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PMC:7253482 / 8421-8959 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
308 78-89 Species denotes coronavirus Tax:11118
309 478-491 Species denotes coronaviruses Tax:11118
310 39-55 Chemical denotes N-linked glycans
311 57-63 Chemical denotes glycan MESH:D011134
312 297-304 Chemical denotes glycans MESH:D011134
313 353-365 Chemical denotes oligomannose
314 383-390 Chemical denotes glycans MESH:D011134
315 396-402 Chemical denotes glycan MESH:D011134

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T55 92-99 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T49 186-188 http://purl.obolibrary.org/obo/UBERON_0003064 denotes IM
T50 193-195 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T51 252-254 http://purl.obolibrary.org/obo/UBERON_0003064 denotes IM
T52 259-261 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T83 48-55 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T84 92-99 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T85 126-129 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T86 130-133 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T87 186-188 Chemical denotes IM http://purl.obolibrary.org/obo/CHEBI_74073
T88 193-195 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T89 252-254 Chemical denotes IM http://purl.obolibrary.org/obo/CHEBI_74073
T90 259-261 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T91 297-304 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T92 383-390 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T1194 0-2 TO denotes To
T1195 3-12 VB denotes ascertain
T1196 13-16 DT denotes the
T1197 17-24 JJ denotes precise
T1198 25-35 NNS denotes structures
T1199 36-38 IN denotes of
T1200 39-47 JJ denotes N-linked
T1201 48-55 NNS denotes glycans
T1202 55-56 -COMMA- denotes ,
T1203 57-63 NN denotes glycan
T1204 64-69 NNS denotes pools
T1205 70-72 IN denotes of
T1206 73-77 DT denotes each
T1207 78-89 NN denotes coronavirus
T1208 90-91 NN denotes S
T1209 92-99 NN denotes protein
T1210 100-104 VBD denotes were
T1211 105-113 VBN denotes analysed
T1212 114-116 IN denotes by
T1213 117-129 JJ denotes negative-ion
T1214 130-155 NN denotes ion-mobility-electrospray
T1215 156-166 NN denotes ionisation
T1216 167-171 NN denotes mass
T1217 172-184 NN denotes spectrometry
T1218 185-186 -LRB- denotes (
T1219 186-192 NN denotes IM-ESI
T1220 193-195 NN denotes MS
T1221 195-196 -RRB- denotes )
T1222 197-198 -LRB- denotes (
T1223 198-211 JJ denotes Supplementary
T1224 212-218 NN denotes Fig. 1
T1225 218-219 -RRB- denotes )
T1226 221-231 JJ denotes Consistent
T1227 232-236 IN denotes with
T1228 237-240 DT denotes the
T1229 241-245 NN denotes UPLC
T1230 246-250 NNS denotes data
T1231 250-251 -COMMA- denotes ,
T1232 252-258 NNP denotes IM-ESI
T1233 259-261 NNP denotes MS
T1234 262-271 VBD denotes confirmed
T1235 272-274 DT denotes an
T1236 275-280 NN denotes array
T1237 281-283 IN denotes of
T1238 284-296 JJ denotes complex-type
T1239 297-304 NNS denotes glycans
T1240 305-312 VBG denotes ranging
T1241 313-317 IN denotes from
T1242 318-323 NN denotes mono-
T1243 324-326 TO denotes to
T1244 327-342 JJ denotes tetra-antennary
T1245 342-343 -COMMA- denotes ,
T1246 344-347 CC denotes but
T1247 348-352 RB denotes also
T1248 353-366 NN denotes oligomannose-
T1249 367-370 CC denotes and
T1250 371-382 JJ denotes hybrid-type
T1251 383-390 NNS denotes glycans
T1252 392-395 DT denotes The
T1253 396-402 NN denotes glycan
T1254 403-415 NNS denotes compositions
T1255 416-429 VBN denotes characterised
T1256 430-432 IN denotes in
T1257 433-436 DT denotes the
T1258 437-444 NNS denotes spectra
