PMC:7258756 / 1368-1904 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"25","span":{"begin":33,"end":38},"obj":"Gene"},{"id":"29","span":{"begin":167,"end":172},"obj":"Species"},{"id":"32","span":{"begin":306,"end":316},"obj":"Species"}],"attributes":[{"id":"A25","pred":"tao:has_database_id","subj":"25","obj":"Gene:43740568"},{"id":"A29","pred":"tao:has_database_id","subj":"29","obj":"Tax:9606"},{"id":"A32","pred":"tao:has_database_id","subj":"32","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"concentrated in the S1 domain of spike protein, and a conformational epitope was identified in the receptor-binding domain. The predicted T-cell epitopes showed broad human leucocyte antigen allele coverage of A and B supertypes predominant in the Indian population.\n\nInterpretation \u0026 conclusions:\nThe two SARS-CoV-2 sequences obtained from India represent two different introductions into the country. The genetic heterogeneity is as noted globally. The identified B- and T-cell epitopes may be considered suitable for future experimen"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T10","span":{"begin":39,"end":46},"obj":"Body_part"},{"id":"T11","span":{"begin":140,"end":144},"obj":"Body_part"},{"id":"T12","span":{"begin":173,"end":182},"obj":"Body_part"},{"id":"T13","span":{"begin":475,"end":479},"obj":"Body_part"}],"attributes":[{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A11","pred":"fma_id","subj":"T11","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A12","pred":"fma_id","subj":"T12","obj":"http://purl.org/sig/ont/fma/fma62852"},{"id":"A13","pred":"fma_id","subj":"T13","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"concentrated in the S1 domain of spike protein, and a conformational epitope was identified in the receptor-binding domain. The predicted T-cell epitopes showed broad human leucocyte antigen allele coverage of A and B supertypes predominant in the Indian population.\n\nInterpretation \u0026 conclusions:\nThe two SARS-CoV-2 sequences obtained from India represent two different introductions into the country. The genetic heterogeneity is as noted globally. The identified B- and T-cell epitopes may be considered suitable for future experimen"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T18","span":{"begin":306,"end":314},"obj":"Disease"},{"id":"T19","span":{"begin":306,"end":310},"obj":"Disease"}],"attributes":[{"id":"A18","pred":"mondo_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A19","pred":"mondo_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"concentrated in the S1 domain of spike protein, and a conformational epitope was identified in the receptor-binding domain. The predicted T-cell epitopes showed broad human leucocyte antigen allele coverage of A and B supertypes predominant in the Indian population.\n\nInterpretation \u0026 conclusions:\nThe two SARS-CoV-2 sequences obtained from India represent two different introductions into the country. The genetic heterogeneity is as noted globally. The identified B- and T-cell epitopes may be considered suitable for future experimen"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T14","span":{"begin":20,"end":22},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T15","span":{"begin":52,"end":53},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T16","span":{"begin":138,"end":144},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T17","span":{"begin":167,"end":172},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T18","span":{"begin":173,"end":182},"obj":"http://purl.obolibrary.org/obo/CL_0000738"},{"id":"T19","span":{"begin":210,"end":211},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T20","span":{"begin":216,"end":217},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T21","span":{"begin":466,"end":467},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T22","span":{"begin":473,"end":479},"obj":"http://purl.obolibrary.org/obo/CL_0000084"}],"text":"concentrated in the S1 domain of spike protein, and a conformational epitope was identified in the receptor-binding domain. The predicted T-cell epitopes showed broad human leucocyte antigen allele coverage of A and B supertypes predominant in the Indian population.\n\nInterpretation \u0026 conclusions:\nThe two SARS-CoV-2 sequences obtained from India represent two different introductions into the country. The genetic heterogeneity is as noted globally. The identified B- and T-cell epitopes may be considered suitable for future experimen"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T2","span":{"begin":39,"end":46},"obj":"Chemical"},{"id":"T3","span":{"begin":69,"end":76},"obj":"Chemical"},{"id":"T4","span":{"begin":183,"end":190},"obj":"Chemical"}],"attributes":[{"id":"A2","pred":"chebi_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A3","pred":"chebi_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CHEBI_53000"},{"id":"A4","pred":"chebi_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CHEBI_59132"}],"text":"concentrated in the S1 domain of spike protein, and a conformational epitope was identified in the receptor-binding domain. The predicted T-cell epitopes showed broad human leucocyte antigen allele coverage of A and B supertypes predominant in the Indian population.\n\nInterpretation \u0026 conclusions:\nThe two SARS-CoV-2 sequences obtained from India represent two different introductions into the country. The genetic heterogeneity is as noted globally. The identified B- and T-cell epitopes may be considered suitable for future experimen"}

{"project":"LitCovid-sentences","denotations":[{"id":"T16","span":{"begin":124,"end":266},"obj":"Sentence"},{"id":"T17","span":{"begin":268,"end":297},"obj":"Sentence"},{"id":"T18","span":{"begin":298,"end":402},"obj":"Sentence"},{"id":"T19","span":{"begin":403,"end":450},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"concentrated in the S1 domain of spike protein, and a conformational epitope was identified in the receptor-binding domain. The predicted T-cell epitopes showed broad human leucocyte antigen allele coverage of A and B supertypes predominant in the Indian population.\n\nInterpretation \u0026 conclusions:\nThe two SARS-CoV-2 sequences obtained from India represent two different introductions into the country. The genetic heterogeneity is as noted globally. The identified B- and T-cell epitopes may be considered suitable for future experimen"}