PMC:7258756 / 8767-9640
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 155 | 867-871 | Gene | denotes | hu-1 | Gene:6195 |
| 156 | 32-42 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 157 | 748-758 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 158 | 835-845 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 159 | 515-517 | Chemical | denotes | nt | MESH:D009711 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T38 | 12-18 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T39 | 503-513 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T40 | 515-517 | Body_part | denotes | nt | http://purl.org/sig/ont/fma/fma82740 |
| T41 | 615-625 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T42 | 641-651 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T43 | 653-655 | Body_part | denotes | aa | http://purl.org/sig/ont/fma/fma82739 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T83 | 32-40 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T84 | 32-36 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T85 | 748-756 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T86 | 748-752 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T87 | 835-843 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T88 | 835-839 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T71 | 400-401 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T72 | 606-609 | http://purl.obolibrary.org/obo/CLO_0008190 | denotes | Per |
| T73 | 653-655 | http://purl.obolibrary.org/obo/CLO_0001627 | denotes | aa |
| T74 | 759-766 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T18 | 274-278 | Chemical | denotes | MEGA | http://purl.obolibrary.org/obo/CHEBI_6617 |
| T19 | 503-513 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T20 | 515-517 | Chemical | denotes | nt | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T21 | 589-593 | Chemical | denotes | MEGA | http://purl.obolibrary.org/obo/CHEBI_6617 |
| T22 | 615-625 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T23 | 641-651 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T24 | 641-646 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T25 | 647-651 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T26 | 653-655 | Chemical | denotes | aa | http://purl.obolibrary.org/obo/CHEBI_33709 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T70 | 0-221 | Sentence | denotes | Full-length genome sequences of SARS-CoV-2 were downloaded from the GISAID database17 (Supplementary Table I (available from http://www.ijmr.org.in/articles/2020/151/2/images/IndianJMedRes_2020_151_2_200_281471_sm5.pdf)). |
| T71 | 222-399 | Sentence | denotes | Multiple sequence alignment was performed using the MEGA software version 7.018 with retrieved sequences from two of the three positive cases and the available GISAID sequences. |
| T72 | 400-605 | Sentence | denotes | A phylogenetic tree was generated using the neighbour joining method and the Kimura-2-parameter as the nucleotide (nt) substitution model with 1000 bootstrap replications as implemented in MEGA software18. |
| T73 | 606-714 | Sentence | denotes | Per cent nucleotide divergence and amino acid (aa) divergence were calculated using the p-distance method18. |
| T74 | 715-873 | Sentence | denotes | Mutations specific to the Indian SARS-CoV-2 viruses were identified by comparing the coding regions with respect to the SARS-CoV-2, Wuhan, China (Wuhan hu-1). |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32242873-31565258-47036565 | 83-85 | 31565258 | denotes | 17 |
| 32242873-27004904-47036566 | 298-301 | 27004904 | denotes | 018 |
| 32242873-27004904-47036567 | 602-604 | 27004904 | denotes | 18 |
| 32242873-27004904-47036568 | 711-713 | 27004904 | denotes | 18 |
| T62421 | 83-85 | 31565258 | denotes | 17 |
| T79581 | 298-301 | 27004904 | denotes | 018 |
| T13164 | 602-604 | 27004904 | denotes | 18 |
| T93390 | 711-713 | 27004904 | denotes | 18 |