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PMC:7258756 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 39-49 Species denotes SARS-CoV-2 Tax:2697049
6 125-172 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
7 174-184 Species denotes SARS-CoV-2 Tax:2697049
8 267-277 Species denotes SARS-CoV-2 Tax:2697049
9 392-402 Species denotes SARS-CoV-2 Tax:2697049
15 594-598 Gene denotes RdRp Gene:43740578
16 604-608 Gene denotes RdRp Gene:43740578
17 617-618 Gene denotes N Gene:43740575
18 570-571 Gene denotes E Gene:43740570
19 817-827 Species denotes SARS-CoV-2 Tax:2697049
25 1401-1406 Gene denotes spike Gene:43740568
26 946-956 Species denotes SARS-CoV-2 Tax:2697049
27 1095-1105 Species denotes SARS-CoV-2 Tax:2697049
28 1163-1199 Species denotes Wuhan seafood market pneumonia virus Tax:2697049
29 1535-1540 Species denotes human Tax:9606
32 1674-1684 Species denotes SARS-CoV-2 Tax:2697049
33 2148-2158 Species denotes SARS-CoV-2 Tax:2697049
49 2165-2178 Species denotes Coronaviridae Tax:11118
50 2329-2334 Species denotes human Tax:9606
51 2430-2482 Species denotes severe acute respiratory syndrome (SARS) coronavirus Tax:694009
52 2484-2487 Species denotes CoV Tax:11118
53 2529-2535 Species denotes people Tax:9606
54 2619-2624 Species denotes human Tax:9606
55 2651-2687 Species denotes Middle East respiratory syndrome CoV Tax:1335626
56 2689-2697 Species denotes MERS-CoV Tax:1335626
57 2806-2812 Species denotes humans Tax:9606
58 2821-2834 Species denotes Coronaviridae Tax:11118
59 2858-2866 Species denotes SARS-CoV Tax:694009
60 2882-2890 Species denotes SARS-CoV Tax:694009
61 2898-2906 Species denotes MERS-CoV Tax:1335626
62 2346-2356 Disease denotes infections MESH:D007239
63 2391-2413 Disease denotes respiratory infections MESH:D012141
78 4220-4225 Gene denotes spike Gene:43740568
79 3267-3276 Species denotes novel CoV Tax:2697049
80 3284-3293 Species denotes 2019-nCoV Tax:2697049
81 3503-3518 Species denotes Betacoronavirus Tax:694002
82 3534-3547 Species denotes Coronaviridae Tax:11118
83 3640-3643 Species denotes CoV Tax:11118
84 3714-3720 Species denotes humans Tax:9606
85 3764-3772 Species denotes SARS-CoV Tax:694009
86 3790-3799 Species denotes 2019-nCoV Tax:2697049
87 3816-3826 Species denotes SARS-CoV-2 Tax:2697049
88 3890-3900 Species denotes SARS-CoV-2 Tax:2697049
89 4093-4103 Species denotes SARS-CoV-2 Tax:2697049
90 2961-2970 Disease denotes pneumonia MESH:D011014
91 3111-3120 Disease denotes pneumonia MESH:D011014
99 4349-4380 Gene denotes angiotensin-converting enzyme 2 Gene:59272
100 4382-4386 Gene denotes ACE2 Gene:59272
101 4555-4559 Gene denotes ACE2 Gene:59272
102 4493-4498 Gene denotes spike Gene:43740568
103 4276-4281 Gene denotes spike Gene:43740568
104 4432-4441 Species denotes SARS-CoVs Tax:694009
105 4482-4492 Species denotes SARS-CoV-2 Tax:2697049
112 4567-4572 Species denotes human Tax:9606
113 4576-4581 Species denotes human Tax:9606
114 4602-4612 Species denotes SARS-CoV-2 Tax:2697049
115 4734-4744 Species denotes SARS-CoV-2 Tax:2697049
116 4822-4832 Species denotes SARS-CoV-2 Tax:2697049
117 4768-4774 Disease denotes deaths MESH:D003643
122 5671-5681 Species denotes SARS-CoV-2 Tax:2697049
123 5819-5829 Species denotes SARS-CoV-2 Tax:2697049
124 6097-6107 Species denotes SARS-CoV-2 Tax:2697049
125 6188-6198 Species denotes SARS-CoV-2 Tax:2697049
127 6478-6488 Species denotes SARS-CoV-2 Tax:2697049
131 6503-6513 Species denotes SARS-CoV-2 Tax:2697049
132 7095-7105 Species denotes SARS-CoV-2 Tax:2697049
133 6655-6675 Disease denotes SARS-CoV-2 infection MESH:C000657245
137 7448-7452 Gene denotes RdRp Gene:43740578
138 7458-7462 Gene denotes RdRp Gene:43740578
139 7357-7367 Species denotes SARS-CoV-2 Tax:2697049
145 8662-8665 Gene denotes CLC Gene:1178
146 8625-8628 Gene denotes CLC Gene:1178
147 7751-7761 Species denotes SARS-CoV-2 Tax:2697049
148 7924-7934 Species denotes SARS-CoV-2 Tax:2697049
149 8755-8765 Species denotes SARS-CoV-2 Tax:2697049
155 9634-9638 Gene denotes hu-1 Gene:6195
156 8799-8809 Species denotes SARS-CoV-2 Tax:2697049
157 9515-9525 Species denotes SARS-CoV-2 Tax:2697049
158 9602-9612 Species denotes SARS-CoV-2 Tax:2697049
159 9282-9284 Chemical denotes nt MESH:D009711
164 9772-9777 Gene denotes spike Gene:43740568
165 9677-9682 Gene denotes spike Gene:43740568
166 9761-9771 Species denotes SARS-CoV-2 Tax:2697049
167 10222-10232 Species denotes SARS-CoV-2 Tax:2697049
174 12803-12806 Gene denotes TAP Gene:8615
175 12230-12235 Gene denotes spike Gene:43740568
176 10741-10746 Gene denotes spike Gene:43740568
177 10730-10740 Species denotes SARS-CoV-2 Tax:2697049
178 12723-12728 Species denotes human Tax:9606
179 12664-12669 Species denotes human Tax:9606
182 13225-13241 Gene denotes interferon-gamma Gene:3458
183 13243-13248 Gene denotes IFN-γ Gene:3458
192 13555-13559 Gene denotes RdRp Gene:43740578
193 13565-13569 Gene denotes RdRp Gene:43740578
194 13578-13579 Gene denotes N Gene:43740575
195 13547-13548 Gene denotes E Gene:43740570
196 13606-13607 Gene denotes E Gene:43740570
197 13368-13378 Species denotes SARS-CoV-2 Tax:2697049
198 13497-13507 Species denotes SARS-CoV-2 Tax:2697049
199 13842-13852 Species denotes SARS-CoV-2 Tax:2697049
201 14187-14197 Species denotes SARS-CoV-2 Tax:2697049
208 13941-13945 Gene denotes RdRp Gene:43740578
209 13951-13955 Gene denotes RdRp Gene:43740578
210 13972-13973 Gene denotes N Gene:43740575
211 13961-13962 Gene denotes E Gene:43740570
212 14040-14087 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
213 14089-14099 Species denotes SARS-CoV-2 Tax:2697049
219 14737-14742 Disease denotes cough MESH:D003371
220 14783-14794 Disease denotes sore throat MESH:D010608
221 14804-14809 Disease denotes fever MESH:D005334
222 15039-15044 Disease denotes fever MESH:D005334
223 15049-15058 Disease denotes diarrhoea MESH:D003967
228 15953-15957 Gene denotes Hu-1 Gene:6195
229 15512-15522 Species denotes SARS-CoV-2 Tax:2697049
230 15968-15978 Species denotes SARS-CoV-2 Tax:2697049
231 15930-15939 Disease denotes pneumonia MESH:D011014
239 16410-16413 Gene denotes Hu1 Gene:6195
240 16186-16196 Species denotes SARS-CoV-2 Tax:2697049
241 16487-16497 Species denotes SARS-CoV-2 Tax:2697049
242 16546-16561 Species denotes Betacoronavirus Tax:694002
243 16758-16768 Species denotes SARS-CoV-2 Tax:2697049
244 16846-16856 Species denotes SARS-CoV-2 Tax:2697049
245 16888-16898 Species denotes SARS-CoV-2 Tax:2697049
247 16999-17046 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
258 17786-17791 Gene denotes spike Gene:43740568
259 17547-17552 Gene denotes spike Gene:43740568
260 17279-17284 Gene denotes spike Gene:43740568
261 17187-17192 Gene denotes spike Gene:43740568
262 17223-17227 Gene denotes Hu-1 Gene:6195
263 17112-17122 Species denotes SARS-CoV-2 Tax:2697049
264 17590-17600 Species denotes SARS-CoV-2 Tax:2697049
265 17640-17650 Species denotes SARS-CoV-2 Tax:2697049
266 17686-17696 Species denotes SARS-CoV-2 Tax:2697049
267 17506-17514 Chemical denotes tyrosine MESH:D014443
271 18529-18534 Gene denotes IFN-γ Gene:3458
272 18746-18751 Gene denotes IFN-γ Gene:3458
273 17967-17977 Species denotes SARS-CoV-2 Tax:2697049
275 19117-19135 Gene denotes Interferon (IFN)-γ Gene:3458
277 18996-19001 Gene denotes spike Gene:43740568
279 19631-19636 Gene denotes IFN-γ Gene:3458
288 20143-20148 Gene denotes spike Gene:43740568
289 20079-20084 Gene denotes spike Gene:43740568
290 20017-20022 Gene denotes spike Gene:43740568
291 19786-19791 Gene denotes spike Gene:43740568
292 19814-19824 Species denotes SARS-CoV-2 Tax:2697049
293 20006-20016 Species denotes SARS-CoV-2 Tax:2697049
294 20068-20078 Species denotes SARS-CoV-2 Tax:2697049
295 20915-20923 Species denotes SARS-CoV Tax:694009
309 22669-22672 Gene denotes K77 Gene:374454
310 24083-24086 Gene denotes K77 Gene:374454
311 25581-25584 Gene denotes K77 Gene:374454
312 21673-21677 CellLine denotes S706 CVCL:5G71
313 21739-21744 CellLine denotes C1080 CVCL:0317
314 21781-21786 CellLine denotes H1086 CVCL:A471
315 22959-22963 CellLine denotes S706 CVCL:5G71
316 23032-23037 CellLine denotes C1080 CVCL:0317
317 23074-23079 CellLine denotes H1086 CVCL:A471
318 24401-24405 CellLine denotes A261 CVCL:2490
319 24495-24499 CellLine denotes S706 CVCL:5G71
320 24561-24566 CellLine denotes C1080 CVCL:0317
321 24603-24608 CellLine denotes H1086 CVCL:A471
324 21463-21468 Gene denotes spike Gene:43740568
325 21415-21462 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
329 26003-26008 Gene denotes spike Gene:43740568
330 25955-26002 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
331 26051-26098 Species denotes severe acute respiratory syndrome-coronavirus-2 Tax:2697049
335 26545-26550 Disease denotes CHAIN MESH:D007161
336 27129-27134 Disease denotes CHAIN MESH:D007161
337 27690-27695 Disease denotes CHAIN MESH:D007161
340 26446-26451 Gene denotes spike Gene:43740568
341 26398-26445 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
343 28303-28308 Gene denotes spike Gene:43740568
345 29571-29576 Gene denotes IFN-γ Gene:3458
407 29750-29768 Gene denotes Interferon (IFN)-γ Gene:3458
408 29890-29895 Gene denotes HLA-A Gene:3105
409 29913-29918 Gene denotes HLA-B Gene:3106
410 30022-30027 Gene denotes HLA-B Gene:3106
411 30034-30039 Gene denotes HLA-B Gene:3106
412 30046-30051 Gene denotes HLA-B Gene:3106
413 30067-30072 Gene denotes HLA-B Gene:3106
414 30079-30084 Gene denotes HLA-B Gene:3106
415 30091-30096 Gene denotes HLA-B Gene:3106
416 30103-30108 Gene denotes HLA-B Gene:3106
417 30222-30227 Gene denotes HLA-B Gene:3106
418 30234-30239 Gene denotes HLA-B Gene:3106
419 30246-30251 Gene denotes HLA-B Gene:3106
420 30258-30263 Gene denotes HLA-B Gene:3106
421 30270-30275 Gene denotes HLA-B Gene:3106
422 30282-30287 Gene denotes HLA-B Gene:3106
423 30292-30297 Gene denotes HLA-B Gene:3106
424 30390-30395 Gene denotes HLA-B Gene:3106
425 30402-30407 Gene denotes HLA-B Gene:3106
426 30414-30419 Gene denotes HLA-B Gene:3106
427 30426-30431 Gene denotes HLA-B Gene:3106
428 30567-30572 Gene denotes HLA-B Gene:3106
429 30579-30584 Gene denotes HLA-B Gene:3106
430 30591-30596 Gene denotes HLA-B Gene:3106
431 30603-30608 Gene denotes HLA-B Gene:3106
432 30615-30620 Gene denotes HLA-B Gene:3106
433 30627-30632 Gene denotes HLA-B Gene:3106
434 30639-30644 Gene denotes HLA-B Gene:3106
435 30817-30822 Gene denotes HLA-B Gene:3106
436 30829-30834 Gene denotes HLA-B Gene:3106
437 30911-30916 Gene denotes HLA-A Gene:3105
438 30931-30936 Gene denotes HLA-A Gene:3105
439 30963-30968 Gene denotes HLA-B Gene:3106
440 31090-31095 Gene denotes HLA-B Gene:3106
441 31102-31107 Gene denotes HLA-B Gene:3106
442 31114-31119 Gene denotes HLA-B Gene:3106
443 31126-31131 Gene denotes HLA-B Gene:3106
444 31138-31143 Gene denotes HLA-B Gene:3106
445 31150-31155 Gene denotes HLA-B Gene:3106
446 31162-31167 Gene denotes HLA-B Gene:3106
447 31242-31247 Gene denotes HLA-B Gene:3106
448 31254-31259 Gene denotes HLA-B Gene:3106
449 31266-31271 Gene denotes HLA-B Gene:3106
450 31278-31283 Gene denotes HLA-B Gene:3106
451 31290-31295 Gene denotes HLA-B Gene:3106
452 31302-31307 Gene denotes HLA-B Gene:3106
453 31314-31319 Gene denotes HLA-B Gene:3106
454 31326-31331 Gene denotes HLA-B Gene:3106
455 31338-31343 Gene denotes HLA-B Gene:3106
456 31348-31353 Gene denotes HLA-B Gene:3106
457 31369-31374 Gene denotes HLA-B Gene:3106
458 31230-31235 Gene denotes HLA-B Gene:3106
459 31048-31053 Gene denotes HLA-A Gene:3105
460 30797-30802 Gene denotes HLA-A Gene:3105
461 30785-30790 Gene denotes HLA-A Gene:3105
462 30537-30542 Gene denotes HLA-A Gene:3105
463 30525-30530 Gene denotes HLA-A Gene:3105
464 30000-30005 Gene denotes HLA-A Gene:3105
465 29870-29875 Gene denotes HLA-A Gene:3105
466 31036-31041 Gene denotes HLA-A Gene:3105
467 29988-29993 Gene denotes HLA-A Gene:3105
469 29610-29615 Gene denotes Spike Gene:43740568
471 31748-31758 Species denotes SARS-CoV-2 Tax:2697049
475 32560-32561 Gene denotes N Gene:43740575
476 32504-32512 Species denotes patients Tax:9606
477 32842-32850 Species denotes patients Tax:9606
480 32932-32942 Species denotes SARS-CoV-2 Tax:2697049
481 33530-33540 Species denotes SARS-CoV-2 Tax:2697049
497 33608-33612 Gene denotes nsp1 Gene:10045
498 34296-34300 Gene denotes ACE2 Gene:59272
499 34487-34491 Gene denotes ACE2 Gene:59272
500 34350-34355 Gene denotes spike Gene:43740568
501 34149-34154 Gene denotes spike Gene:43740568
502 33902-33907 Gene denotes spike Gene:43740568
503 33691-33694 Gene denotes Hu1 Gene:6195
504 33739-33744 Species denotes human Tax:9606
505 33745-33762 Species denotes Betacoronaviruses Tax:694002
506 33774-33783 Species denotes HCoV-HKU1 Tax:290028
507 34027-34044 Species denotes Betacoronaviruses Tax:694002
508 34072-34082 Species denotes SARS-CoV-2 Tax:2697049
509 34107-34117 Species denotes SARS-CoV-2 Tax:2697049
510 34377-34387 Species denotes SARS-CoV-2 Tax:2697049
511 33849-33865 Chemical denotes O-linked glycans
519 34597-34600 Gene denotes Hu1 Gene:6195
520 34537-34542 Gene denotes spike Gene:43740568
521 34564-34572 Species denotes SARS CoV Tax:694009
522 34579-34589 Species denotes SARS-CoV-2 Tax:2697049
523 34681-34691 Species denotes SARS-CoV-2 Tax:2697049
524 34751-34759 Species denotes SARS CoV Tax:694009
525 35069-35078 Disease denotes infection MESH:D007239
534 35620-35625 Gene denotes IFN-γ Gene:3458
535 35485-35490 Gene denotes spike Gene:43740568
536 35148-35153 Gene denotes spike Gene:43740568
537 35114-35122 Species denotes SARS-CoV Tax:694009
538 35788-35796 Species denotes SARS-CoV Tax:694009
539 36104-36112 Species denotes SARS-CoV Tax:694009
540 36397-36407 Species denotes SARS-CoV-2 Tax:2697049
541 36412-36420 Species denotes SARS-CoV Tax:694009
547 36579-36584 Gene denotes IFN-γ Gene:3458
548 36733-36738 Gene denotes IFN-γ Gene:3458
549 36916-36921 Gene denotes IFN-γ Gene:3458
550 36496-36501 Gene denotes spike Gene:43740568
551 36513-36521 Species denotes SARS-CoV Tax:694009
554 37676-37686 Species denotes SARS-CoV-2 Tax:2697049
555 37770-37778 Species denotes patients Tax:9606

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 5-11 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T2 485-491 Body_part denotes Throat http://purl.org/sig/ont/fma/fma228738
T3 572-576 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T4 619-623 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T5 792-796 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T6 982-993 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T7 995-1002 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T8 1038-1044 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T9 1337-1341 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T10 1407-1414 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T11 1508-1512 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T12 1541-1550 Body_part denotes leucocyte http://purl.org/sig/ont/fma/fma62852
T13 1843-1847 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T14 2245-2248 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T15 2249-2255 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T16 2369-2379 Body_part denotes intestinal http://purl.org/sig/ont/fma/fma7199
T17 3356-3359 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T18 3373-3379 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T19 3991-3997 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T20 4282-4289 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T21 4325-4329 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T22 4499-4511 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T23 5902-5908 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T24 6536-6541 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670
T25 6546-6552 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T26 7151-7154 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T27 7205-7208 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T28 7304-7307 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T29 7470-7474 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T30 7481-7485 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T31 7495-7499 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T32 7723-7729 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T33 7839-7842 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T34 7983-7986 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T35 8097-8100 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T36 8138-8141 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T37 8182-8185 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T38 8779-8785 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T39 9270-9280 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T40 9282-9284 Body_part denotes nt http://purl.org/sig/ont/fma/fma82740
T41 9382-9392 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T42 9408-9418 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T43 9420-9422 Body_part denotes aa http://purl.org/sig/ont/fma/fma82739
T44 9683-9690 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T45 9782-9794 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T46 9905-9912 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T47 9995-9999 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T48 10194-10198 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T49 10747-10754 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T50 11007-11014 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T51 11655-11666 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T52 12148-12155 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T53 12236-12244 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T54 12316-12348 Body_part denotes major histocompatibility complex http://purl.org/sig/ont/fma/fma84079
T55 12350-12353 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T56 12376-12399 Body_part denotes cytotoxic T lymphocytes http://purl.org/sig/ont/fma/fma70573
T57 12533-12547 Body_part denotes neural network http://purl.org/sig/ont/fma/fma74616
T58 12613-12617 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T59 12670-12679 Body_part denotes leucocyte http://purl.org/sig/ont/fma/fma62852
T60 12689-12692 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T61 12794-12801 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T62 13187-13191 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T63 13202-13206 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T64 13549-13553 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T65 13580-13584 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T66 13608-13612 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T67 13794-13799 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670
T68 13963-13967 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T69 13974-13978 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T70 13989-13995 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T71 14228-14234 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116
T72 14267-14273 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T73 14305-14309 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T74 14313-14317 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T75 14788-14794 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T76 15355-15359 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T77 15648-15654 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T78 15979-15985 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T79 16079-16085 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T80 16166-16172 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T81 16259-16261 Body_part denotes nt http://purl.org/sig/ont/fma/fma82740
T82 16266-16268 Body_part denotes aa http://purl.org/sig/ont/fma/fma82739
T83 16441-16443 Body_part denotes nt http://purl.org/sig/ont/fma/fma82740
T84 16463-16465 Body_part denotes aa http://purl.org/sig/ont/fma/fma82739
T85 16622-16624 Body_part denotes nt http://purl.org/sig/ont/fma/fma82740
T86 16685-16691 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T87 16988-16995 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T88 17193-17200 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T89 17285-17292 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T90 17477-17487 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T91 17506-17514 Body_part denotes tyrosine http://purl.org/sig/ont/fma/fma82768
T92 17553-17557 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T93 17792-17799 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T94 17912-17916 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T95 18028-18039 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T96 18965-18969 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T97 19002-19009 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T98 19792-19799 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T99 20023-20030 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T100 20085-20092 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T101 20149-20156 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T102 20846-20853 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T103 21335-21339 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T104 21469-21476 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T105 25883-25887 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T106 26009-26016 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T107 26311-26315 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T108 26452-26459 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T109 28243-28247 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T110 28309-28316 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T111 29305-29309 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T112 29398-29401 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T113 29616-29623 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T114 29655-29687 Body_part denotes major histocompatibility complex http://purl.org/sig/ont/fma/fma84079
