PMC:7258756 / 36492-37447
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
547 | 87-92 | Gene | denotes | IFN-γ | Gene:3458 |
548 | 241-246 | Gene | denotes | IFN-γ | Gene:3458 |
549 | 424-429 | Gene | denotes | IFN-γ | Gene:3458 |
550 | 4-9 | Gene | denotes | spike | Gene:43740568 |
551 | 21-29 | Species | denotes | SARS-CoV | Tax:694009 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T244 | 10-17 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T245 | 104-108 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T246 | 278-285 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T247 | 322-326 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T248 | 345-352 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T249 | 554-558 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T250 | 751-754 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T251 | 800-803 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T202 | 21-29 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T203 | 21-25 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T297 | 30-33 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T298 | 102-108 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T-cell |
T299 | 287-288 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T300 | 320-326 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T-cell |
T301 | 362-363 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T302 | 552-558 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T-cell |
T303 | 639-641 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T304 | 682-684 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T305 | 682-684 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T306 | 743-744 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T307 | 774-775 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T308 | 780-781 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T160 | 10-17 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T161 | 278-285 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T162 | 345-352 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T163 | 682-684 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T242 | 0-120 | Sentence | denotes | The spike protein of SARS-CoV has also been reported to be immunogenic and elicit high IFN-γ-specific T-cell response26. |
T243 | 121-286 | Sentence | denotes | The prediction results in this study revealed that nine possible CTL epitopes possessing good antigenicity and inducing IFN-γ response were present in the S protein. |
T244 | 287-410 | Sentence | denotes | A recent report27 also predicted T-cell epitopes in the S protein based on a similar ANN/SVM method and antigenicity score. |
T245 | 411-541 | Sentence | denotes | Although the IFN-γ response was not considered by these authors, it was noted that two of the predictions were found to be common. |
T246 | 542-793 | Sentence | denotes | Among the T-cell epitopes predicted in the present study, four epitopes 89-97 and 256-264 in the S1 domain and 825-833 and 1058-1066 in the S2 domain were found to have good CTL prediction scores with a broad HLA allele coverage of A and B supertypes. |
T247 | 794-955 | Sentence | denotes | These HLA supertypes being predominant in the Indian population, the predicted epitopes may be considered suitable for future experiments towards vaccine design. |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32242873-26038429-47036576 | 117-119 | 26038429 | denotes | 26 |
32242873-32022276-47036577 | 302-304 | 32022276 | denotes | 27 |
T63478 | 117-119 | 26038429 | denotes | 26 |
T36379 | 302-304 | 32022276 | denotes | 27 |