PMC:7258756 / 7744-8766
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 145 | 918-921 | Gene | denotes | CLC | Gene:1178 |
| 146 | 881-884 | Gene | denotes | CLC | Gene:1178 |
| 147 | 7-17 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 148 | 180-190 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 149 | 1011-1021 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T33 | 95-98 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T34 | 239-242 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T35 | 353-356 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T36 | 394-397 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T37 | 438-441 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T73 | 7-15 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T74 | 7-11 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T75 | 117-119 | Disease | denotes | TS | http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455 |
| T77 | 180-188 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T78 | 180-184 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T79 | 881-884 | Disease | denotes | CLC | http://purl.obolibrary.org/obo/MONDO_0004315 |
| T80 | 918-921 | Disease | denotes | CLC | http://purl.obolibrary.org/obo/MONDO_0004315 |
| T81 | 1011-1019 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T82 | 1011-1015 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T68 | 386-387 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T69 | 881-884 | http://purl.obolibrary.org/obo/CLO_0002494 | denotes | CLC |
| T70 | 918-921 | http://purl.obolibrary.org/obo/CLO_0002494 | denotes | CLC |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T17 | 117-119 | Chemical | denotes | TS | http://purl.obolibrary.org/obo/CHEBI_73664 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T61 | 0-84 | Sentence | denotes | NGS of SARS-CoV-2 from India - Phylogenetic analysis and molecular characterization: |
| T62 | 85-225 | Sentence | denotes | The total RNA of three positive TS specimens from Kerala, was extracted from 250-300 μl of the SARS-CoV-2 real-time RT-PCR positive samples. |
| T63 | 226-338 | Sentence | denotes | QIAamp Viral RNA extraction kit (QIAGEN, Hilden, Germany) was used according to the manufacturer's instructions. |
| T64 | 339-437 | Sentence | denotes | The extracted RNA was further quantified using a Qubit RNA High-Sensitivity kit (Invitrogen, USA). |
| T65 | 438-644 | Sentence | denotes | RNA libraries were prepared as per the earlier-defined protocol and quantified using KAPA Library Quantification Kit (Kapa Biosystems, Roche Diagnostics Corporation, USA) as per the manufacturer's protocol. |
| T66 | 645-743 | Sentence | denotes | Further, individual libraries were neutralized and loaded on the Miniseq platform (Illumina, USA). |
| T67 | 744-824 | Sentence | denotes | The detailed protocols for the steps undertaken have been published earlier1516. |
| T68 | 825-940 | Sentence | denotes | The data generated from the machine were analyzed using CLC genomics workbench version 11.0 (CLC, QIAGEN, Germany). |
| T69 | 941-1022 | Sentence | denotes | Reference-based mapping was performed to retrieve the sequence of the SARS-CoV-2. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32242873-29664366-47036564 | 819-821 | 29664366 | denotes | 15 |
| T53539 | 819-821 | 29664366 | denotes | 15 |