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PMC:7258756 / 865-1634 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
25 536-541 Gene denotes spike Gene:43740568
26 81-91 Species denotes SARS-CoV-2 Tax:2697049
27 230-240 Species denotes SARS-CoV-2 Tax:2697049
28 298-334 Species denotes Wuhan seafood market pneumonia virus Tax:2697049
29 670-675 Species denotes human Tax:9606

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T6 117-128 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T7 130-137 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T8 173-179 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T9 472-476 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T10 542-549 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T11 643-647 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T12 676-685 Body_part denotes leucocyte http://purl.org/sig/ont/fma/fma62852

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T13 81-89 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 81-85 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T15 230-238 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 230-234 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 319-328 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T10 17-18 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 160-161 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 329-334 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T13 470-476 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T14 523-525 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T15 555-556 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 641-647 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T17 670-675 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T18 676-685 http://purl.obolibrary.org/obo/CL_0000738 denotes leucocyte
T19 713-714 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T20 719-720 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 117-128 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T2 542-549 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T3 572-579 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T4 686-693 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T11 0-92 Sentence denotes Three cases with a travel history from Wuhan, China, were confirmed positive for SARS-CoV-2.
T12 93-205 Sentence denotes Almost complete (29,851 nucleotides) genomes of case 1, case 3 and a fragmented genome for case 2 were obtained.
T13 206-365 Sentence denotes The sequences of Indian SARS-CoV-2 though not identical showed high (~99.98%) identity with Wuhan seafood market pneumonia virus (accession number: NC 045512).
T14 366-452 Sentence denotes Phylogenetic analysis showed that the Indian sequences belonged to different clusters.
T15 453-626 Sentence denotes Predicted linear B-cell epitopes were found to be concentrated in the S1 domain of spike protein, and a conformational epitope was identified in the receptor-binding domain.
T16 627-769 Sentence denotes The predicted T-cell epitopes showed broad human leucocyte antigen allele coverage of A and B supertypes predominant in the Indian population.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 319-328 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090