T115 29689-29692 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T116 29804-29807 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T117 29870-29873 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T118 29882-29885 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T119 29886-29888 Body_part denotes A3 http://purl.org/sig/ont/fma/fma66599
T120 29890-29893 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T121 29902-29905 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T122 29913-29916 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T123 29980-29983 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T124 29984-29986 Body_part denotes A2 http://purl.org/sig/ont/fma/fma66595
T125 29988-29991 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T126 30000-30003 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T127 30012-30015 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T128 30022-30025 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T129 30034-30037 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T130 30046-30049 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T131 30058-30061 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T132 30067-30070 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T133 30079-30082 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T134 30091-30094 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T135 30103-30106 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T136 30113-30116 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T137 30122-30125 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T138 30131-30134 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T139 30214-30217 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T140 30218-30220 Body_part denotes A1 http://purl.org/sig/ont/fma/fma66592
T141 30222-30225 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T142 30234-30237 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T143 30246-30249 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T144 30258-30261 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T145 30270-30273 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T146 30282-30285 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T147 30292-30295 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T148 30304-30307 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T149 30313-30316 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T150 30381-30384 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T151 30390-30393 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T152 30402-30405 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T153 30414-30417 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T154 30426-30429 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T155 30436-30439 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T156 30525-30528 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T157 30537-30540 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T158 30549-30552 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T159 30558-30561 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T160 30567-30570 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T161 30579-30582 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T162 30591-30594 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T163 30603-30606 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T164 30615-30618 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T165 30627-30630 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T166 30639-30642 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T167 30649-30652 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T168 30658-30661 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T169 30667-30670 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T170 30675-30678 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T171 30683-30686 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T172 30696-30699 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T173 30785-30788 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T174 30797-30800 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T175 30809-30812 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T176 30813-30815 Body_part denotes A3 http://purl.org/sig/ont/fma/fma66599
T177 30817-30820 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T178 30829-30832 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T179 30839-30842 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T180 30903-30906 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T181 30907-30909 Body_part denotes A1 http://purl.org/sig/ont/fma/fma66592
T182 30911-30914 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T183 30923-30926 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T184 30927-30929 Body_part denotes A3 http://purl.org/sig/ont/fma/fma66599
T185 30931-30934 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T186 30943-30946 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T187 30954-30957 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T188 30963-30966 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T189 31028-31031 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T190 31032-31034 Body_part denotes A2 http://purl.org/sig/ont/fma/fma66595
T191 31036-31039 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T192 31048-31051 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T193 31060-31063 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T194 31071-31074 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T195 31081-31084 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T196 31090-31093 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T197 31102-31105 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T198 31114-31117 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T199 31126-31129 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T200 31138-31141 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T201 31150-31153 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T202 31162-31165 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T203 31230-31233 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T204 31242-31245 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T205 31254-31257 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T206 31266-31269 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T207 31278-31281 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T208 31290-31293 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T209 31302-31305 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T210 31314-31317 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T211 31326-31329 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T212 31338-31341 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T213 31348-31351 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T214 31360-31363 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T215 31369-31372 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T216 31381-31384 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T217 31394-31397 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T218 32007-32013 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T219 32410-32416 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T220 32470-32476 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T221 32478-32483 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T222 32488-32493 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T223 32562-32566 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T224 32637-32643 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T225 32809-32815 Body_part denotes saliva http://purl.org/sig/ont/fma/fma59862
T226 32863-32869 Body_part denotes saliva http://purl.org/sig/ont/fma/fma59862
T227 32903-32906 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T228 32991-32993 Body_part denotes nt http://purl.org/sig/ont/fma/fma82740
T229 33564-33574 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T230 33908-33915 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T231 34155-34162 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T232 34356-34363 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T233 34543-34550 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T234 34647-34657 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T235 35013-35019 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T236 35134-35142 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T237 35154-35161 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T238 35264-35268 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T239 35409-35413 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T240 35491-35498 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T241 35801-35808 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T242 36168-36172 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T243 36273-36277 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T244 36502-36509 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T245 36596-36600 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T246 36770-36777 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T247 36814-36818 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T248 36837-36844 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T249 37046-37050 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T250 37243-37246 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T251 37292-37295 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T252 38491-38498 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T253 38672-38676 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T254 38705-38712 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T255 39201-39208 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T256 39293-39300 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 485-491 Body_part denotes Throat http://purl.obolibrary.org/obo/UBERON_0000341
T2 6536-6541 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178
T3 6546-6552 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T4 13794-13799 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178
T5 14788-14794 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T6 15355-15359 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T7 32470-32476 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T8 32478-32483 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T9 32488-32493 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T10 32637-32643 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T11 32809-32815 Body_part denotes saliva http://purl.obolibrary.org/obo/UBERON_0001836
T12 32863-32869 Body_part denotes saliva http://purl.obolibrary.org/obo/UBERON_0001836

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 39-47 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T2 39-43 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T3 125-172 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T4 125-158 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T5 174-182 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 174-178 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T7 267-275 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 267-271 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 392-400 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 392-396 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T11 817-825 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 817-821 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T13 946-954 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 946-950 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T15 1095-1103 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 1095-1099 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 1184-1193 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T18 1674-1682 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T19 1674-1678 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T20 2148-2156 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T21 2148-2152 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T22 2346-2356 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T23 2430-2463 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T24 2465-2469 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T25 2858-2866 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T26 2858-2862 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T27 2882-2890 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T28 2882-2886 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T29 2961-2970 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T30 3630-3634 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T31 3764-3772 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 3764-3768 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T33 3816-3824 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T34 3816-3820 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T35 3890-3898 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T36 3890-3894 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T37 4093-4101 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T38 4093-4097 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T39 4432-4436 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T40 4482-4490 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T41 4482-4486 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T42 4602-4610 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T43 4602-4606 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T44 4734-4742 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T45 4734-4738 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T46 4822-4830 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T47 4822-4826 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T48 5671-5679 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T49 5671-5675 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T50 5819-5827 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T51 5819-5823 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T52 6097-6105 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T53 6097-6101 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T54 6188-6196 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T55 6188-6192 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T56 6478-6486 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T57 6478-6482 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T58 6503-6511 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T59 6503-6507 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T60 6559-6561 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T62 6655-6663 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T63 6655-6659 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T64 6666-6675 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T65 6750-6752 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T67 7095-7103 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T68 7095-7099 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T69 7178-7180 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T71 7357-7365 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T72 7357-7361 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T73 7751-7759 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T74 7751-7755 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T75 7861-7863 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T77 7924-7932 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 7924-7928 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T79 8625-8628 Disease denotes CLC http://purl.obolibrary.org/obo/MONDO_0004315
T80 8662-8665 Disease denotes CLC http://purl.obolibrary.org/obo/MONDO_0004315
T81 8755-8763 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T82 8755-8759 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T83 8799-8807 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T84 8799-8803 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T85 9515-9523 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T86 9515-9519 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T87 9602-9610 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T88 9602-9606 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T89 9761-9769 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T90 9761-9765 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T91 10222-10230 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T92 10222-10226 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T93 10730-10738 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T94 10730-10734 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T95 13368-13376 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T96 13368-13372 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T97 13418-13420 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T99 13433-13435 Disease denotes NS http://purl.obolibrary.org/obo/MONDO_0009735
T100 13497-13505 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T101 13497-13501 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T102 13646-13648 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T104 13649-13651 Disease denotes NS http://purl.obolibrary.org/obo/MONDO_0009735
T105 13842-13850 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T106 13842-13846 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T107 14040-14087 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T108 14040-14073 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T109 14089-14097 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T110 14089-14093 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T111 14187-14195 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T112 14187-14191 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T113 14783-14794 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T114 15049-15058 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T115 15092-15094 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T117 15260-15262 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T119 15349-15359 Disease denotes runny nose http://purl.obolibrary.org/obo/MONDO_0003014
T120 15456-15458 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T122 15512-15520 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T123 15512-15516 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T124 15612-15614 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T126 15930-15939 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T127 15968-15976 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T128 15968-15972 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T129 16186-16194 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T130 16186-16190 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T131 16487-16495 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T132 16487-16491 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T133 16758-16766 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T134 16758-16762 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T135 16846-16854 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T136 16846-16850 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T137 16888-16896 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T138 16888-16892 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T139 16999-17046 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T140 16999-17032 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T141 17112-17120 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T142 17112-17116 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T143 17590-17598 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T144 17590-17594 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T145 17640-17648 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T146 17640-17644 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T147 17686-17694 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T148 17686-17690 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T149 17967-17975 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T150 17967-17971 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T151 19024-19071 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T152 19024-19057 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T153 19814-19822 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T154 19814-19818 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T155 20006-20014 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T156 20006-20010 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T157 20068-20076 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T158 20068-20072 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T159 20915-20923 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T160 20915-20919 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T161 21415-21462 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T162 21415-21448 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T163 25955-26002 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T164 25955-25988 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T165 26051-26098 Disease denotes severe acute respiratory syndrome-coronavirus-2 http://purl.obolibrary.org/obo/MONDO_0100096
