PMC:7258756 / 8665-9273 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7258756","sourcedb":"PMC","sourceid":"7258756","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7258756","text":", QIAGEN, Germany). Reference-based mapping was performed to retrieve the sequence of the SARS-CoV-2.\nFull-length genome sequences of SARS-CoV-2 were downloaded from the GISAID database17 (Supplementary Table I (available from http://www.ijmr.org.in/articles/2020/151/2/images/IndianJMedRes_2020_151_2_200_281471_sm5.pdf)). Multiple sequence alignment was performed using the MEGA software version 7.018 with retrieved sequences from two of the three positive cases and the available GISAID sequences. A phylogenetic tree was generated using the neighbour joining method and the Kimura-2-parameter as the nuc","tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"149","span":{"begin":90,"end":100},"obj":"Species"},{"id":"156","span":{"begin":134,"end":144},"obj":"Species"}],"attributes":[{"id":"A149","pred":"tao:has_database_id","subj":"149","obj":"Tax:2697049"},{"id":"A156","pred":"tao:has_database_id","subj":"156","obj":"Tax:2697049"},{"subj":"149","pred":"source","obj":"LitCovid-PubTator"},{"subj":"156","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T38","span":{"begin":114,"end":120},"obj":"Body_part"}],"attributes":[{"id":"A38","pred":"fma_id","subj":"T38","obj":"http://purl.org/sig/ont/fma/fma84116"},{"subj":"T38","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T81","span":{"begin":90,"end":98},"obj":"Disease"},{"id":"T82","span":{"begin":90,"end":94},"obj":"Disease"},{"id":"T83","span":{"begin":134,"end":142},"obj":"Disease"},{"id":"T84","span":{"begin":134,"end":138},"obj":"Disease"}],"attributes":[{"id":"A81","pred":"mondo_id","subj":"T81","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A82","pred":"mondo_id","subj":"T82","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A83","pred":"mondo_id","subj":"T83","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A84","pred":"mondo_id","subj":"T84","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T81","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T82","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T83","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T84","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T71","span":{"begin":502,"end":503},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T71","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T18","span":{"begin":376,"end":380},"obj":"Chemical"}],"attributes":[{"id":"A18","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_6617"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T69","span":{"begin":20,"end":101},"obj":"Sentence"},{"id":"T70","span":{"begin":102,"end":323},"obj":"Sentence"},{"id":"T71","span":{"begin":324,"end":501},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T69","pred":"source","obj":"LitCovid-sentences"},{"subj":"T70","pred":"source","obj":"LitCovid-sentences"},{"subj":"T71","pred":"source","obj":"LitCovid-sentences"}]},{"project":"2_test","denotations":[{"id":"32242873-31565258-47036565","span":{"begin":185,"end":187},"obj":"31565258"},{"id":"32242873-27004904-47036566","span":{"begin":400,"end":403},"obj":"27004904"},{"id":"T62421","span":{"begin":185,"end":187},"obj":"31565258"},{"id":"T79581","span":{"begin":400,"end":403},"obj":"27004904"}],"attributes":[{"subj":"32242873-31565258-47036565","pred":"source","obj":"2_test"},{"subj":"32242873-27004904-47036566","pred":"source","obj":"2_test"},{"subj":"T62421","pred":"source","obj":"2_test"},{"subj":"T79581","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#93ecdb","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#ecc193"},{"id":"LitCovid-PD-MONDO","color":"#a793ec"},{"id":"LitCovid-PD-CLO","color":"#98ec93"},{"id":"LitCovid-PD-CHEBI","color":"#ec93b2"},{"id":"LitCovid-sentences","color":"#93ccec"},{"id":"2_test","color":"#e7ec93"}]}]}}