PMC:7258756 / 21320-21868 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"312","span":{"begin":353,"end":357},"obj":"CellLine"},{"id":"313","span":{"begin":419,"end":424},"obj":"CellLine"},{"id":"314","span":{"begin":461,"end":466},"obj":"CellLine"},{"id":"324","span":{"begin":143,"end":148},"obj":"Gene"},{"id":"325","span":{"begin":95,"end":142},"obj":"Species"}],"attributes":[{"id":"A312","pred":"tao:has_database_id","subj":"312","obj":"CVCL:5G71"},{"id":"A313","pred":"tao:has_database_id","subj":"313","obj":"CVCL:0317"},{"id":"A314","pred":"tao:has_database_id","subj":"314","obj":"CVCL:A471"},{"id":"A324","pred":"tao:has_database_id","subj":"324","obj":"Gene:43740568"},{"id":"A325","pred":"tao:has_database_id","subj":"325","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"nformational B-cell epitopes predicted by Ellipro based on the chains A, B and C of the Indian severe acute respiratory syndrome coronavirus 2 spike protein modelled structure (template used: 6VSB.PDB). Ellipro protusion Index threshold set to 0.8 cut-off\nChain A Ellipro Score\n1 D1137, P1138, L1139, Q1140, P1141, E1142, L1143, D1144 0.984\n2 Y705, S706, N707, N708, S709, T1074, T1075, A1076, P1077, A1078, I1079, C1080, H1081, D1082, G1083, K1084, A1085, H1086, F1087, P1088, R1089, E1090, G1091, F1093, V1094, S1095, N1096, G1097, T1098, H10"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T103","span":{"begin":15,"end":19},"obj":"Body_part"},{"id":"T104","span":{"begin":149,"end":156},"obj":"Body_part"}],"attributes":[{"id":"A103","pred":"fma_id","subj":"T103","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A104","pred":"fma_id","subj":"T104","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"nformational B-cell epitopes predicted by Ellipro based on the chains A, B and C of the Indian severe acute respiratory syndrome coronavirus 2 spike protein modelled structure (template used: 6VSB.PDB). Ellipro protusion Index threshold set to 0.8 cut-off\nChain A Ellipro Score\n1 D1137, P1138, L1139, Q1140, P1141, E1142, L1143, D1144 0.984\n2 Y705, S706, N707, N708, S709, T1074, T1075, A1076, P1077, A1078, I1079, C1080, H1081, D1082, G1083, K1084, A1085, H1086, F1087, P1088, R1089, E1090, G1091, F1093, V1094, S1095, N1096, G1097, T1098, H10"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T161","span":{"begin":95,"end":142},"obj":"Disease"},{"id":"T162","span":{"begin":95,"end":128},"obj":"Disease"}],"attributes":[{"id":"A161","pred":"mondo_id","subj":"T161","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A162","pred":"mondo_id","subj":"T162","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"nformational B-cell epitopes predicted by Ellipro based on the chains A, B and C of the Indian severe acute respiratory syndrome coronavirus 2 spike protein modelled structure (template used: 6VSB.PDB). Ellipro protusion Index threshold set to 0.8 cut-off\nChain A Ellipro Score\n1 D1137, P1138, L1139, Q1140, P1141, E1142, L1143, D1144 0.984\n2 Y705, S706, N707, N708, S709, T1074, T1075, A1076, P1077, A1078, I1079, C1080, H1081, D1082, G1083, K1084, A1085, H1086, F1087, P1088, R1089, E1090, G1091, F1093, V1094, S1095, N1096, G1097, T1098, H10"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T134","span":{"begin":13,"end":19},"obj":"http://purl.obolibrary.org/obo/CL_0000236"},{"id":"T135","span":{"begin":70,"end":71},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T136","span":{"begin":73,"end":74},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T137","span":{"begin":262,"end":263},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T138","span":{"begin":454,"end":459},"obj":"http://purl.obolibrary.org/obo/CLO_0001552"}],"text":"nformational B-cell epitopes predicted by Ellipro based on the chains A, B and C of the Indian severe acute respiratory syndrome coronavirus 2 spike protein modelled structure (template used: 6VSB.PDB). Ellipro protusion Index threshold set to 0.8 cut-off\nChain A Ellipro Score\n1 D1137, P1138, L1139, Q1140, P1141, E1142, L1143, D1144 0.984\n2 Y705, S706, N707, N708, S709, T1074, T1075, A1076, P1077, A1078, I1079, C1080, H1081, D1082, G1083, K1084, A1085, H1086, F1087, P1088, R1089, E1090, G1091, F1093, V1094, S1095, N1096, G1097, T1098, H10"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T111","span":{"begin":149,"end":156},"obj":"Chemical"}],"attributes":[{"id":"A111","pred":"chebi_id","subj":"T111","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":"nformational B-cell epitopes predicted by Ellipro based on the chains A, B and C of the Indian severe acute respiratory syndrome coronavirus 2 spike protein modelled structure (template used: 6VSB.PDB). Ellipro protusion Index threshold set to 0.8 cut-off\nChain A Ellipro Score\n1 D1137, P1138, L1139, Q1140, P1141, E1142, L1143, D1144 0.984\n2 Y705, S706, N707, N708, S709, T1074, T1075, A1076, P1077, A1078, I1079, C1080, H1081, D1082, G1083, K1084, A1085, H1086, F1087, P1088, R1089, E1090, G1091, F1093, V1094, S1095, N1096, G1097, T1098, H10"}

{"project":"LitCovid-sentences","denotations":[{"id":"T161","span":{"begin":192,"end":202},"obj":"Sentence"},{"id":"T162","span":{"begin":203,"end":255},"obj":"Sentence"},{"id":"T163","span":{"begin":256,"end":278},"obj":"Sentence"},{"id":"T164","span":{"begin":279,"end":343},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"nformational B-cell epitopes predicted by Ellipro based on the chains A, B and C of the Indian severe acute respiratory syndrome coronavirus 2 spike protein modelled structure (template used: 6VSB.PDB). Ellipro protusion Index threshold set to 0.8 cut-off\nChain A Ellipro Score\n1 D1137, P1138, L1139, Q1140, P1141, E1142, L1143, D1144 0.984\n2 Y705, S706, N707, N708, S709, T1074, T1075, A1076, P1077, A1078, I1079, C1080, H1081, D1082, G1083, K1084, A1085, H1086, F1087, P1088, R1089, E1090, G1091, F1093, V1094, S1095, N1096, G1097, T1098, H10"}