T166 26051-26084 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T167 26398-26445 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T168 26398-26431 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T169 31748-31756 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T170 31748-31752 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T171 32274-32276 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T173 32630-32632 Disease denotes TS http://purl.obolibrary.org/obo/MONDO_0010979|http://purl.obolibrary.org/obo/MONDO_0016455
T175 32932-32940 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T176 32932-32936 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T177 33530-33538 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T178 33530-33534 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T179 34072-34080 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T180 34072-34076 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T181 34107-34115 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T182 34107-34111 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T183 34377-34385 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T184 34377-34381 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T185 34564-34568 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T186 34579-34587 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T187 34579-34583 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T188 34681-34689 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T189 34681-34685 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T190 34751-34755 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T191 35069-35078 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T192 35114-35122 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T193 35114-35118 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T194 35788-35796 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T195 35788-35792 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T196 36104-36112 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T197 36104-36108 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T198 36397-36405 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T199 36397-36401 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T200 36412-36420 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T201 36412-36416 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T202 36513-36521 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T203 36513-36517 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T204 37676-37684 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T205 37676-37680 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T206 38513-38560 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T207 38513-38546 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T208 38727-38760 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T209 38774-38782 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T210 38774-38778 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T211 38820-38828 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T212 38820-38824 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T213 39047-39094 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T214 39047-39080 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T215 39103-39136 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T216 39138-39146 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T217 39138-39142 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T218 39154-39162 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T219 39154-39158 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T220 39215-39218 Disease denotes CLC http://purl.obolibrary.org/obo/MONDO_0004315
T221 39318-39326 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T222 39318-39322 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T223 39343-39351 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T224 39343-39347 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T225 39728-39731 Disease denotes Drs http://purl.obolibrary.org/obo/MONDO_0024265
T226 39955-39964 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T227 40003-40006 Disease denotes Drs http://purl.obolibrary.org/obo/MONDO_0024265
T228 40427-40430 Disease denotes Drs http://purl.obolibrary.org/obo/MONDO_0024265
T229 40812-40815 Disease denotes DHS http://purl.obolibrary.org/obo/MONDO_0008689|http://purl.obolibrary.org/obo/MONDO_0010575|http://purl.obolibrary.org/obo/MONDO_0044876

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 50-57 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T2 92-102 http://purl.obolibrary.org/obo/BFO_0000030 denotes objectives
T3 186-189 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T4 348-357 http://purl.obolibrary.org/obo/BFO_0000030 denotes objective
T5 522-523 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 572-576 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T7 619-623 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T8 783-784 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T9 790-796 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T10 882-883 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1025-1026 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 1194-1199 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T13 1335-1341 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T14 1388-1390 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T15 1420-1421 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 1506-1512 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T17 1535-1540 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T18 1541-1550 http://purl.obolibrary.org/obo/CL_0000738 denotes leucocyte
T19 1578-1579 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T20 1584-1585 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T21 1834-1835 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T22 1841-1847 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T23 2198-2205 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T24 2211-2212 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 2284-2286 http://purl.obolibrary.org/obo/CLO_0007074 denotes kb
T26 2284-2286 http://purl.obolibrary.org/obo/CLO_0051988 denotes kb
T27 2303-2308 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T28 2329-2334 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T29 2339-2345 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T30 2369-2379 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal
T31 2369-2379 http://www.ebi.ac.uk/efo/EFO_0000834 denotes intestinal
T32 2601-2602 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 2619-2624 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T34 2636-2641 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T35 2777-2782 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T36 3123-3128 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T37 3200-3205 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T38 3265-3266 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 3300-3305 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T40 3360-3365 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T41 3371-3372 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 3618-3621 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T43 3653-3656 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T44 3672-3675 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T45 3714-3720 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T46 3736-3741 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T47 3825-3827 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T48 4003-4006 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T49 4022-4025 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T50 4325-4329 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T51 4388-4391 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T52 4567-4572 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T53 4576-4581 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T54 4751-4752 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 4780-4782 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T56 5232-5233 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T57 5282-5285 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T58 6536-6541 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T59 6536-6541 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T60 7051-7052 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 7333-7340 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T62 7470-7474 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T63 7481-7485 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T64 7495-7499 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T65 7575-7580 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T66 7623-7627 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T67 7737-7742 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T68 8130-8131 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 8625-8628 http://purl.obolibrary.org/obo/CLO_0002494 denotes CLC
T70 8662-8665 http://purl.obolibrary.org/obo/CLO_0002494 denotes CLC
T71 9167-9168 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T72 9373-9376 http://purl.obolibrary.org/obo/CLO_0008190 denotes Per
T73 9420-9422 http://purl.obolibrary.org/obo/CLO_0001627 denotes aa
T74 9526-9533 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T75 9993-9999 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T76 10192-10198 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T77 10329-10336 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T78 10496-10503 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T79 10632-10633 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 11287-11288 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 11406-11407 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 11497-11498 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 11518-11519 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 11699-11700 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T85 11813-11814 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T86 12611-12617 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T87 12664-12669 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T88 12670-12679 http://purl.obolibrary.org/obo/CL_0000738 denotes leucocyte
T89 12723-12728 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T90 12803-12806 http://purl.obolibrary.org/obo/PR_000002979 denotes TAP
T91 13185-13191 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T92 13200-13206 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T93 13225-13241 http://purl.obolibrary.org/obo/PR_000000017 denotes interferon-gamma
T94 13473-13479 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T95 13549-13553 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T96 13580-13584 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T97 13608-13612 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T98 13740-13745 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T99 13794-13799 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T100 13794-13799 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T101 13963-13967 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T102 13974-13978 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T103 14258-14261 http://purl.obolibrary.org/obo/CLO_0008190 denotes Per
T104 14305-14309 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T105 14313-14317 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T106 14781-14782 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T107 15201-15202 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T108 15347-15348 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T109 15355-15359 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T110 15940-15945 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T111 16266-16268 http://purl.obolibrary.org/obo/CLO_0001627 denotes aa
T112 16463-16465 http://purl.obolibrary.org/obo/CLO_0001627 denotes aa
T113 16899-16906 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T114 17047-17054 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T115 17063-17070 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T116 17176-17179 http://purl.obolibrary.org/obo/CLO_0037067 denotes Val
T117 17469-17470 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T118 17553-17557 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T119 17807-17815 http://purl.obolibrary.org/obo/UBERON_0007651 denotes junction
T120 17819-17821 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T121 17826-17828 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T122 17826-17828 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T123 17910-17916 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T124 18013-18014 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 18628-18630 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T126 18653-18655 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T127 18653-18655 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T128 18865-18866 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T129 18963-18969 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T130 19072-19079 http://purl.obolibrary.org/obo/PR_000018263 denotes Peptide
T131 19146-19149 http://purl.obolibrary.org/obo/CLO_0001178 denotes 243
T132 19146-19149 http://purl.obolibrary.org/obo/CLO_0052433 denotes 243
T133 19499-19500 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 21333-21339 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T135 21390-21391 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T136 21393-21394 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T137 21582-21583 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T138 21774-21779 http://purl.obolibrary.org/obo/CLO_0001552 denotes A1085
T139 22381-22385 http://purl.obolibrary.org/obo/CLO_0053731 denotes S467
T140 22629-22632 http://purl.obolibrary.org/obo/CLO_0003609 denotes H69
T141 22942-22943 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T142 22947-22951 http://purl.obolibrary.org/obo/CLO_0001609 denotes A704
T143 23067-23072 http://purl.obolibrary.org/obo/CLO_0001552 denotes A1085
T144 23556-23560 http://purl.obolibrary.org/obo/CLO_0003435 denotes G402
T145 23790-23794 http://purl.obolibrary.org/obo/CLO_0053731 denotes S467
T146 24043-24046 http://purl.obolibrary.org/obo/CLO_0003609 denotes H69
T147 24131-24135 http://purl.obolibrary.org/obo/CLO_0001555 denotes A123
T148 24596-24601 http://purl.obolibrary.org/obo/CLO_0001552 denotes A1085
T149 25293-25297 http://purl.obolibrary.org/obo/CLO_0053731 denotes S467
T150 25541-25544 http://purl.obolibrary.org/obo/CLO_0003609 denotes H69
T151 25881-25887 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T152 26242-26243 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T153 26255-26256 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T154 26309-26315 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T155 26378-26379 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T156 26381-26382 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T157 26551-26552 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T158 27135-27136 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T159 28241-28247 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T160 28362-28363 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T161 28387-28388 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T162 28424-28425 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T163 28444-28445 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T164 28522-28528 http://purl.obolibrary.org/obo/CLO_0001054 denotes 1 244
T165 28594-28597 http://purl.obolibrary.org/obo/CLO_0001375 denotes 455
T166 28605-28608 http://purl.obolibrary.org/obo/CLO_0001379 denotes 465
T167 28807-28808 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T168 29236-29240 http://purl.obolibrary.org/obo/CLO_0001609 denotes A704
T169 29303-29309 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T170 29514-29515 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T171 29624-29632 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T172 29732-29739 http://purl.obolibrary.org/obo/PR_000018263 denotes Peptide
T173 29874-29875 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T174 29886-29888 http://purl.obolibrary.org/obo/CLO_0001577 denotes A3
T175 29894-29895 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T176 29917-29918 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T177 29984-29986 http://purl.obolibrary.org/obo/CLO_0001562 denotes A2
T178 29992-29993 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T179 30004-30005 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T180 30026-30027 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T181 30038-30039 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T182 30050-30051 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T183 30071-30072 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T184 30083-30084 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T185 30095-30096 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T186 30107-30108 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T187 30147-30149 http://purl.obolibrary.org/obo/CLO_0007074 denotes Kb
T188 30147-30149 http://purl.obolibrary.org/obo/CLO_0051988 denotes Kb
T189 30226-30227 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T190 30238-30239 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T191 30250-30251 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T192 30262-30263 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T193 30274-30275 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T194 30286-30287 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T195 30296-30297 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T196 30308-30311 http://purl.obolibrary.org/obo/CLO_0001822 denotes B62
T197 30339-30342 http://purl.obolibrary.org/obo/CLO_0001311 denotes 356
T198 30385-30388 http://purl.obolibrary.org/obo/CLO_0001568 denotes A24
T199 30394-30395 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T200 30406-30407 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T201 30418-30419 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T202 30430-30431 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T203 30452-30454 http://purl.obolibrary.org/obo/CLO_0002709 denotes Db
T204 30483-30486 http://purl.obolibrary.org/obo/CLO_0001405 denotes 511
T205 30529-30530 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T206 30541-30542 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T207 30553-30556 http://purl.obolibrary.org/obo/CLO_0001568 denotes A24
T208 30571-30572 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T209 30583-30584 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T210 30595-30596 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T211 30607-30608 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T212 30619-30620 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T213 30631-30632 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T214 30643-30644 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T215 30662-30665 http://purl.obolibrary.org/obo/CLO_0001822 denotes B62
T216 30671-30673 http://purl.obolibrary.org/obo/PR_000001438 denotes B7
T217 30719-30721 http://purl.obolibrary.org/obo/CLO_0007074 denotes Kb
T218 30719-30721 http://purl.obolibrary.org/obo/CLO_0051988 denotes Kb
T219 30789-30790 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T220 30801-30802 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T221 30813-30815 http://purl.obolibrary.org/obo/CLO_0001577 denotes A3
T222 30821-30822 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T223 30833-30834 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T224 30843-30846 http://purl.obolibrary.org/obo/CLO_0001822 denotes B62
T225 30915-30916 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T226 30927-30929 http://purl.obolibrary.org/obo/CLO_0001577 denotes A3
T227 30935-30936 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T228 30958-30961 http://purl.obolibrary.org/obo/CLO_0001564 denotes A20
T229 30958-30961 http://purl.obolibrary.org/obo/CLO_0050194 denotes A20
T230 30967-30968 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T231 31032-31034 http://purl.obolibrary.org/obo/CLO_0001562 denotes A2
