PMC:7258756 / 476-854 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"15","span":{"begin":118,"end":122},"obj":"Gene"},{"id":"16","span":{"begin":128,"end":132},"obj":"Gene"},{"id":"17","span":{"begin":141,"end":142},"obj":"Gene"},{"id":"18","span":{"begin":94,"end":95},"obj":"Gene"},{"id":"19","span":{"begin":341,"end":351},"obj":"Species"}],"attributes":[{"id":"A15","pred":"tao:has_database_id","subj":"15","obj":"Gene:43740578"},{"id":"A16","pred":"tao:has_database_id","subj":"16","obj":"Gene:43740578"},{"id":"A17","pred":"tao:has_database_id","subj":"17","obj":"Gene:43740575"},{"id":"A18","pred":"tao:has_database_id","subj":"18","obj":"Gene:43740570"},{"id":"A19","pred":"tao:has_database_id","subj":"19","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Methods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T2","span":{"begin":9,"end":15},"obj":"Body_part"},{"id":"T3","span":{"begin":96,"end":100},"obj":"Body_part"},{"id":"T4","span":{"begin":143,"end":147},"obj":"Body_part"},{"id":"T5","span":{"begin":316,"end":320},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma228738"},{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A4","pred":"fma_id","subj":"T4","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A5","pred":"fma_id","subj":"T5","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"Methods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T1","span":{"begin":9,"end":15},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0000341"}],"text":"Methods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T11","span":{"begin":341,"end":349},"obj":"Disease"},{"id":"T12","span":{"begin":341,"end":345},"obj":"Disease"}],"attributes":[{"id":"A11","pred":"mondo_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Methods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T5","span":{"begin":46,"end":47},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T6","span":{"begin":96,"end":100},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T7","span":{"begin":143,"end":147},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T8","span":{"begin":307,"end":308},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T9","span":{"begin":314,"end":320},"obj":"http://purl.obolibrary.org/obo/CL_0000084"}],"text":"Methods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T1","span":{"begin":158,"end":179},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T2","span":{"begin":166,"end":179},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"Methods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken."}

{"project":"LitCovid-sentences","denotations":[{"id":"T7","span":{"begin":0,"end":8},"obj":"Sentence"},{"id":"T8","span":{"begin":9,"end":238},"obj":"Sentence"},{"id":"T9","span":{"begin":239,"end":378},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Methods:\nThroat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing. Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken."}