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PMC:7258756 / 21294-25847 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
309 1375-1378 Gene denotes K77 Gene:374454
310 2789-2792 Gene denotes K77 Gene:374454
311 4287-4290 Gene denotes K77 Gene:374454
312 379-383 CellLine denotes S706 CVCL:5G71
313 445-450 CellLine denotes C1080 CVCL:0317
314 487-492 CellLine denotes H1086 CVCL:A471
315 1665-1669 CellLine denotes S706 CVCL:5G71
316 1738-1743 CellLine denotes C1080 CVCL:0317
317 1780-1785 CellLine denotes H1086 CVCL:A471
318 3107-3111 CellLine denotes A261 CVCL:2490
319 3201-3205 CellLine denotes S706 CVCL:5G71
320 3267-3272 CellLine denotes C1080 CVCL:0317
321 3309-3314 CellLine denotes H1086 CVCL:A471
324 169-174 Gene denotes spike Gene:43740568
325 121-168 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T103 41-45 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T104 175-182 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T161 121-168 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T162 121-154 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T134 39-45 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T135 96-97 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T136 99-100 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T137 288-289 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T138 480-485 http://purl.obolibrary.org/obo/CLO_0001552 denotes A1085
T139 1087-1091 http://purl.obolibrary.org/obo/CLO_0053731 denotes S467
T140 1335-1338 http://purl.obolibrary.org/obo/CLO_0003609 denotes H69
T141 1648-1649 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T142 1653-1657 http://purl.obolibrary.org/obo/CLO_0001609 denotes A704
T143 1773-1778 http://purl.obolibrary.org/obo/CLO_0001552 denotes A1085
T144 2262-2266 http://purl.obolibrary.org/obo/CLO_0003435 denotes G402
T145 2496-2500 http://purl.obolibrary.org/obo/CLO_0053731 denotes S467
T146 2749-2752 http://purl.obolibrary.org/obo/CLO_0003609 denotes H69
T147 2837-2841 http://purl.obolibrary.org/obo/CLO_0001555 denotes A123
T148 3302-3307 http://purl.obolibrary.org/obo/CLO_0001552 denotes A1085
T149 3999-4003 http://purl.obolibrary.org/obo/CLO_0053731 denotes S467
T150 4247-4250 http://purl.obolibrary.org/obo/CLO_0003609 denotes H69

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T110 20-22 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T111 175-182 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 1350-1353 GlycoEpitope denotes G72 http://www.glycoepitope.jp/epitopes/AN0029
T2 2764-2767 GlycoEpitope denotes G72 http://www.glycoepitope.jp/epitopes/AN0029
T3 4262-4265 GlycoEpitope denotes G72 http://www.glycoepitope.jp/epitopes/AN0029

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T160 0-217 Sentence denotes Supplementary Table II Conformational B-cell epitopes predicted by Ellipro based on the chains A, B and C of the Indian severe acute respiratory syndrome coronavirus 2 spike protein modelled structure (template used:
T161 218-228 Sentence denotes 6VSB.PDB).
T162 229-281 Sentence denotes Ellipro protusion Index threshold set to 0.8 cut-off
T163 282-304 Sentence denotes Chain A Ellipro Score
T164 305-369 Sentence denotes 1 D1137, P1138, L1139, Q1140, P1141, E1142, L1143, D1144 0.984
T165 370-717 Sentence denotes 2 Y705, S706, N707, N708, S709, T1074, T1075, A1076, P1077, A1078, I1079, C1080, H1081, D1082, G1083, K1084, A1085, H1086, F1087, P1088, R1089, E1090, G1091, F1093, V1094, S1095, N1096, G1097, T1098, H1099, W1100, F1101, V1102, Y1108, E1109, P1110, Q1111, I1112, I1113, T1114, T1115, D1116, N1117, T1118, F1119, V1120, S1121, G1122, N1123, 0.906