T232 31040-31041 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T233 31052-31053 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T234 31094-31095 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T235 31106-31107 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T236 31118-31119 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T237 31130-31131 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T238 31142-31143 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T239 31154-31155 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T240 31166-31167 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T241 31234-31235 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T242 31246-31247 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T243 31258-31259 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T244 31270-31271 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T245 31282-31283 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T246 31294-31295 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T247 31306-31307 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T248 31318-31319 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T249 31330-31331 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T250 31342-31343 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T251 31352-31353 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T252 31364-31367 http://purl.obolibrary.org/obo/CLO_0001822 denotes B62
T253 31373-31374 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T254 31491-31499 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T255 31568-31576 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T256 31809-31815 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T257 31859-31860 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T258 32397-32398 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T259 32562-32566 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T260 32783-32788 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T261 32829-32831 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T262 32870-32877 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T263 33119-33120 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T264 33140-33142 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T265 33362-33364 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T266 33739-33744 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T267 33793-33794 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T268 33802-33803 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T269 33875-33877 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T270 33878-33880 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T271 33878-33880 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T272 33973-33976 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T273 34025-34026 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T274 34052-34053 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T275 34253-34255 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T276 34253-34255 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T277 34430-34432 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T278 34437-34439 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T279 34437-34439 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T280 35162-35165 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T281 35262-35268 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T282 35342-35344 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T283 35367-35369 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T284 35367-35369 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T285 35407-35413 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T286 35607-35608 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T287 35689-35690 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T288 35812-35813 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T289 35895-35898 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T290 36049-36050 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T291 36081-36084 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T292 36166-36172 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T293 36269-36270 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T294 36271-36277 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T295 36433-36436 http://purl.obolibrary.org/obo/CLO_0001178 denotes 243
T296 36433-36436 http://purl.obolibrary.org/obo/CLO_0052433 denotes 243
T297 36522-36525 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T298 36594-36600 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T299 36779-36780 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T300 36812-36818 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T301 36854-36855 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T302 37044-37050 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cell
T303 37131-37133 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T304 37174-37176 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T305 37174-37176 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T306 37235-37236 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T307 37266-37267 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T308 37272-37273 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T309 37735-37738 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T310 37827-37832 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T311 38095-38100 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T312 38251-38254 http://purl.obolibrary.org/obo/CLO_0002941 denotes EPI
T313 38270-38273 http://purl.obolibrary.org/obo/CLO_0002941 denotes EPI
T314 38606-38607 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T315 38620-38621 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T316 38670-38676 http://purl.obolibrary.org/obo/CL_0000236 denotes B-cell
T317 38979-38980 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T318 38992-38993 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T319 39215-39218 http://purl.obolibrary.org/obo/CLO_0002494 denotes CLC
T320 39355-39357 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T321 39408-39410 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T322 39408-39410 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T323 39728-39731 http://purl.obolibrary.org/obo/CLO_0002819 denotes Drs
T324 40003-40006 http://purl.obolibrary.org/obo/CLO_0002819 denotes Drs
T325 40030-40032 http://purl.obolibrary.org/obo/CLO_0007874 denotes Ms
T326 40062-40063 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T327 40083-40085 http://purl.obolibrary.org/obo/CLO_0007874 denotes Ms
T328 40086-40087 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T329 40102-40103 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T330 40118-40120 http://purl.obolibrary.org/obo/CLO_0007874 denotes Ms
T331 40135-40137 http://purl.obolibrary.org/obo/CLO_0007874 denotes Ms
T332 40167-40169 http://purl.obolibrary.org/obo/CLO_0007874 denotes Ms
T333 40183-40187 http://purl.obolibrary.org/obo/CLO_0002819 denotes Dr S
T334 40196-40198 http://purl.obolibrary.org/obo/CLO_0007874 denotes Ms
T335 40213-40214 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T336 40386-40388 http://purl.obolibrary.org/obo/CLO_0007874 denotes Ms
T337 40427-40430 http://purl.obolibrary.org/obo/CLO_0002819 denotes Drs
T338 40471-40472 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T339 40580-40582 http://purl.obolibrary.org/obo/CLO_0007874 denotes Ms

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 982-993 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T2 1407-1414 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T3 1437-1444 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T4 1551-1558 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T5 3657-3659 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T6 3676-3678 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T7 4007-4009 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T8 4026-4028 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T9 4077-4082 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T10 4282-4289 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T11 4349-4360 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T12 4499-4511 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T13 5924-5931 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T14 6559-6561 Chemical denotes TS http://purl.obolibrary.org/obo/CHEBI_73664
T15 6750-6752 Chemical denotes TS http://purl.obolibrary.org/obo/CHEBI_73664
T16 7178-7180 Chemical denotes TS http://purl.obolibrary.org/obo/CHEBI_73664
T17 7861-7863 Chemical denotes TS http://purl.obolibrary.org/obo/CHEBI_73664
T18 9041-9045 Chemical denotes MEGA http://purl.obolibrary.org/obo/CHEBI_6617
T19 9270-9280 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T20 9282-9284 Chemical denotes nt http://purl.obolibrary.org/obo/CHEBI_36976
T21 9356-9360 Chemical denotes MEGA http://purl.obolibrary.org/obo/CHEBI_6617
T22 9382-9392 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T23 9408-9418 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T24 9408-9413 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T25 9414-9418 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T26 9420-9422 Chemical denotes aa http://purl.obolibrary.org/obo/CHEBI_33709
T27 9683-9690 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T28 9695-9702 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T29 9782-9794 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T30 9905-9912 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T31 10247-10254 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T32 10329-10336 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T33 10496-10503 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T34 10747-10754 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T35 10990-10992 Chemical denotes PI http://purl.obolibrary.org/obo/CHEBI_28874|http://purl.obolibrary.org/obo/CHEBI_53806|http://purl.obolibrary.org/obo/CHEBI_61484|http://purl.obolibrary.org/obo/CHEBI_74790
T39 11007-11014 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T40 11108-11110 Chemical denotes PI http://purl.obolibrary.org/obo/CHEBI_28874|http://purl.obolibrary.org/obo/CHEBI_53806|http://purl.obolibrary.org/obo/CHEBI_61484|http://purl.obolibrary.org/obo/CHEBI_74790
T44 11359-11366 Chemical denotes solvent http://purl.obolibrary.org/obo/CHEBI_46787
T45 11386-11388 Chemical denotes PI http://purl.obolibrary.org/obo/CHEBI_28874|http://purl.obolibrary.org/obo/CHEBI_53806|http://purl.obolibrary.org/obo/CHEBI_61484|http://purl.obolibrary.org/obo/CHEBI_74790
T49 11655-11666 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T50 11655-11660 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T51 11661-11666 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T52 11751-11758 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T53 11869-11876 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T54 12148-12155 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T55 12236-12244 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T56 12363-12372 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T57 12680-12687 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T58 12794-12801 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T59 13225-13235 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999
T60 13236-13241 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T61 13418-13420 Chemical denotes TS http://purl.obolibrary.org/obo/CHEBI_73664
T62 13433-13435 Chemical denotes NS http://purl.obolibrary.org/obo/CHEBI_73426
T63 13646-13648 Chemical denotes TS http://purl.obolibrary.org/obo/CHEBI_73664
T64 13649-13651 Chemical denotes NS http://purl.obolibrary.org/obo/CHEBI_73426
T65 15092-15094 Chemical denotes TS http://purl.obolibrary.org/obo/CHEBI_73664
T66 15260-15262 Chemical denotes TS http://purl.obolibrary.org/obo/CHEBI_73664
T67 15456-15458 Chemical denotes TS http://purl.obolibrary.org/obo/CHEBI_73664
T68 15612-15614 Chemical denotes TS http://purl.obolibrary.org/obo/CHEBI_73664
T69 16259-16261 Chemical denotes nt http://purl.obolibrary.org/obo/CHEBI_36976
T70 16266-16268 Chemical denotes aa http://purl.obolibrary.org/obo/CHEBI_33709
T71 16441-16443 Chemical denotes nt http://purl.obolibrary.org/obo/CHEBI_36976
T72 16463-16465 Chemical denotes aa http://purl.obolibrary.org/obo/CHEBI_33709
T73 16622-16624 Chemical denotes nt http://purl.obolibrary.org/obo/CHEBI_36976
T74 17084-17091 Chemical denotes magenta http://purl.obolibrary.org/obo/CHEBI_87661
T75 17156-17159 Chemical denotes Arg http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_29952
T77 17160-17163 Chemical denotes Ile http://purl.obolibrary.org/obo/CHEBI_17191|http://purl.obolibrary.org/obo/CHEBI_30009
T79 17172-17175 Chemical denotes Ala http://purl.obolibrary.org/obo/CHEBI_16977|http://purl.obolibrary.org/obo/CHEBI_46217
T81 17176-17179 Chemical denotes Val http://purl.obolibrary.org/obo/CHEBI_16414|http://purl.obolibrary.org/obo/CHEBI_30015
T83 17193-17200 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T84 17285-17292 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T85 17477-17487 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T86 17506-17522 Chemical denotes tyrosine residue http://purl.obolibrary.org/obo/CHEBI_32789
T87 17506-17514 Chemical denotes tyrosine http://purl.obolibrary.org/obo/CHEBI_18186
T88 17792-17799 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T89 17826-17828 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T90 18028-18039 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T91 18028-18033 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T92 18034-18039 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T93 18653-18655 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T94 18768-18770 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T95 18921-18928 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T96 18952-18954 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T97 19002-19009 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T98 19072-19079 Chemical denotes Peptide http://purl.obolibrary.org/obo/CHEBI_16670
T99 19792-19799 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T100 20023-20030 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T101 20085-20092 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T102 20149-20156 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T103 20397-20399 Chemical denotes PI http://purl.obolibrary.org/obo/CHEBI_28874|http://purl.obolibrary.org/obo/CHEBI_53806|http://purl.obolibrary.org/obo/CHEBI_61484|http://purl.obolibrary.org/obo/CHEBI_74790
T107 20438-20440 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T108 20846-20853 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T109 21040-21042 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T110 21314-21316 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T111 21469-21476 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T112 26009-26016 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T113 26236-26238 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T114 26452-26459 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T115 28222-28224 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T116 28309-28316 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T117 28455-28462 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T118 28820-28827 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T119 29310-29317 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T120 29616-29623 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T121 29624-29632 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T122 29732-29739 Chemical denotes Peptide http://purl.obolibrary.org/obo/CHEBI_16670
T123 30144-30146 Chemical denotes H2 http://purl.obolibrary.org/obo/CHEBI_18276
T124 30151-30153 Chemical denotes H2 http://purl.obolibrary.org/obo/CHEBI_18276
T125 30449-30451 Chemical denotes H2 http://purl.obolibrary.org/obo/CHEBI_18276
T126 30452-30454 Chemical denotes Db http://purl.obolibrary.org/obo/CHEBI_33349
T127 30456-30458 Chemical denotes H2 http://purl.obolibrary.org/obo/CHEBI_18276
T128 30463-30465 Chemical denotes H2 http://purl.obolibrary.org/obo/CHEBI_18276
T129 30709-30711 Chemical denotes H2 http://purl.obolibrary.org/obo/CHEBI_18276
T130 30716-30718 Chemical denotes H2 http://purl.obolibrary.org/obo/CHEBI_18276
T131 30723-30725 Chemical denotes H2 http://purl.obolibrary.org/obo/CHEBI_18276
T132 31406-31408 Chemical denotes H2 http://purl.obolibrary.org/obo/CHEBI_18276
T133 31491-31499 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T134 31568-31576 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T135 32274-32276 Chemical denotes TS http://purl.obolibrary.org/obo/CHEBI_73664
T136 32630-32632 Chemical denotes TS http://purl.obolibrary.org/obo/CHEBI_73664
T137 32991-32993 Chemical denotes nt http://purl.obolibrary.org/obo/CHEBI_36976
T138 33564-33574 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T139 33564-33569 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T140 33570-33574 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T141 33858-33865 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T142 33878-33880 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T143 33908-33915 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T144 34155-34162 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T145 34253-34255 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T146 34356-34363 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T147 34437-34439 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T148 34543-34550 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T149 34647-34657 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T150 35134-35142 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T151 35154-35161 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T152 35367-35369 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T153 35491-35498 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T154 35723-35730 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T155 35801-35808 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T156 35844-35851 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T157 35887-35894 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T158 36073-36080 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T159 36188-36195 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T160 36502-36509 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T161 36770-36777 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T162 36837-36844 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T163 37174-37176 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T164 38033-38043 Chemical denotes antivirals http://purl.obolibrary.org/obo/CHEBI_22587
T165 38491-38498 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T166 38705-38712 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T167 38870-38877 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T168 38889-38896 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T169 38909-38916 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T170 38927-38934 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T171 39201-39208 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T172 39293-39300 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T173 39408-39410 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 634-655 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T2 642-655 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T3 4299-4324 http://purl.obolibrary.org/obo/GO_0051701 denotes interaction with the host
T4 5547-5558 http://purl.obolibrary.org/obo/GO_0006810 denotes transported
T5 5749-5770 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T6 5757-5770 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T7 6770-6785 http://purl.obolibrary.org/obo/GO_0046794 denotes viral transport
T8 6776-6785 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T9 7487-7494 http://purl.obolibrary.org/obo/GO_0004526 denotes RNase P
T10 12110-12132 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T11 12119-12132 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T12 12316-12348 http://purl.obolibrary.org/obo/GO_0046776 denotes major histocompatibility complex
T13 12350-12353 http://purl.obolibrary.org/obo/GO_0046776 denotes MHC
T14 12494-12502 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T15 12773-12782 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T16 13873-13894 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T17 13881-13894 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T18 14319-14326 http://purl.obolibrary.org/obo/GO_0004526 denotes Rnase P
T19 18713-18728 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T20 18773-18795 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T21 18782-18795 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T22 18839-18852 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T23 29655-29687 http://purl.obolibrary.org/obo/GO_0046776 denotes major histocompatibility complex
T24 29689-29692 http://purl.obolibrary.org/obo/GO_0046776 denotes MHC
T25 29804-29807 http://purl.obolibrary.org/obo/GO_0046776 denotes MHC
T26 35912-35934 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T27 35921-35934 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 22644-22647 GlycoEpitope denotes G72 http://www.glycoepitope.jp/epitopes/AN0029
T2 24058-24061 GlycoEpitope denotes G72 http://www.glycoepitope.jp/epitopes/AN0029
T3 25556-25559 GlycoEpitope denotes G72 http://www.glycoepitope.jp/epitopes/AN0029
T4 28839-28842 GlycoEpitope denotes G72 http://www.glycoepitope.jp/epitopes/AN0029

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-68 Sentence denotes Full-genome sequences of the first two SARS-CoV-2 viruses from India
T2 70-78 Sentence denotes Abstract
T3 79-103 Sentence denotes Background & objectives:
T4 104-222 Sentence denotes Since December 2019, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has globally affected 195 countries.
