBERON_0002481 denotes bone
T10 857-862 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T11 874-875 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 948-952 http://purl.obolibrary.org/obo/UBERON_0002481 denotes bone
T13 1086-1100 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune systems
T14 1125-1134 http://purl.obolibrary.org/obo/CL_0000034 denotes stem cell
T15 1195-1196 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 1197-1201 http://purl.obolibrary.org/obo/UBERON_0002481 denotes bone
T17 1498-1503 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T18 1498-1503 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T19 1508-1514 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T20 1508-1514 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T21 1508-1514 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T22 1676-1681 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T23 1676-1681 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T24 1742-1747 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T25 1742-1747 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T26 1886-1895 http://purl.obolibrary.org/obo/CL_0000034 denotes stem cell
T27 2293-2294 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 2464-2469 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T29 2464-2469 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T30 2474-2478 http://purl.obolibrary.org/obo/UBERON_0002481 denotes Bone
T31 2764-2769 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T32 2780-2783 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T33 2881-2890 http://purl.obolibrary.org/obo/CL_0000034 denotes stem cell
T34 2938-2942 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T35 3044-3049 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T36 3102-3103 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 3570-3571 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 3582-3586 http://purl.obolibrary.org/obo/CLO_0001048 denotes 1184
T39 3639-3642 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T40 3989-3993 http://purl.obolibrary.org/obo/UBERON_0002481 denotes bone
T41 4056-4060 http://purl.obolibrary.org/obo/UBERON_0002481 denotes bone

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1809-1813 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T2 3341-3348 Chemical denotes alcohol http://purl.obolibrary.org/obo/CHEBI_16236|http://purl.obolibrary.org/obo/CHEBI_30879

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1548-1557 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence
T2 1548-1557 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 679-685 Phenotype denotes Cancer http://purl.obolibrary.org/obo/HP_0002664
T2 790-798 Phenotype denotes Oncology http://purl.obolibrary.org/obo/HP_0002664
T3 1359-1379 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T4 1508-1523 Phenotype denotes kidney diseases http://purl.obolibrary.org/obo/HP_0000112
T5 3028-3033 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T6 3035-3040 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T2 0-45 Sentence denotes To the editors of Pan African Medical Journal
T3 46-195 Sentence denotes The novel coronavirus (COVID-19) pandemic is the defining global health crisis of our time and the greatest threat we have faced during this century.
T4 196-387 Sentence denotes As a highly contagious virus, the infection emerged in China in January 2020 [1] and rapidly spread globally; with the most affected regions being the USA, Europe, Republic of Korea and Iran.
T5 388-541 Sentence denotes According to the World Health Organizations´ (WHO) data, in April 2020, one million of the population has been infected with more than 50 000 deaths [2].
T6 542-678 Sentence denotes To date, in the absence of any specific treatment, our knowledge about this disease remains very limited and is subject to rapid change.
T7 679-851 Sentence denotes Cancer is considered a risk factor for COVID-19 infection (1%) [3], with very few cases reported in hematology-Oncology, but with no data related to bone marrow transplant.
T8 852-1038 Sentence denotes This virus represents a serious danger for patients with hematologic malignancies scheduled for bone marrow transplant due to myeloablative conditioning and immunosuppressive treatments.
T9 1039-1187 Sentence denotes People receiving chemotherapy with compromised immune systems and complications after stem cell transplant have an increased risk for infection [4].
T10 1188-1286 Sentence denotes During a bone marrow transplant, pulmonary complications are frequent and associated to death [5].
T11 1287-1528 Sentence denotes COVID-19 infection may complicate clinical symptoms with higher risk of respiratory distress [6], and this situation could be even more critical depending on factors of co-morbidity such as age, cardiovascular, liver and kidney diseases [7].
T12 1529-1672 Sentence denotes In addition to the virulence of the infection, restrictive government measures cause many obstacles and difficulties for the transplant course:
T13 1673-2234 Sentence denotes 1) blood transfusion is vital for transplant patients; the number of blood donors decreases drastically with population confinement, 2) drug manufacturing and available medicines are compromised, 3) the allogenic stem cell transplant with donors on international files becomes very difficult to access because of the international borders shut down, 4) Management of unstable patients requires an intensive care unit with mechanical ventilation, however, depending on the pandemic level and the healthcare system in each country, hospital beds might be lacking.
T14 2235-2320 Sentence denotes Therefore, the management of patients transplanted during a pandemic is very complex.
T15 2321-2508 Sentence denotes To overcome this crisis, some recommendations and emergency measures have been developed by scientific societies like the European Society for Blood and Bone Marrow Transplantation [8,9].
T16 2509-2601 Sentence denotes Their guidelines are established according to the coronavirus high contagion rate in Europe.
T17 2602-2752 Sentence denotes The most important messages are the postponement of any low-risk non-urgent transplant, and freezing rich grafts if mobilization is already scheduled.
T18 2753-2943 Sentence denotes Currently, virus detection has become mandatory before any transplant process, among donors as well as recipients for allogenic stem cell transplant using throat-swab specimens for PCR test.
T19 2944-3072 Sentence denotes During the transplant period, detection must be carried out before any symptom like fever, cough or chest imaging abnormalities.
T20 3073-3238 Sentence denotes Prevention procedures remain a very useful mean to avoid infection, and the WHO recommendations must be diligently followed by healthcare staff, patients and donors.
T21 3239-3396 Sentence denotes It is vital to be very careful with hygiene routines, including hand washing, use of protective mask, alcohol-containing hand sanitizers, and limited visits.
T22 3397-3505 Sentence denotes In post-transplant follow-up period, it is recommended to prioritize telemedicine consultations if possible.
T23 3506-3623 Sentence denotes In Morocco, the situation is less critical than in Europe, with a record of 1184 confirmed cases with 90 deaths [10].
T24 3624-3863 Sentence denotes The government has adopted containment measures very early but the contagion is still gaining ground, and to ensure the safety of our transplanted patients, our hematology centers have adopted actions based on the European recommendations.
T25 3864-4016 Sentence denotes In the Table 1, we summarize the main practical steps that can be taken to reduce the risk to our vulnerable patients during bone marrow transplant [8].
T26 4017-4103 Sentence denotes Table 1 practical recommendations for bone marrow transplant during COVID-19 pandemic

