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PMC:7258756 / 856-1634 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
25 545-550 Gene denotes spike Gene:43740568
26 90-100 Species denotes SARS-CoV-2 Tax:2697049
27 239-249 Species denotes SARS-CoV-2 Tax:2697049
28 307-343 Species denotes Wuhan seafood market pneumonia virus Tax:2697049
29 679-684 Species denotes human Tax:9606

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T6 126-137 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T7 139-146 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T8 182-188 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T9 481-485 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T10 551-558 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T11 652-656 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T12 685-694 Body_part denotes leucocyte http://purl.org/sig/ont/fma/fma62852

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T13 90-98 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 90-94 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T15 239-247 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 239-243 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 328-337 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T10 26-27 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 169-170 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 338-343 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T13 479-485 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T14 532-534 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T15 564-565 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 650-656 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T17 679-684 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T18 685-694 http://purl.obolibrary.org/obo/CL_0000738 denotes leucocyte
T19 722-723 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T20 728-729 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 126-137 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T2 551-558 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T3 581-588 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T4 695-702 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T10 0-8 Sentence denotes Results:
T11 9-101 Sentence denotes Three cases with a travel history from Wuhan, China, were confirmed positive for SARS-CoV-2.
T12 102-214 Sentence denotes Almost complete (29,851 nucleotides) genomes of case 1, case 3 and a fragmented genome for case 2 were obtained.
T13 215-374 Sentence denotes The sequences of Indian SARS-CoV-2 though not identical showed high (~99.98%) identity with Wuhan seafood market pneumonia virus (accession number: NC 045512).
T14 375-461 Sentence denotes Phylogenetic analysis showed that the Indian sequences belonged to different clusters.
T15 462-635 Sentence denotes Predicted linear B-cell epitopes were found to be concentrated in the S1 domain of spike protein, and a conformational epitope was identified in the receptor-binding domain.
T16 636-778 Sentence denotes The predicted T-cell epitopes showed broad human leucocyte antigen allele coverage of A and B supertypes predominant in the Indian population.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 328-337 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090