T5 223-343 Sentence denotes In India, suspected cases were screened for SARS-CoV-2 as per the advisory of the Ministry of Health and Family Welfare.
T6 344-474 Sentence denotes The objective of this study was to characterize SARS-CoV-2 sequences from three identified positive cases as on February 29, 2020.
T7 476-484 Sentence denotes Methods:
T8 485-714 Sentence denotes Throat swab/nasal swab specimens for a total of 881 suspected cases were screened by E gene and confirmed by RdRp (1), RdRp (2) and N gene real-time reverse transcription-polymerase chain reactions and next-generation sequencing.
T9 715-854 Sentence denotes Phylogenetic analysis, molecular characterization and prediction of B- and T-cell epitopes for Indian SARS-CoV-2 sequences were undertaken.
T10 856-864 Sentence denotes Results:
T11 865-957 Sentence denotes Three cases with a travel history from Wuhan, China, were confirmed positive for SARS-CoV-2.
T12 958-1070 Sentence denotes Almost complete (29,851 nucleotides) genomes of case 1, case 3 and a fragmented genome for case 2 were obtained.
T13 1071-1230 Sentence denotes The sequences of Indian SARS-CoV-2 though not identical showed high (~99.98%) identity with Wuhan seafood market pneumonia virus (accession number: NC 045512).
T14 1231-1317 Sentence denotes Phylogenetic analysis showed that the Indian sequences belonged to different clusters.
T15 1318-1491 Sentence denotes Predicted linear B-cell epitopes were found to be concentrated in the S1 domain of spike protein, and a conformational epitope was identified in the receptor-binding domain.
T16 1492-1634 Sentence denotes The predicted T-cell epitopes showed broad human leucocyte antigen allele coverage of A and B supertypes predominant in the Indian population.
T17 1636-1665 Sentence denotes Interpretation & conclusions:
T18 1666-1770 Sentence denotes The two SARS-CoV-2 sequences obtained from India represent two different introductions into the country.
T19 1771-1818 Sentence denotes The genetic heterogeneity is as noted globally.
T20 1819-1954 Sentence denotes The identified B- and T-cell epitopes may be considered suitable for future experiments towards the design of vaccines and diagnostics.
T21 1955-2159 Sentence denotes Continuous monitoring and analysis of the sequences of new cases from India and the other affected countries would be vital to understand the genetic evolution and rates of substitution of the SARS-CoV-2.
T22 2161-2287 Sentence denotes The Coronaviridae family encompasses viruses with a single-stranded, positive-sense RNA genome of size approximately 26-32 kb.
T23 2288-2416 Sentence denotes Initially, the virus was associated with human and animal infections that caused intestinal as well as respiratory infections12.
T24 2417-2585 Sentence denotes In 2002, the severe acute respiratory syndrome (SARS) coronavirus (CoV) outbreak that claimed the lives of many people in China raised the alarm towards these viruses2.
T25 2586-2743 Sentence denotes Further, after a decade, another human pathogenic virus emerged, Middle East respiratory syndrome CoV (MERS-CoV) that affected the Middle Eastern countries2.
T26 2744-2907 Sentence denotes Current knowledge identifies six virus groups that can infect humans3 in the Coronaviridae family, which includes SARS-CoV (now termed as SARS-CoV-1) and MERS-CoV.
T27 2908-3027 Sentence denotes Recently in December 2019, China reported cases with pneumonia of unknown aetiology in the Hubei province, Wuhan city4.
T28 3028-3122 Sentence denotes Further analysis of these cases was carried out to identify the causative agent of pneumonia5.
T29 3123-3295 Sentence denotes Virus isolation and genomic characterization of the complete sequence of the virus through next-generation sequencing (NGS), identified it as a novel CoV, named 2019-nCoV3.
T30 3296-3398 Sentence denotes The virus characterization revealed that it is an enveloped RNA virus with a genome size of 29,903 bp.
T31 3399-3548 Sentence denotes The phylogenetic analysis of the sequence showed that it belonged to the Sarbecovirus subgenus of genus Betacoronavirus and the family Coronaviridae.
T32 3549-3785 Sentence denotes The sequence was closely related (~87.5% sequence similarity) to two bat-derived SARS-like CoV strains (bat-SL-CoVZC45 and bat-SL-CoVZXC21) that are known to infect humans, including the virus which led to the 2003 SARS-CoV-1 outbreak6.
T33 3786-3828 Sentence denotes The 2019-nCoV is now named as SARS-CoV-27.
T34 3829-3998 Sentence denotes Further, based on SimPlot analyses, it was demonstrated that SARS-CoV-2 was more closely related to the BatCoV RaTG13 sequence (~96.3% similarity) throughout the genome.
T35 3999-4234 Sentence denotes The bat-SL-CoVZC45 and bat-SL-CoVZXC21 strains clustered differently from the group formed by SARS-CoV-2 and BatCoV RaTG13 in the region spanning the 3′-end of open reading frame (ORF)1a, the ORF1b and almost half of the spike region8.
T36 4235-4444 Sentence denotes The receptor-binding domain (RBD) of the spike protein mediates interaction with the host cell receptor9, and the angiotensin-converting enzyme 2 (ACE2) has been identified as the receptor for the SARS-CoVs10.
T37 4445-4562 Sentence denotes Specific mutations in the RBD of the SARS-CoV-2 spike glycoprotein were found to have enhanced binding to the ACE211.
T38 4563-4668 Sentence denotes The human-to-human transmission of the SARS-CoV-2 created an alert with the increasing number of cases12.
T39 4669-4795 Sentence denotes The WHO report dated February 28, 2020 confirmed 83,652 cases of SARS-CoV-2, with a total of 2,858 deaths from 52 countries12.
T40 4796-4979 Sentence denotes After the first report of SARS-CoV-2 from Wuhan, China, the Government of India reviewed and initiated multisectoral measures for the mitigation of this emerging public health crisis.
T41 4980-5166 Sentence denotes These include point-of-entry surveillance at 21 international airports, enhanced State-level surveillance programmes and preparedness for handling clinical cases in designated hospitals.
T42 5167-5446 Sentence denotes Till date, the Integrated Disease Surveillance Programme (IDSP), a national health programme, Government of India, has collected samples from symptomatic travellers in liaison with the State-level Viral Research and Diagnostic Laboratories (VRDLs), Department of Health Research.
T43 5447-5505 Sentence denotes These VRDLs respond for timely diagnosis during outbreaks.
T44 5506-5682 Sentence denotes The suspected samples were collected and transported to the Indian Council of Medical Research-National Institute of Virology (ICMR-NIV), Pune, for the diagnosis of SARS-CoV-2.
T45 5683-5952 Sentence denotes The specimens of the positive cases were diagnosed with real-time reverse transcription-polymerase chain reaction (RT-PCR)-specific for SARS-CoV-2 using the protocol published by the WHO13 and characterized by complete genome sequencing and epitope prediction analyses.
T46 5953-6141 Sentence denotes These sequences were also compared with the available GenBank sequences to monitor the mutations and understand their relation with other known SARS-CoV-2 available in the public database.
T47 6142-6235 Sentence denotes Here, we report molecular characterization of SARS-CoV-2 sequences from three positive cases.
T48 6237-6255 Sentence denotes Material & Methods
T49 6256-6384 Sentence denotes The clinical samples were referred by the hospital authorities through the Kerala State Health Services for diagnostic purposes.
T50 6385-6489 Sentence denotes Further samples were received from different parts of India for establishing the presence of SARS-CoV-2.
T51 6490-6535 Sentence denotes Detection of SARS-CoV-2 in suspected samples:
T52 6536-6745 Sentence denotes Blood and throat swab (TS) specimens were collected from the suspected cases that complied with the case definition of SARS-CoV-2 infection as per the guidelines of the Ministry of Health and Family Welfare14.
T53 6746-6793 Sentence denotes The TS was collected in viral transport medium.
T54 6794-6957 Sentence denotes These samples were referred to the ICMR-NIV, Pune, India (which is the national reference laboratory for India, also referred as the government's apex laboratory).
T55 6958-7140 Sentence denotes As of February 29, 2020, 881 samples of suspected cases referred from different States, with a travel history to Wuhan, China, and other SARS-CoV-2-affected countries, were screened.
T56 7141-7289 Sentence denotes The viral RNA was extracted from the TS sample using the Magmax RNA extraction kit (Applied Biosystems, USA) as per the manufacturer's instructions.
T57 7290-7486 Sentence denotes The extracted RNA was immediately used for testing the presence of SARS-CoV-2 using the real-time RT-PCR protocol published by the WHO12 for the detection of RdRp (1), RdRp (2), E gene and N gene.
T58 7487-7550 Sentence denotes RNase P gene was used as the internal control for the analysis.
T59 7551-7640 Sentence denotes Confirmatory laboratory tests were performed as per the WHO-recommended test protocols13.
T60 7641-7743 Sentence denotes These samples were also sequenced using the NGS approach to retrieve the complete genome of the virus.
T61 7744-7828 Sentence denotes NGS of SARS-CoV-2 from India - Phylogenetic analysis and molecular characterization:
T62 7829-7969 Sentence denotes The total RNA of three positive TS specimens from Kerala, was extracted from 250-300 μl of the SARS-CoV-2 real-time RT-PCR positive samples.
T63 7970-8082 Sentence denotes QIAamp Viral RNA extraction kit (QIAGEN, Hilden, Germany) was used according to the manufacturer's instructions.
T64 8083-8181 Sentence denotes The extracted RNA was further quantified using a Qubit RNA High-Sensitivity kit (Invitrogen, USA).
T65 8182-8388 Sentence denotes RNA libraries were prepared as per the earlier-defined protocol and quantified using KAPA Library Quantification Kit (Kapa Biosystems, Roche Diagnostics Corporation, USA) as per the manufacturer's protocol.
T66 8389-8487 Sentence denotes Further, individual libraries were neutralized and loaded on the Miniseq platform (Illumina, USA).
T67 8488-8568 Sentence denotes The detailed protocols for the steps undertaken have been published earlier1516.
T68 8569-8684 Sentence denotes The data generated from the machine were analyzed using CLC genomics workbench version 11.0 (CLC, QIAGEN, Germany).
T69 8685-8766 Sentence denotes Reference-based mapping was performed to retrieve the sequence of the SARS-CoV-2.
T70 8767-8988 Sentence denotes Full-length genome sequences of SARS-CoV-2 were downloaded from the GISAID database17 (Supplementary Table I (available from http://www.ijmr.org.in/articles/2020/151/2/images/IndianJMedRes_2020_151_2_200_281471_sm5.pdf)).
T71 8989-9166 Sentence denotes Multiple sequence alignment was performed using the MEGA software version 7.018 with retrieved sequences from two of the three positive cases and the available GISAID sequences.
T72 9167-9372 Sentence denotes A phylogenetic tree was generated using the neighbour joining method and the Kimura-2-parameter as the nucleotide (nt) substitution model with 1000 bootstrap replications as implemented in MEGA software18.
T73 9373-9481 Sentence denotes Per cent nucleotide divergence and amino acid (aa) divergence were calculated using the p-distance method18.
T74 9482-9640 Sentence denotes Mutations specific to the Indian SARS-CoV-2 viruses were identified by comparing the coding regions with respect to the SARS-CoV-2, Wuhan, China (Wuhan hu-1).
T75 9641-9714 Sentence denotes Three-dimensional (3D) model of the spike protein and epitope prediction:
T76 9715-9972 Sentence denotes The pre-fusion structure of the Indian case 1 SARS-CoV-2 spike (S) glycoprotein was modelled using the Swiss-Model server (https://swissmodel.expasy.org/interactive) and the corresponding S protein of Wuhan-Hu-1 (6VSB.PDB) as the template (99.97% identity).
T77 9973-10093 Sentence denotes Sequential (linear) B-cell epitopes were predicted using BepiPred-2.0 server (http://www.cbs.dtu.dk/services/BepiPred/).
T78 10094-10242 Sentence denotes The ABCpred prediction tool (http://crdd.osdd.net/raghava/abcpred/) was also used to identify the B-cell epitopes in the Indian SARS-CoV-2 sequence.
T79 10243-10345 Sentence denotes The epitope prediction probability of >0.8 was set to increase the specificity of the peptide stretch.
T80 10346-10459 Sentence denotes The overlapping epitopes predicted by BepiPred-2.0 online server and the ABCpred prediction tool were identified.
T81 10460-10659 Sentence denotes The antigenicity of the shortlisted peptide sequences was further predicted using the Vaxijen online server (http://www.ddg-pharmfac.net/vaxijen/VaxiJen/VaxiJen.html) with a default threshold of 0.4.
T82 10660-10933 Sentence denotes Discontinuous epitopes on the modelled structure of the Indian case 1 SARS-CoV-2 spike protein were predicted using the online servers, Ellipro (http://tools.iedb.org/ellipro/) and DiscoTope 2.0 (http://tools.iedb.org/discotope/), integrated in the Immune Epitope Database.
T83 10934-11085 Sentence denotes Ellipro predicts epitopes based on the protusion index (PI), wherein the protein shape is approximated as an ellipsoid (Ref for Ellipro and DiscoTope).
T84 11086-11220 Sentence denotes An ellipsoid with the PI value of 0.8 indicates that 80 per cent of the residues are within the ellipsoid and 20 per cent are outside.
T85 11221-11302 Sentence denotes All residues that are outside the 80 per cent ellipsoid will have a score of 0.8.
T86 11303-11381 Sentence denotes Residues with larger scores are associated with greater solvent accessibility.
T87 11382-11421 Sentence denotes The PI value was set to a score of 0.8.
T88 11422-11566 Sentence denotes DiscoTope predicts epitopes using 3D structure and half-sphere exposure as a surface measure in a novel spatial neighbourhood definition method.
T89 11567-11698 Sentence denotes Default values were set for sensitivity (0.47) and specificity (0.75) for selecting the amino acids forming discontinuous epitopes.
T90 11699-11924 Sentence denotes A sensitivity of 0.47 means that 47 per cent of the epitope residues are predicted as part of the epitopes, while a specificity of 0.75 means that 25 per cent of the non-epitope residues are predicted as part of the epitopes.