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
22 50-67 Species denotes novel coronavirus Tax:2697049
23 895-903 Species denotes patients Tax:9606
24 1039-1045 Species denotes People Tax:9606
25 1718-1726 Species denotes patients Tax:9606
26 2049-2057 Species denotes patients Tax:9606
27 69-77 Disease denotes COVID-19 MESH:C000657245
28 230-239 Disease denotes infection MESH:D007239
29 499-507 Disease denotes infected MESH:D007239
30 530-536 Disease denotes deaths MESH:D003643
31 679-685 Disease denotes Cancer MESH:D009369
32 718-726 Disease denotes COVID-19 MESH:C000657245
33 727-736 Disease denotes infection MESH:D007239
34 909-933 Disease denotes hematologic malignancies MESH:D019337
35 1173-1182 Disease denotes infection MESH:D007239
36 1276-1281 Disease denotes death MESH:D003643
37 1287-1295 Disease denotes COVID-19 MESH:C000657245
38 1296-1305 Disease denotes infection MESH:D007239
39 1359-1379 Disease denotes respiratory distress MESH:D012128
40 1508-1523 Disease denotes kidney diseases MESH:D007674
41 1565-1574 Disease denotes infection MESH:D007239
52 2264-2272 Species denotes patients Tax:9606
53 2559-2570 Species denotes coronavirus Tax:11118
54 3218-3226 Species denotes patients Tax:9606
55 3771-3779 Species denotes patients Tax:9606
56 3973-3981 Species denotes patients Tax:9606
57 3341-3348 Chemical denotes alcohol MESH:D000438
58 3028-3033 Disease denotes fever MESH:D005334
59 3035-3040 Disease denotes cough MESH:D003371
60 3130-3139 Disease denotes infection MESH:D007239
61 3611-3617 Disease denotes deaths MESH:D003643
99 4086-4094 Disease denotes COVID-19 MESH:C000657245