PMC:7258756 / 13782-14342
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 199 | 60-70 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 201 | 405-415 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 208 | 159-163 | Gene | denotes | RdRp | Gene:43740578 |
| 209 | 169-173 | Gene | denotes | RdRp | Gene:43740578 |
| 210 | 190-191 | Gene | denotes | N | Gene:43740575 |
| 211 | 179-180 | Gene | denotes | E | Gene:43740570 |
| 212 | 258-305 | Species | denotes | severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
| 213 | 307-317 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T67 | 12-17 | Body_part | denotes | Blood | http://purl.org/sig/ont/fma/fma9670 |
| T68 | 181-185 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T69 | 192-196 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T70 | 207-213 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T71 | 446-452 | Body_part | denotes | Genome | http://purl.org/sig/ont/fma/fma84116 |
| T72 | 485-491 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T73 | 523-527 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T74 | 531-535 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T4 | 12-17 | Body_part | denotes | Blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T105 | 60-68 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T106 | 60-64 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T107 | 258-305 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T108 | 258-291 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T109 | 307-315 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T110 | 307-311 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T111 | 405-413 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T112 | 405-409 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T99 | 12-17 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | Blood |
| T100 | 12-17 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | Blood |
| T101 | 181-185 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T102 | 192-196 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T103 | 476-479 | http://purl.obolibrary.org/obo/CLO_0008190 | denotes | Per |
| T104 | 523-527 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T105 | 531-535 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16 | 91-112 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | reverse transcription |
| T17 | 99-112 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
| T18 | 537-544 | http://purl.obolibrary.org/obo/GO_0004526 | denotes | Rnase P |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T105 | 12-71 | Sentence | denotes | Blood samples were found to be negative for the SARS-CoV-2. |
| T106 | 72-333 | Sentence | denotes | Table I Real-time reverse transcription-polymerase chain reaction (RT-PCR) values for RdRp (1), RdRp (2), E gene and N gene, per cent genome coverage recovered and reads mapped for the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) positive cases |
| T107 | 334-500 | Sentence | denotes | Positive cases Ct values for real-time RT-PCR for the confirmation of SARS-CoV-2 Relevant reads Total reads Genome length recovered (bp) Per cent genome coverage |