T91 11925-12078 Sentence denotes Outputs from both the methods were combined, and the final regions were mapped on the modelled 3D-structure as the most probable conformational epitopes.
T92 12079-12225 Sentence denotes In addition, we also predicted N-linked glycosylation sites in the S protein using NetNGlyc 1.0 Server (http://www.cbs.dtu.dk/services/NetNGlyc/).
T93 12226-12407 Sentence denotes The spike proteins were also screened for the presence of potential epitopes presented by major histocompatibility complex (MHC) class I molecules to cytotoxic T lymphocytes (CTLs).
T94 12408-12627 Sentence denotes The online NetCTL1.2 server (http://www.cbs.dtu.dk/services/NetCTL/) based on machine learning techniques such as artificial neural network (ANN) and support vector machine (SVM) was used to predict the T-cell epitopes.
T95 12628-12737 Sentence denotes The prediction was made for all the human leucocyte antigen (HLA) supertypes and the available human alleles.
T96 12738-12873 Sentence denotes The C terminal cleavage, weight of transport-associated protein (TAP) efficiency and threshold for identification were kept as default.
T97 12874-13014 Sentence denotes VaxiJen v2.0 tool was used to predict the antigenicity of the predicted epitopes (http://www.ddg-pharmfac.net/vaxijen/VaxiJen/VaxiJen.html).
T98 13015-13148 Sentence denotes The sequences were further screened to be potential epitopes using the CTLPred online server (http://crdd.osdd.net/raghava/ctlpred/).
T99 13149-13345 Sentence denotes The ability of the predicted linear B-cell and the T-cell epitopes to mount interferon-gamma (IFN-γ) response was assessed using the IFNepitope (http://crdd.osdd.net/raghava/ifnepitope/index.php).
T100 13347-13354 Sentence denotes Results
T101 13355-13400 Sentence denotes Detection of SARS-CoV-2 in suspected samples:
T102 13401-13585 Sentence denotes Three of the 881 TS/nasal swab (NS) specimens from the suspected cases, tested positive for the SARS-CoV-2 using the real-time RT-PCR specific to E gene, RdRp (1), RdRp (2) and N gene.
T103 13586-13662 Sentence denotes The Ct value of the E gene ranged from 19.8 to 34.5 for the TS/NS specimens.
T104 13663-13793 Sentence denotes Detailed Ct values for the real-time RT-PCRs specific to the above-mentioned genes of the positive specimens are given in Table I.
T105 13794-13853 Sentence denotes Blood samples were found to be negative for the SARS-CoV-2.
T106 13854-14115 Sentence denotes Table I Real-time reverse transcription-polymerase chain reaction (RT-PCR) values for RdRp (1), RdRp (2), E gene and N gene, per cent genome coverage recovered and reads mapped for the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) positive cases
T107 14116-14282 Sentence denotes Positive cases Ct values for real-time RT-PCR for the confirmation of SARS-CoV-2 Relevant reads Total reads Genome length recovered (bp) Per cent genome coverage
T108 14283-14343 Sentence denotes RdRp (1) RdRp (2) E gene N gene Rnase P internal control
T109 14344-14421 Sentence denotes Case 1 33.33 27.93 34.5 33.90 Positive 20,096 5,615,846 29,854 99.83
T110 14422-14489 Sentence denotes Case 2 24.6 29 19.8 38 Positive 610 8,587,146 16,047 53.66
T111 14490-14710 Sentence denotes Case 3 34.17 32.64 28.98 36.35 Positive 11,296 1,405,038 29,851 99.83 Case 1 travelled from Wuhan, China, reached India on January 23, 2020 and further travelled to the final destination of Kerala on January 24.
T112 14711-14869 Sentence denotes This individual developed cough on January 25 and further experienced a sore throat and mild fever and was admitted to the General Hospital, Thrissur, Kerala.
T113 14870-14993 Sentence denotes The second case travelled from Wuhan and had close contact with case 1 during the travel to the final destination in India.
T114 14994-15149 Sentence denotes Case 2 developed similar symptoms along with fever and diarrhoea on January 26, and the collected TS specimens were referred to the ICMR-NIV on January 28.
T115 15150-15238 Sentence denotes The second case was hospitalized on January 30, in a medical college, Alappuzha, Kerala.
T116 15239-15298 Sentence denotes The clinical sample (TS) was collected on January 31, 2020.
T117 15299-15455 Sentence denotes Case 3 travelled from China to India, developed a runny nose on January 30 and was admitted to the General Hospital, Kasaragod, Kerala, on January 31, 2020.
T118 15456-15504 Sentence denotes TS specimens were collected on January 31, 2020.
T119 15505-15688 Sentence denotes NGS of SARS-CoV-2 from India - Phylogenetic analysis and molecular characterization: NGS analysis from the TS specimens retrieved two complete genome sequences from case 1 and case 3.
T120 15689-15858 Sentence denotes The complete genomic sequence data for case 2 could not be recovered due to the lower kappa concentration of the sample and hence not included in the study for analysis.
T121 15859-16018 Sentence denotes The FastQ files were reference mapped with the available Wuhan seafood pneumonia virus (Wuhan Hu-1) complete SARS-CoV-2 genome (accession number: NC 045512.2).
T122 16019-16140 Sentence denotes The total reads which were mapped and the percentage of the genome recovered for the two cases are summarized in Table I.
T123 16141-16350 Sentence denotes Analysis of the complete genome sequences of SARS-CoV-2 from the positive cases in India revealed that the percentage nt and aa differences between case 1 and case 3 were 0.038 and 0.10 per cent, respectively.
T124 16351-16479 Sentence denotes The sequences of case 1 and case 3 diverged from the Wuhan-Hu1 sequence by 0.017 per cent nt and 0.041 per cent aa respectively.
T125 16480-16627 Sentence denotes Indian SARS-CoV-2 clustered with the Sarbecovirus subgenus of the Betacoronavirus genus and was closest to the BatCoV RaTG13 sequence (96.09% nt)8.
T126 16628-16788 Sentence denotes The phylogenetic comparison showed the clustering of the genome sequences of case 1 and case 3 with the existing sequences of the SARS-CoV-2 sequences (Fig. 1).
T127 16789-16876 Sentence denotes The phylogeny revealed emerging heterogeneity within the SARS-CoV-2 sequences globally.
T128 16877-16945 Sentence denotes The Indian SARS-CoV-2 viruses were positioned in different clusters.
T129 16946-17055 Sentence denotes Fig. 1 Phylogenetic tree of the complete genomes of severe acute respiratory syndrome coronavirus 2 viruses.
T130 17056-17104 Sentence denotes Indian viruses are shown in magenta font colour.
T131 17105-17237 Sentence denotes Indian SARS-CoV-2 sequences showed two changes 408 Arg→Ile and 930 Ala→Val in the spike protein compared to the Wuhan Hu-1 sequence.
T132 17238-17456 Sentence denotes The mutations were further mapped on the spike protein model of the Indian sequence (Supplementary Fig. 1 (available from http://www.ijmr.org.in/articles/2020/151/2/images/IndianJMedRes_2020_151_2_200_281471_sm6.pdf)).
T133 17457-17661 Sentence denotes Deletion of a three-nucleotide stretch, encoding tyrosine residue at position 144, of the spike gene was also observed in the Indian SARS-CoV-2 from case 1 when compared to the other SARS-CoV-2 sequences.
T134 17662-17870 Sentence denotes As noted in the earlier SARS-CoV-2 sequences, both the Indian sequences possessed the polybasic cleavage site (RRAR) in the spike protein at the junction of S1 and S2, the two subunits of the spike protein19.
T135 17871-17891 Sentence denotes Epitope predictions:
T136 17892-18065 Sentence denotes Thirty one linear B-cell epitopes were predicted by Bepipred in the Indian SARS-CoV-2, of which three were found to have a length of <6 amino acids and hence not considered.
T137 18066-18195 Sentence denotes Linear epitopes were also predicted using the ABCpred prediction tool, which predicted 47 epitopes based on the threshold of 0.8.
T138 18196-18274 Sentence denotes Regions common to both the prediction methods (n=17) were identified manually.
T139 18275-18460 Sentence denotes The 17 epitopes were screened for their antigenicity using the VaxiJen v2.0 tool (http://www.ddg-pharmfac.net/vaxijen/VaxiJen/VaxiJen.html), and nine of these epitopes were shortlisted.
T140 18461-18591 Sentence denotes These epitopes were further screened for their ability to elicit an IFN-γ response, which was predicted using the IFNepitope tool.
T141 18592-18772 Sentence denotes Finally, five epitopes, four in the S1 domain and one in the S2 domain, were predicted, which could possibly generate an immune response and suppress the IFN-γ response (Table II).
T142 18773-18945 Sentence denotes N-linked glycosylation site prediction revealed that two putative glycosylation sites (with a low value for jury agreement) were present within the epitope stretch 328-344.
T143 18946-19071 Sentence denotes Table II Linear B-cell epitopes predicted on the spike protein of the Indian severe acute respiratory syndrome coronavirus 2
T144 19072-19145 Sentence denotes Peptide Epitope probability Vaxigen score Interferon (IFN)-γ response#
T145 19146-19207 Sentence denotes 243-HRSYLTPGDSSSGWTA-258 0.92 Antigen (0.602) Negative (1)
T146 19208-19274 Sentence denotes 327-FPNITNLCPFGEVFNA-342 0.82 Antigen (0.606) Negative (−0.132)
T147 19275-19336 Sentence denotes 404-EVIQIAPGQTGKIADY-419 0.86 Antigen (1.231) Negative (1)
T148 19337-19404 Sentence denotes 413-TGKIADYNYKLPDDFT-428 0.84 Antigen (0.9642) Negative (−0.334)
T149 19405-19468 Sentence denotes 1204-YEQYIKWPWYIWLGFI-1219 0.89 Antigen (0.951) Negative (1)
T150 19469-19570 Sentence denotes Epitopes were predicted using a combination of the Bepipred server and the ABCpred prediction server.
T151 19571-19630 Sentence denotes The antigenicity was predicted using the VaxiJen v2.0 tool.
T152 19631-19895 Sentence denotes IFN-γ response was predicted using the INFepitope server. #Values in bracket show prediction score given by the software The discontinuous epitopes in the spike protein of the Indian SARS-CoV-2 were further identified using multiple methods, Ellipro and DiscoTope.
T153 19896-20031 Sentence denotes Conformational epitopes based on these methods were mapped on the pre-fusion structure of the modelled Indian SARS-CoV-2 spike protein.
T154 20032-20157 Sentence denotes The newly released structure of the SARS-CoV-2 spike protein was used as the template for modelling the Indian spike protein.
T155 20158-20343 Sentence denotes Ramachandran plot statistics revealed 83.7 per cent of the residues to be in the core region, 14.4 per cent in the additionally allowed region and 0.5 per cent in the disallowed region.
T156 20344-20555 Sentence denotes Four epitopes were predicted by Ellipro based on the PI threshold of 0.8 (Supplementary Table II (available from http:/ /www. ijmr.org.in/articles/2020/151/2/images/IndianJMedRes_2020_151_2_200_281471_sm7.pdf)).
T157 20556-20740 Sentence denotes The result from the DiscoTope is presented in Supplementary Table III (available from http://www.ijmr.org.in/articles/ 2020/151/2/ images/ IndianJMedRes_2020_151_2_200_281471_sm8.pdf).
T158 20741-20801 Sentence denotes The mapped conformational epitopes are depicted in Figure 2.
T159 20802-21293 Sentence denotes For the purpose of comparison, the Indian S protein sequence was also modelled using the pre-fusion structure of SARS-CoV-1 (6ACC.PDB; 87.29% identity), and the results for the conformational epitopes predicted are in Supplementary Table IV (available from http://www.ijmr.org.in/articles/2020/151/2/images/IndianJMedRes_2020_151_2_200_28147 1_sm9.pdf and Supplementary Figure 2 (available from http://www.ijmr.org.in/articles/2020/151/2/images/IndianJMedRes_2020_151_2_200_281471_sm10.pdf).
T160 21294-21511 Sentence denotes Supplementary Table II Conformational B-cell epitopes predicted by Ellipro based on the chains A, B and C of the Indian severe acute respiratory syndrome coronavirus 2 spike protein modelled structure (template used:
T161 21512-21522 Sentence denotes 6VSB.PDB).
T162 21523-21575 Sentence denotes Ellipro protusion Index threshold set to 0.8 cut-off
T163 21576-21598 Sentence denotes Chain A Ellipro Score
T164 21599-21663 Sentence denotes 1 D1137, P1138, L1139, Q1140, P1141, E1142, L1143, D1144 0.984
T165 21664-22011 Sentence denotes 2 Y705, S706, N707, N708, S709, T1074, T1075, A1076, P1077, A1078, I1079, C1080, H1081, D1082, G1083, K1084, A1085, H1086, F1087, P1088, R1089, E1090, G1091, F1093, V1094, S1095, N1096, G1097, T1098, H1099, W1100, F1101, V1102, Y1108, E1109, P1110, Q1111, I1112, I1113, T1114, T1115, D1116, N1117, T1118, F1119, V1120, S1121, G1122, N1123, 0.906
T166 22012-22620 Sentence denotes 3 N341, A342, T343, R344, F345, A346, S347, V348, Y349, A350, W351, N352, S397, F398, V399, I400, R401, E404, Q412, T413, G414, K415, I416, A417, D418, Y419, N420, Y421, K422, L423, S436, N437, N438, L439, D440, S441, K442, V443, G444, G445, N446, Y447, N448, Y449, L450, Y451, R452, L453, F454, R455, K456, S457, N458, L459, K460, P461, F462, E463, R464, D465, I466, S467, T468, E469, I470, Y471, Q472, A473, G474, S475, T476, P477, C478, N479, G480, V481, G483, F484, N485, C486, Y487, F488, P489, L490, Q491, S492, Y493, G494, F495, Q496, P497, T498, N499, G500, V501, G502, Y503, Q504, P505, R507 0.887
T167 22621-22935 Sentence denotes 4 I68, H69, V70, S71, G72, T73, N74, G75, T76, K77, R78, S98, I100, C136, D138, F140, G142, Y143, H144, K145, N146, N147, K148, S149, W150, M151, E152, S153, E154, F155, R156, N183, F184, A241, L242, H243, R244, S245, Y246, L247, T248, P249, G250, D251, S252, S253, S254, G255, W256, T257, A258, G259, A260 0.876
T168 22936-22943 Sentence denotes Chain B
T169 22944-23480 Sentence denotes 1 A704, Y705, S706, N707, N708, S709, F1073, T1074, T1075, A1076, P1077, A1078, I1079, C1080, H1081, D1082, G1083, K1084, A1085, H1086, F1087, P1088, R1089,E1090, G1091, V1092,F1093, V1094, S1095, N1096, G1097, T1098, H1099, W1100, F1101, V1102, T1103, Q1104, R1105, F1107, Y1108, E1109,P1110, Q1111, I1112, I1113, T1114, T1115, D1116, N1117, T1118, F1119, V1120, S1121, G1122, N1123, C1124, D1125, V1126, V1127, I1128, G1129, I1130, V1131, N1132, N1133, T1134, V1135, Y1136, D1137, P1138, L1139, Q1140,P1141,E1142, L1143, D1144 0.902
T170 23481-24029 Sentence denotes 2 N341, A342, T343, F345, A346, S347, V348, Y349, A350, W351, V399, R401, G402, T413, G414, K415, D418, Y419, N420, Y421, K422, S436, N437, N438, L439, D440, S441, K442, V443, G444, G445, N446, Y447, N448, Y449, L450, Y451, R452, L453, F454, R455, K456, S457, N458, L459, K460, P461, E463, R464, D465, I466, S467, T468, E469, I470, Y471, Q472, A473, G474, S475, T476, P477, C478, N479, G480, V481, E482, G483, F484, N485, C486, Y487, F488, P489, L490, Q491, S492, Y493, G494, F495, Q496, P497, T498, N499, G500, V501, G502, Y503, Q504, P505 0.886
T171 24030-24412 Sentence denotes 3 A67, I68, H69, V70, S71, G72, T73, N74, G75, T76, K77, R78, E96, K97, S98, N99, I100, R102, N122, A123, T124, N125, C136, N137, D138, P139, F140, L141, G142, Y143, H144, K145, N146, N147, K148, S149, W150, M151, E152, S153, E154, F155, L239, L240, A241, L242, H243, R244, S245, Y246, L247, T248, P249, G250, D251, S252, S253, S254, G255, W256, T257, A258, G259, A260, A261 0.869
T172 24413-24420 Sentence denotes Chain C
T173 24421-24485 Sentence denotes 1 D1137, P1138, L1139, Q1140, P1141, E1142, L1143, D1144 0.984
T174 24486-24923 Sentence denotes 2 Y705, S706, N707, N708, S709, T1074, T1075, A1076, P1077, A1078, I1079, C1080, H1081, D1082, G1083, K1084, A1085, H1086, F1087, P1088, R1089, E1090, G1091, F1093, V1094, S1095, N1096, G1097, T1098, H1099, W1100, F1101, V1102, Y1108, E1109, P1110, Q1111, I1112, I1113, T1114, T1115, D1116, N1117, T1118, F1119, V1120, S1121, G1122, N1123, C1124, D1125, V1126, V1127, I1128, G1129, I1130, V1131, N1132, N1133, T1134, V1135, Y1136 0.906
T175 24924-25532 Sentence denotes 3 N341, A342, T343, R344, F345, A346, S347, V348, Y349, A350, W351, N352, S397, F398, V399, I400, R401, E404, Q412, T413, G414, K415, I416, A417, D418, Y419, N420, Y421, K422, L423, S436, N437, N438, L439, D440, S441, K442, V443, G444, G445, N446, Y447, N448, Y449, L450, Y451, R452, L453, F454, R455, K456, S457, N458, L459, K460, P461, F462, E463, R464, D465, I466, S467, T468, E469, I470, Y471, Q472, A473, G474, S475, T476, P477, C478, N479, G480, V481, G483, F484, N485, C486, Y487, F488, P489, L490, Q491, S492, Y493, G494, F495, Q496, P497, T498, N499, G500, V501, G502, Y503, Q504, P505, R507 0.887
T176 25533-25847 Sentence denotes 4 I68, H69, V70, S71, G72, T73, N74, G75, T76, K77, R78, S98, I100, C136, D138, F140, G142, Y143, H144, K145, N146, N147, K148, S149, W150, M151, E152, S153, E154, F155, R156, N183, F184, A241, L242, H243, R244, S245, Y246, L247, T248, P249, G250, D251, S252, S253, S254, G255, W256, T257, A258, G259, A260 0.876
T177 25848-26268 Sentence denotes Fig. 2 Predicted conformational B-cell epitopes mapped on the pre-fusion structure of the modelled Indian severe acute respiratory syndrome coronavirus 2 spike protein using the pre-fusion structure of severe acute respiratory syndrome-coronavirus-2 (6VSB.PDB) (colour key: blue - epitopes 67-261; green - epitopes 341-507 based on the predicted epitopes as shown in Supplementary Table II). (A) Top view (B) Side view.
T178 26269-26504 Sentence denotes Supplementary Table III Conformational B-cell epitopes predicted by the Discotope server based on the chain A, B and C of India severe acute respiratory syndrome coronavirus 2 spike protein modelled structure (template used 6VSB.PDB).
T179 26505-26544 Sentence denotes Discotope threshold set to -3.7 cut-off
T180 26545-27128 Sentence denotes CHAIN A 71S, 72G, 73T, 74N, 75G, 76T, 148K, 149S, 150W, 151M, 152E, 178E, 179G, 180K, 181Q, 209N, 245S, 247L, 248T, 250G, 252S, 253S, 440D, 441S, 442K, 443V, 444G, 445G, 446N, 447Y, 448N, 452R, 453L, 454F, 455R, 456K, 458N, 460K, 461P, 465D, 468T, 470I, 482E, 487Y, 488F, 489P, 490L, 491Q, 492S, 493Y, 494G, 495F, 496Q, 497P, 498T, 499N, 500G, 501V, 502G, 554N, 556K, 558L, 559P, 560F, 568A, 677N, 678S, 679P, 680R, 681R, 682A, 683R, 701N, 702S, 703V, 791P, 792I, 807P, 808S, 810P, 912N, 915Y, 916E, 1069Q, 1097G, 1099H, 1116D, 1137D, 1138P, 1139L, 1140Q, 1141P, 1142E, 1143L, 1144D
T181 27129-27689 Sentence denotes CHAIN B 70V, 73T, 74N, 75G, 76T, 147N, 148K, 149S, 150W, 151M, 176D, 177L, 178E, 179G, 180K, 181Q, 182G, 183N, 212R, 244R, 245S, 246Y, 247L, 248T, 249P, 250G, 251D, 252S, 253S, 254S, 255G, 256W, 438N, 441S, 442K, 443V, 444G, 445G, 446N, 447Y, 454F, 456K, 457S, 458N, 460K, 467S, 476T, 492S, 494G, 495F, 496Q, 497P, 498T, 499N, 500G, 501V, 502G, 503Y, 554N, 556K, 558L, 559P, 676T, 677N, 678S, 679P, 680R, 701N, 702S, 703V, 714T, 791P, 792I, 807P, 808S, 810P, 912N, 915Y, 916E, 1069Q, 1109E, 1112I, 1116D, 1137D, 1138P, 1139L, 1140Q, 1141P, 1142E, 1143L, 1144D
T182 27690-28201 Sentence denotes CHAIN C 72G, 73T, 74N, 75G, 97K, 98S, 143Y, 144H, 145K, 146N, 147N, 148K, 149S, 150W, 151M, 152E, 153S, 180K, 181Q, 182G, 183N, 184F, 209N, 252S, 253S, 441S, 442K, 443V, 444G, 445G, 446N, 447Y, 454F, 456K, 457S, 458N, 460K, 480G, 492S, 494G, 496Q, 497P, 498T, 499N, 500G, 501V, 502G, 503Y, 554N, 556K, 558L, 559P, 676T, 678S, 679P, 680R, 681R, 682A, 683R, 684S, 685V, 701N, 702S, 714T, 791P, 792I, 807P, 808S, 912N, 915Y, 916E, 1069Q, 1072N, 1098T, 1112I, 1116D, 1138P, 1139L, 1140Q, 1141P, 1142E, 1143L, 1144D
T183 28202-28332 Sentence denotes Supplementary Table IV Conformational B-cell epitopes predicted using the modelled structure of the spike protein (template used:
T184 28333-28443 Sentence denotes 6ACC.PDB; 87.29% identity). (A) Ellipro server (using a protusion Index threshold of 0.9) (B) DiscoTope server
T185 28444-28446 Sentence denotes A.
T186 28447-28473 Sentence denotes Ellipro epitope prediction
T187 28474-28521 Sentence denotes Epitope number Epitope residues Epitope score
T188 28522-28552 Sentence denotes 1 244-RSYLTPGDSSSGW-256 0.95
T189 28553-28656 Sentence denotes 2 347S, 349Y, 419Y, 441-SKVGGNYNYLYRLFR-455, 457S, 465-DISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTN -499 0.943
T190 28657-28753 Sentence denotes 3 1074 TTAPAICHDGKAHFPR 1089, 1094-VSNGTHWFV-1102, 1110- PQIITTDNTFVSGNCDVVIGIVNNTV-1135 0.934
T191 28754-28783 Sentence denotes 4 144-HKNNKSWMESE-154 0.912
T192 28784-28806 Sentence denotes 5 72-GTNGTK-77 0.907
T193 28807-28809 Sentence denotes B.
T194 28810-28838 Sentence denotes DiscoTope epitope prediction
T195 28839-29467 Sentence denotes G72, T73, N74, G75, K145, N146, N147, K148, S149, L174, E178, K180, Q181, G182, 183, V211, S245, Y246, L247, T248, P249, G250, D251, S252, S253, K415, N438, S441, K442, V443, G444, G445, N446, Y447, N448, K456, S457, N458, K460, A473, G474, S475, S492, G494, Q496, P497, T498, N499, G500, V501, Y503, N554, K556, L558, P559, I567, Q675, T676, N677, S678, P679, R680, R681, A682, R683, S702, V703, A704, Y705, T714, P791, P807, S808, K809, P810, E916, Q1069, E1070 T-cell epitope prediction revealed 105 strong binding epitopes capable of binding to different HLA types using the NetCTL1.2 software based on the threshold of 0.4.
T196 29468-29598 Sentence denotes Twelve of these were shortlisted, considering a binding efficiency of >0.5 nM and capable of eliciting IFN-γ response (Table III).
T197 29599-29731 Sentence denotes Table III Spike protein peptides capable of binding to major histocompatibility complex (MHC) class I predicted using NetCTL server
T198 29732-29819 Sentence denotes Peptide Vaxijen Interferon (IFN)-γ response CTLPred Score (ANN/SVM) MHC restriction
T199 29820-29923 Sentence denotes 89-GVYFASTEK-97 0.711 Positive (1) 0.58/0.986 HLA-A*1101, HLA-A3, HLA-A*3101, HLA-A68.1, HLA-B*2705
T200 29924-30157 Sentence denotes 166-FEYVSQPFL-174 0.632 Positive (0.087) 0.65/0.184 HLA-A2, HLA-A*0201, HLA-A*0205, HLA-A2.1, HLA-B*2702, HLA-B*2705, HLA-B*3701, HLA-B40, HLA-B*4403, HLA-B*5301, HLA-B*5401, HLA-B*51, HLA-B60, HLA-B61, HLA-Cw*0301, H2-Kb, H2-Kk,
T201 30158-30324 Sentence denotes 256-WTAGAAAYY-264 0.630 Positive (0.576) 0.82/0.544 HLA-A1, HLA-B*2702, HLA-B*3501, HLA-B*4403, HLA-B*5301, HLA-B*5401, HLA-B*51, HLA-B*5801, HLA-B62, HLA-Cw*0702
T202 30325-30468 Sentence denotes 348-VYAWNRKRI-356 0.500 Positive (0.499) 0.93/0.497 HLA-A24, HLA-B*5101, HLA-B*5102, HLA-B*5103, HLA-B*51, HLA-Cw*0401, H2-Db, H2-Kd, H2-Kk
T203 30469-30728 Sentence denotes 503-YQPYRVVVL-511 0.596 Positive (0.292) 0.40/0.596 HLA-A*0201, HLA-A*0205, HLA-A24, HLA-B14, HLA-B*2702, HLA-B*2705, HLA-B*3902, HLA-B*5201, HLA-B*5301, HLA-B*5401, HLA-B*51, HLA-B60, HLA-B62, HLA-B7, HLA-B8, HLA-Cw*0401, HLA-Cw*0602, H2-Dd, H2-Kb, H2-Ld
T204 30729-30846 Sentence denotes 510-VLSFELLHA-518 1.077 Positive (0.268) 0.86/0.276 HLA-A*0201, HLA-A*0205, HLA-A3, HLA-B*5301, HLA-B*51, HLA-B62
T205 30847-30973 Sentence denotes 825-TLADAGFIK-833 0.578 Positive (0.014) 0.75/0.992 HLA-A1, HLA-A*1101, HLA-A3, HLA-A*3101, HLA-A68.1, HLA-A20, HLA-B*2705
T206 30974-31170 Sentence denotes 1058-VVFLHVTYV-1066 1.512 Positive (1) 0.77/0.779 HLA-A2, HLA-A*0201, HLA-A*0205, HLA-A68.1, HLA-A2.1, HLA-B14, HLA-B*5101, HLA-B*5102, HLA-B*5103, HLA-B*5201, HLA-B*5301, HLA-B*5401, HLA-B*51
T207 31171-31411 Sentence denotes 1210-WPWYIWLGF-1218 1.495 Positive (0.221) 0.68/0.0695 HLA-B*2702, HLA-B*2705, HLA-B*3501, HLA-B*3801, HLA-B*5101, HLA-B*5102, HLA-B*5201, HLA-B*5301, HLA-B*5401, HLA-B*51, HLA-B*5801, HLA-B62, HLA-B*0702, HLA-Cw*0401, HLA-Cw*0702.H2-Ld
T208 31412-31486 Sentence denotes Threshold of >0.7 nM was used for increased specificity of the prediction.
T209 31487-31563 Sentence denotes The peptides were reconfirmed using CTLPred server using default parameters.
T210 31564-31687 Sentence denotes The peptides that were classified as epitopes were further checked for their antigenicity score using the VaxiJen v2.0 tool
T211 31689-31699 Sentence denotes Discussion
T212 31700-31834 Sentence denotes Till February 29, 2020, three positive cases of SARS-CoV-2 were reported from India from 881 suspected cases tested at ICMR-NIV, Pune.
T213 31835-31915 Sentence denotes All the three cases had a travel history from Wuhan, China, during January 2020.
T214 31916-32070 Sentence denotes Although NGS was performed on the specimens for all the three positive cases, the complete genome sequence could be retrieved only from case 1 and case 3.
T215 32071-32240 Sentence denotes The three cases were recovered after hospitalization and were home quarantined as per the guidelines of the Ministry of Health and Family Welfare, Government of India14.
T216 32241-32417 Sentence denotes The low viral copy number of the TS specimen from case 2 could be the possible reason for lesser viral reads being retrieved during the NGS run, leading to a fragmented genome.
T217 32418-32559 Sentence denotes The recent study from China on serial samples (TSs, sputum, urine and stool) from two patients followed days 3-12 and days 4-15 post onset20.
T218 32560-32760 Sentence denotes N gene-specific real-time RT-PCR assay showed that the viral loads in TS and sputum samples peaked at around 5-6 days after symptom onset, ranging from around 104-107 copies per ml during this time20.
T219 32761-32916 Sentence denotes In another study, the virus was detected in the saliva specimens of 11 of the 12 patients, and serial saliva testing showed declines of viral RNA levels21.
T220 32917-33118 Sentence denotes The two Indian SARS-CoV-2 sequences were found to be non-identical (0.04% nt divergence), and the result of phylogenetic analysis indicated that there were two different introductions into the country.
T221 33119-33330 Sentence denotes A recent study using 52 published GenBank sequences showed evidence of substantial genetic heterogeneity and estimated the time to the most recent common ancestor to be December 5, 2019 (95% confidence interval:
T222 33331-33365 Sentence denotes November 6 - December 13, 2019)22.
T223 33366-33541 Sentence denotes Continuous monitoring and analysis of the sequences from the affected countries would be vital to understand the genetic evolution and rates of substitution of the SARS-CoV-2.
T224 33542-33733 Sentence denotes The comparison of the amino acid sequences of the non-structural (nsp1-nsp16) and structural polyproteins was undertaken with reference to the Wuhan-Hu1 strain for molecular characterization.
T225 33734-33916 Sentence denotes Some human Betacoronaviruses, including HCoV-HKU1 (lineage A), have a polybasic cleavage site as well as predicted O-linked glycans near the S1/S2 cleavage site of the spike protein.
T226 33917-34118 Sentence denotes As published recently, the polybasic cleavage site that has not been previously observed in related lineage B Betacoronaviruses and is a unique feature of SARS-CoV-2 was noted in the Indian SARS-CoV-2.
T227 34119-34263 Sentence denotes The mutation Arg408Ile in the spike protein of one of the Indian sequences is noted to be in the RBD and Ala930Val, is located in the S2 domain.
T228 34264-34332 Sentence denotes However, both are away from the ACE2 receptor-binding interface1923.
T229 34333-34510 Sentence denotes Mutations in the spike protein sequences of SARS-CoV-2 observed currently are localized over the S1 and S2 domains and, so far have not been found in the ACE2-binding interface.
T230 34511-34897 Sentence denotes From the alignment of the spike protein sequences of SARS CoV-1 and SARS-CoV-2 (Wuhan-Hu1 and India), it can be observed that the three nucleotide-deletion in the case 1 SARS-CoV-2 from India, is located close to the insert 1 region of the SARS CoV-1 (Supplementary Fig. 3 (available from http://www.ijmr.org.in/articles/2020/151/2/images/IndianJMedRes_2020_151_2_200_281471_sm11.pdf)).
T231 34898-35103 Sentence denotes Notably, case 1 and case 2 were in close contact while travelling to India, but due to the absence of the complete genome of case 2, the genetic relatedness and source of infection could not be pinpointed.
T232 35104-35213 Sentence denotes Among the SARS-CoV structural proteins, the spike protein has been found to elicit neutralizing antibodies24.
T233 35214-35377 Sentence denotes In this study, it was observed that of the five B-cell linear epitopes, which were predicted, four epitopes were present in the S1 domain and one in the S2 domain.
T234 35378-35699 Sentence denotes Prediction of conformational B-cell epitopes revealed that one of these (residue positions 341-505) in the spike protein incorporates two of the predicted linear epitopes (327-342 and 404-419) having good antigenicity along with a favourable IFN-γ response that enables differentiation and proliferation of the B-cells25.
T235 35700-35823 Sentence denotes Notably, an equivalent epitope (347-499) is predicted for the model generated using the SARS-CoV-1 S protein as a template.
T236 35824-35873 Sentence denotes In both cases, this epitope lies within the RBD6.
T237 35874-36048 Sentence denotes Although the epitope has two putative N-linked glycosylation sites within it at positions 330 and 332, the probability of these sites being actually glycosylated is very low.
T238 36049-36144 Sentence denotes A major immuno-dominant epitope has been reported from SARS-CoV between residues 441 and 70026.
T239 36145-36287 Sentence denotes Hence, the predicted B-cell conformational epitope identified in the present study may play an important role in initiating a B-cell response.
T240 36288-36423 Sentence denotes Among the five linear epitopes predicted in this study, epitopes 327-342 and 1204-1219 are conserved between SARS-CoV-2 and SARS-CoV-1.
T241 36424-36491 Sentence denotes Epitopes 243-258, 404-419 and 413-428 are found to have variations.
T242 36492-36612 Sentence denotes The spike protein of SARS-CoV has also been reported to be immunogenic and elicit high IFN-γ-specific T-cell response26.
T243 36613-36778 Sentence denotes The prediction results in this study revealed that nine possible CTL epitopes possessing good antigenicity and inducing IFN-γ response were present in the S protein.
T244 36779-36902 Sentence denotes A recent report27 also predicted T-cell epitopes in the S protein based on a similar ANN/SVM method and antigenicity score.
T245 36903-37033 Sentence denotes Although the IFN-γ response was not considered by these authors, it was noted that two of the predictions were found to be common.
T246 37034-37285 Sentence denotes Among the T-cell epitopes predicted in the present study, four epitopes 89-97 and 256-264 in the S1 domain and 825-833 and 1058-1066 in the S2 domain were found to have good CTL prediction scores with a broad HLA allele coverage of A and B supertypes.
T247 37286-37447 Sentence denotes These HLA supertypes being predominant in the Indian population, the predicted epitopes may be considered suitable for future experiments towards vaccine design.
T248 37448-37637 Sentence denotes To conclude, the prompt intervention by the Government of India and the health authorities of the State of Kerala, ensured that the said cases did not become secondary foci of transmission.
T249 37638-37861 Sentence denotes Further, the timely identification of SARS-CoV-2 in these suspected cases by the ICMR-NIV, Pune, has helped in the isolation of the patients, containment and enhanced surveillances for the virus and its restricted movement.
T250 37862-38044 Sentence denotes The availability of the genomic sequences of the identified cases will contribute to the public repositories and help towards the development of diagnostics, vaccines and antivirals.
T251 38045-38161 Sentence denotes The sequence data would also help in tracking the virus from its origin and evolution with its transmission in time.
T252 38162-38183 Sentence denotes Availability of data:
T253 38184-38285 Sentence denotes Sequences are deposited in GISAID database, with accession numbers EPI ISL 413522 and EPI ISL 413523.
T254 38287-38415 Sentence denotes Supplementary Table I Acknowledgement for the list of the sequences downloaded from GISAID database that were used in the study
T255 38416-38632 Sentence denotes Supplementary Fig. 1 Receptor-binding domain and mutations within the ‘S’ protein of the Indian severe acute respiratory syndrome coronavirus 2 mapped on the respective modelled structure (A) Side view (B) Top view.
T256 38633-39005 Sentence denotes Supplementary Fig. 2 Conformational B-cell epitopes predicted on the S protein of the Indian severe acute respiratory syndrome coronavirus (SARS-CoV-2) using the pre-fusion structure of SARS-CoV-1 (6ACC.PDB; 87.29%) (colour key: blue - epitope 1; green - epitope 2; yellow - epitope 4; pink - epitope 5 as indicated in Supplementary Table III) (A) Top view (B) Side view.
T257 39006-39238 Sentence denotes Supplementary Fig. 3 Alignment of Wuhan severe acute respiratory syndrome coronavirus 2, Indian severe acute respiratory syndrome (SARS-CoV-2) and SARS-CoV-1 (accession number: NC_004718) spike protein using CLC Genomics workbench.
T258 39239-39354 Sentence denotes Boxes represent the different insertions in the spike protein region of Indian SARS-CoV-2 (deletions in SARS-CoV-1.
T259 39355-39433 Sentence denotes S1 domain is highlighted in light red colour and the S2 domain in blue colour.
T260 39435-39449 Sentence denotes Acknowledgment
T261 39450-39837 Sentence denotes Authors acknowledge the encouragement and support extended by Prof. (Dr) Balram Bhargava, Secretary to the Government of India, Department of Health Research, Ministry of Health and Family Welfare, and Director-General, Indian Council of Medical Research (ICMR), New Delhi, and Drs Raman Gangakhedkar and Nivedita Gupta, Division of Epidemiology & Communicable Diseases, ICMR, New Delhi.
T262 39838-39972 Sentence denotes Authors thank the staff of ICMR-NIV, Pune, including Dr Gajanan Sapkal, Diagnostic Virology Group, staff of National Influenza Center:
T263 39973-39984 Sentence denotes Shrimati V.
T264 39985-39994 Sentence denotes Vipat, S.
T265 39995-40009 Sentence denotes Jadhav, Drs S.
T266 40010-40023 Sentence denotes Bharadwaj, R.
T267 40024-40035 Sentence denotes Ghug, Ms U.
T268 40036-40053 Sentence denotes Saha, Servshri H.
T269 40054-40064 Sentence denotes Kengle, A.
T270 40065-40075 Sentence denotes Awhale, V.
T271 40076-40088 Sentence denotes Malik, Ms A.
T272 40089-40104 Sentence denotes Jagtap, Shri A.
T273 40105-40123 Sentence denotes Gondhalikar, Ms S.
T274 40124-40140 Sentence denotes Digraskar, Ms P.
T275 40141-40157 Sentence denotes Malsane, Shri V.
T276 40158-40172 Sentence denotes Awatade, Ms S.
T277 40173-40188 Sentence denotes Bhorekar, Dr S.
T278 40189-40201 Sentence denotes Salve, Ms P.
T279 40202-40215 Sentence denotes Shinde, Dr B.
T280 40216-40231 Sentence denotes Nimhas, Shri T.
T281 40232-40426 Sentence denotes Raut, Maximum Containment Facility, Dr Sreelekshmy Mohandas, Shrimati Savita Patil, Shri Hitesh Dighe, Shrimati Ashwini Waghmare, Shri Shrikant Baradkar, Ms Kaumudi Kalale, Epidemiology Section:
T282 40427-40435 Sentence denotes Drs B.V.
T283 40436-40449 Sentence denotes Tandale, Y.K.
T284 40450-40473 Sentence denotes Gurav, Shilpa Tomar, A.
T285 40474-40509 Sentence denotes Devshetwar, Bioinformatics Section:
T286 40510-40635 Sentence denotes Shri Atul Walimbe, Shrimati Bhagyashree Kasbe, Shri Chandan Saini and Ms Deepika Chowdhary, Director Office, for her support.
T287 40636-40906 Sentence denotes Authors also acknowledge the contribution of Kerala State Officials for case monitoring, sample collection, packaging and shipment with the support of Dr Meenakshi, Additional DHS (Public Health), Department of Health Services, Dr Amar Fettle, State Nodal Officer, Dr R.
T288 40907-41024 Sentence denotes Nikhilesh Menon, Assistant Surgeon and Assistant Nodal Officer, Ernakulam, Department of Health Services, and Dr L.R.
T289 41025-41105 Sentence denotes Chithra, Assistant Surgeon, Department of Health Services, Government of Kerala.
T290 41106-41255 Sentence denotes Supplementary material available from http://www.ijmr.org.in/article.asp?issn=0971-5916;year=2020;volume=151;issue=2;spage=200;epage=209;aulast=Yadav
T291 41256-41288 Sentence denotes Financial support & sponsorship:
T292 41289-41294 Sentence denotes None.
T293 41295-41317 Sentence denotes Conflicts of Interest:
T294 41318-41323 Sentence denotes None.
T295 41324-41345 Sentence denotes † Equal contribution

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 1184-1193 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 2961-2970 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 14737-14742 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T4 14783-14794 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T5 14799-14809 Phenotype denotes mild fever http://purl.obolibrary.org/obo/HP_0011134
T6 15039-15044 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T7 15049-15058 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T8 15349-15359 Phenotype denotes runny nose http://purl.obolibrary.org/obo/HP_0031417
T9 15930-15939 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

2_test

Id Subject Object Predicate Lexical cue
32242873-29664366-47036564 8563-8565 29664366 denotes 15
32242873-31565258-47036565 8850-8852 31565258 denotes 17
32242873-27004904-47036566 9065-9068 27004904 denotes 018
32242873-27004904-47036567 9369-9371 27004904 denotes 18
32242873-27004904-47036568 9478-9480 27004904 denotes 18
32242873-32004758-47036569 16625-16626 32004758 denotes 8
32242873-31950516-47036570 32719-32722 31950516 denotes 104
32242873-31138817-47036571 34327-34331 31138817 denotes 1923
32242873-15210961-47036572 35210-35212 15210961 denotes 24
32242873-9916700-47036573 35696-35698 9916700 denotes 25
32242873-32007145-47036574 35871-35872 32007145 denotes 6
32242873-26038429-47036575 36138-36143 26038429 denotes 70026
32242873-26038429-47036576 36609-36611 26038429 denotes 26
32242873-32022276-47036577 36794-36796 32022276 denotes 27
T53539 8563-8565 29664366 denotes 15
T62421 8850-8852 31565258 denotes 17
T79581 9065-9068 27004904 denotes 018
T13164 9369-9371 27004904 denotes 18
T93390 9478-9480 27004904 denotes 18
T6574 16625-16626 32004758 denotes 8
T37244 32719-32722 31950516 denotes 104
T1135 34327-34331 31138817 denotes 1923
T80103 35210-35212 15210961 denotes 24
T68904 35696-35698 9916700 denotes 25
T89340 35871-35872 32007145 denotes 6
T29055 36138-36143 26038429 denotes 70026
T63478 36609-36611 26038429 denotes 26
T36379 36794-36796 32022276 denotes 27