T166 718-1326 Sentence denotes 3 N341, A342, T343, R344, F345, A346, S347, V348, Y349, A350, W351, N352, S397, F398, V399, I400, R401, E404, Q412, T413, G414, K415, I416, A417, D418, Y419, N420, Y421, K422, L423, S436, N437, N438, L439, D440, S441, K442, V443, G444, G445, N446, Y447, N448, Y449, L450, Y451, R452, L453, F454, R455, K456, S457, N458, L459, K460, P461, F462, E463, R464, D465, I466, S467, T468, E469, I470, Y471, Q472, A473, G474, S475, T476, P477, C478, N479, G480, V481, G483, F484, N485, C486, Y487, F488, P489, L490, Q491, S492, Y493, G494, F495, Q496, P497, T498, N499, G500, V501, G502, Y503, Q504, P505, R507 0.887
T167 1327-1641 Sentence denotes 4 I68, H69, V70, S71, G72, T73, N74, G75, T76, K77, R78, S98, I100, C136, D138, F140, G142, Y143, H144, K145, N146, N147, K148, S149, W150, M151, E152, S153, E154, F155, R156, N183, F184, A241, L242, H243, R244, S245, Y246, L247, T248, P249, G250, D251, S252, S253, S254, G255, W256, T257, A258, G259, A260 0.876
T168 1642-1649 Sentence denotes Chain B
T169 1650-2186 Sentence denotes 1 A704, Y705, S706, N707, N708, S709, F1073, T1074, T1075, A1076, P1077, A1078, I1079, C1080, H1081, D1082, G1083, K1084, A1085, H1086, F1087, P1088, R1089,E1090, G1091, V1092,F1093, V1094, S1095, N1096, G1097, T1098, H1099, W1100, F1101, V1102, T1103, Q1104, R1105, F1107, Y1108, E1109,P1110, Q1111, I1112, I1113, T1114, T1115, D1116, N1117, T1118, F1119, V1120, S1121, G1122, N1123, C1124, D1125, V1126, V1127, I1128, G1129, I1130, V1131, N1132, N1133, T1134, V1135, Y1136, D1137, P1138, L1139, Q1140,P1141,E1142, L1143, D1144 0.902
T170 2187-2735 Sentence denotes 2 N341, A342, T343, F345, A346, S347, V348, Y349, A350, W351, V399, R401, G402, T413, G414, K415, D418, Y419, N420, Y421, K422, S436, N437, N438, L439, D440, S441, K442, V443, G444, G445, N446, Y447, N448, Y449, L450, Y451, R452, L453, F454, R455, K456, S457, N458, L459, K460, P461, E463, R464, D465, I466, S467, T468, E469, I470, Y471, Q472, A473, G474, S475, T476, P477, C478, N479, G480, V481, E482, G483, F484, N485, C486, Y487, F488, P489, L490, Q491, S492, Y493, G494, F495, Q496, P497, T498, N499, G500, V501, G502, Y503, Q504, P505 0.886
T171 2736-3118 Sentence denotes 3 A67, I68, H69, V70, S71, G72, T73, N74, G75, T76, K77, R78, E96, K97, S98, N99, I100, R102, N122, A123, T124, N125, C136, N137, D138, P139, F140, L141, G142, Y143, H144, K145, N146, N147, K148, S149, W150, M151, E152, S153, E154, F155, L239, L240, A241, L242, H243, R244, S245, Y246, L247, T248, P249, G250, D251, S252, S253, S254, G255, W256, T257, A258, G259, A260, A261 0.869
T172 3119-3126 Sentence denotes Chain C
T173 3127-3191 Sentence denotes 1 D1137, P1138, L1139, Q1140, P1141, E1142, L1143, D1144 0.984
T174 3192-3629 Sentence denotes 2 Y705, S706, N707, N708, S709, T1074, T1075, A1076, P1077, A1078, I1079, C1080, H1081, D1082, G1083, K1084, A1085, H1086, F1087, P1088, R1089, E1090, G1091, F1093, V1094, S1095, N1096, G1097, T1098, H1099, W1100, F1101, V1102, Y1108, E1109, P1110, Q1111, I1112, I1113, T1114, T1115, D1116, N1117, T1118, F1119, V1120, S1121, G1122, N1123, C1124, D1125, V1126, V1127, I1128, G1129, I1130, V1131, N1132, N1133, T1134, V1135, Y1136 0.906
T175 3630-4238 Sentence denotes 3 N341, A342, T343, R344, F345, A346, S347, V348, Y349, A350, W351, N352, S397, F398, V399, I400, R401, E404, Q412, T413, G414, K415, I416, A417, D418, Y419, N420, Y421, K422, L423, S436, N437, N438, L439, D440, S441, K442, V443, G444, G445, N446, Y447, N448, Y449, L450, Y451, R452, L453, F454, R455, K456, S457, N458, L459, K460, P461, F462, E463, R464, D465, I466, S467, T468, E469, I470, Y471, Q472, A473, G474, S475, T476, P477, C478, N479, G480, V481, G483, F484, N485, C486, Y487, F488, P489, L490, Q491, S492, Y493, G494, F495, Q496, P497, T498, N499, G500, V501, G502, Y503, Q504, P505, R507 0.887
T176 4239-4553 Sentence denotes 4 I68, H69, V70, S71, G72, T73, N74, G75, T76, K77, R78, S98, I100, C136, D138, F140, G142, Y143, H144, K145, N146, N147, K148, S149, W150, M151, E152, S153, E154, F155, R156, N183, F184, A241, L242, H243, R244, S245, Y246, L247, T248, P249, G250, D251, S252, S253, S254, G255, W256, T257, A258, G259, A260 0.876