PMC:7258756 / 2908-4234
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 78 | 1312-1317 | Gene | denotes | spike | Gene:43740568 |
| 79 | 359-368 | Species | denotes | novel CoV | Tax:2697049 |
| 80 | 376-385 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 81 | 595-610 | Species | denotes | Betacoronavirus | Tax:694002 |
| 82 | 626-639 | Species | denotes | Coronaviridae | Tax:11118 |
| 83 | 732-735 | Species | denotes | CoV | Tax:11118 |
| 84 | 806-812 | Species | denotes | humans | Tax:9606 |
| 85 | 856-864 | Species | denotes | SARS-CoV | Tax:694009 |
| 86 | 882-891 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 87 | 908-918 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 88 | 982-992 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 89 | 1185-1195 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 90 | 53-62 | Disease | denotes | pneumonia | MESH:D011014 |
| 91 | 203-212 | Disease | denotes | pneumonia | MESH:D011014 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T17 | 448-451 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T18 | 465-471 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T19 | 1083-1089 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T29 | 53-62 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T30 | 722-726 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T31 | 856-864 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T32 | 856-860 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T33 | 908-916 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T34 | 908-912 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T35 | 982-990 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T36 | 982-986 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T37 | 1185-1193 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T38 | 1185-1189 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T36 | 215-220 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
| T37 | 292-297 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T38 | 357-358 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T39 | 392-397 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T40 | 452-457 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T41 | 463-464 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T42 | 710-713 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T43 | 745-748 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T44 | 764-767 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T45 | 806-812 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T46 | 828-833 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T47 | 917-919 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T48 | 1095-1098 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T49 | 1114-1117 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T5 | 749-751 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T6 | 768-770 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T7 | 1099-1101 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T8 | 1118-1120 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T9 | 1169-1174 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T27 | 0-119 | Sentence | denotes | Recently in December 2019, China reported cases with pneumonia of unknown aetiology in the Hubei province, Wuhan city4. |
| T28 | 120-214 | Sentence | denotes | Further analysis of these cases was carried out to identify the causative agent of pneumonia5. |
| T29 | 215-387 | Sentence | denotes | Virus isolation and genomic characterization of the complete sequence of the virus through next-generation sequencing (NGS), identified it as a novel CoV, named 2019-nCoV3. |
| T30 | 388-490 | Sentence | denotes | The virus characterization revealed that it is an enveloped RNA virus with a genome size of 29,903 bp. |
| T31 | 491-640 | Sentence | denotes | The phylogenetic analysis of the sequence showed that it belonged to the Sarbecovirus subgenus of genus Betacoronavirus and the family Coronaviridae. |
| T32 | 641-877 | Sentence | denotes | The sequence was closely related (~87.5% sequence similarity) to two bat-derived SARS-like CoV strains (bat-SL-CoVZC45 and bat-SL-CoVZXC21) that are known to infect humans, including the virus which led to the 2003 SARS-CoV-1 outbreak6. |
| T33 | 878-920 | Sentence | denotes | The 2019-nCoV is now named as SARS-CoV-27. |
| T34 | 921-1090 | Sentence | denotes | Further, based on SimPlot analyses, it was demonstrated that SARS-CoV-2 was more closely related to the BatCoV RaTG13 sequence (~96.3% similarity) throughout the genome. |
| T35 | 1091-1326 | Sentence | denotes | The bat-SL-CoVZC45 and bat-SL-CoVZXC21 strains clustered differently from the group formed by SARS-CoV-2 and BatCoV RaTG13 in the region spanning the 3′-end of open reading frame (ORF)1a, the ORF1b and almost half of the spike region8. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T2 | 53-62 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |