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PMC:7258756 / 36492-37447 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
547 87-92 Gene denotes IFN-γ Gene:3458
548 241-246 Gene denotes IFN-γ Gene:3458
549 424-429 Gene denotes IFN-γ Gene:3458
550 4-9 Gene denotes spike Gene:43740568
551 21-29 Species denotes SARS-CoV Tax:694009

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T244 10-17 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T245 104-108 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T246 278-285 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T247 322-326 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T248 345-352 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T249 554-558 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T250 751-754 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T251 800-803 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T202 21-29 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T203 21-25 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T297 30-33 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T298 102-108 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T299 287-288 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T300 320-326 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T301 362-363 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T302 552-558 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T303 639-641 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T304 682-684 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T305 682-684 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T306 743-744 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T307 774-775 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T308 780-781 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T160 10-17 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T161 278-285 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T162 345-352 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T163 682-684 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T242 0-120 Sentence denotes The spike protein of SARS-CoV has also been reported to be immunogenic and elicit high IFN-γ-specific T-cell response26.
T243 121-286 Sentence denotes The prediction results in this study revealed that nine possible CTL epitopes possessing good antigenicity and inducing IFN-γ response were present in the S protein.
T244 287-410 Sentence denotes A recent report27 also predicted T-cell epitopes in the S protein based on a similar ANN/SVM method and antigenicity score.
T245 411-541 Sentence denotes Although the IFN-γ response was not considered by these authors, it was noted that two of the predictions were found to be common.
T246 542-793 Sentence denotes Among the T-cell epitopes predicted in the present study, four epitopes 89-97 and 256-264 in the S1 domain and 825-833 and 1058-1066 in the S2 domain were found to have good CTL prediction scores with a broad HLA allele coverage of A and B supertypes.
T247 794-955 Sentence denotes These HLA supertypes being predominant in the Indian population, the predicted epitopes may be considered suitable for future experiments towards vaccine design.

2_test

Id Subject Object Predicate Lexical cue
32242873-26038429-47036576 117-119 26038429 denotes 26
32242873-32022276-47036577 302-304 32022276 denotes 27
T63478 117-119 26038429 denotes 26
T36379 302-304 32022276 denotes 27