T1259 445-449 VBD denotes were
T1260 450-457 RB denotes largely
T1261 458-467 JJ denotes invariant
T1262 468-473 IN denotes among
T1263 474-477 DT denotes the
T1264 478-491 NNS denotes coronaviruses
T1265 492-496 IN denotes with
T1266 497-499 DT denotes no
T1267 500-505 JJ denotes major
T1268 506-516 JJ denotes structural
T1269 517-528 NNS denotes differences
T1270 529-537 VBN denotes observed
R1200 T1195 T1194 arg1Of ascertain,To
R1201 T1211 T1194 modOf analysed,To
R1202 T1198 T1195 arg2Of structures,ascertain
R1203 T1198 T1196 arg1Of structures,the
R1204 T1198 T1197 arg1Of structures,precise
R1205 T1198 T1199 arg1Of structures,of
R1206 T1201 T1199 arg2Of glycans,of
R1207 T1201 T1200 arg1Of glycans,N-linked
R1208 T1211 T1202 arg1Of analysed,","
R1209 T1204 T1203 arg1Of pools,glycan
R1210 T1204 T1205 arg1Of pools,of
R1211 T1209 T1205 arg2Of protein,of
R1212 T1209 T1206 arg1Of protein,each
R1213 T1209 T1207 arg1Of protein,coronavirus
R1214 T1209 T1208 arg1Of protein,S
R1215 T1204 T1210 arg1Of pools,were
R1216 T1211 T1210 arg2Of analysed,were
R1217 T1217 T1211 arg1Of spectrometry,analysed
R1218 T1204 T1211 arg2Of pools,analysed
R1219 T1217 T1212 arg2Of spectrometry,by
R1220 T1217 T1213 arg1Of spectrometry,negative-ion
R1221 T1217 T1214 arg1Of spectrometry,ion-mobility-electrospray
R1222 T1217 T1215 arg1Of spectrometry,ionisation
R1223 T1217 T1216 arg1Of spectrometry,mass
R1224 T1217 T1218 arg1Of spectrometry,(
R1225 T1220 T1218 arg2Of MS,(
R1226 T1221 T1218 arg3Of ),(
R1227 T1220 T1219 arg1Of MS,IM-ESI
R1228 T1217 T1222 arg1Of spectrometry,(
R1229 T1224 T1222 arg2Of Fig. 1,(
R1230 T1225 T1222 arg3Of ),(
R1231 T1224 T1223 arg1Of Fig. 1,Supplementary
R1232 T1234 T1226 arg1Of confirmed,Consistent
R1233 T1226 T1227 arg1Of Consistent,with
R1234 T1230 T1227 arg2Of data,with
R1235 T1230 T1228 arg1Of data,the
R1236 T1230 T1229 arg1Of data,UPLC
R1237 T1234 T1231 arg1Of confirmed,","
R1238 T1233 T1232 arg1Of MS,IM-ESI
R1239 T1233 T1234 arg1Of MS,confirmed
R1240 T1236 T1234 arg2Of array,confirmed
R1241 T1236 T1235 arg1Of array,an
R1242 T1236 T1237 arg1Of array,of
R1243 T1239 T1237 arg2Of glycans,of
R1244 T1239 T1238 arg1Of glycans,complex-type
R1245 T1239 T1240 arg1Of glycans,ranging
R1246 T1240 T1241 arg1Of ranging,from
R1247 T1242 T1241 arg2Of mono-,from
R1248 T1242 T1243 arg1Of mono-,to
R1249 T1246 T1243 arg2Of but,to
R1250 T1246 T1245 arg1Of but,","
R1251 T1244 T1246 arg1Of tetra-antennary,but
R1252 T1249 T1246 arg2Of and,but
R1253 T1246 T1247 arg1Of but,also
R1254 T1248 T1249 arg1Of oligomannose-,and
R1255 T1251 T1249 arg2Of glycans,and
R1256 T1251 T1250 arg1Of glycans,hybrid-type
R1257 T1254 T1252 arg1Of compositions,The
R1258 T1254 T1253 arg1Of compositions,glycan
R1259 T1254 T1255 arg2Of compositions,characterised
R1260 T1255 T1256 arg1Of characterised,in
R1261 T1258 T1256 arg2Of spectra,in
R1262 T1258 T1257 arg1Of spectra,the
R1263 T1254 T1259 arg1Of compositions,were
R1264 T1261 T1259 arg2Of invariant,were
R1265 T1261 T1260 arg1Of invariant,largely
R1266 T1254 T1261 arg1Of compositions,invariant
R1267 T1261 T1262 arg1Of invariant,among
R1268 T1264 T1262 arg2Of coronaviruses,among
R1269 T1264 T1263 arg1Of coronaviruses,the
R1270 T1264 T1265 arg1Of coronaviruses,with
R1271 T1269 T1265 arg2Of differences,with
R1272 T1269 T1266 arg1Of differences,no
R1273 T1269 T1267 arg1Of differences,major
R1274 T1269 T1268 arg1Of differences,structural
R1275 T1269 T1270 arg2Of differences,observed

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T55 92-99 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T69 48-55 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T70 92-99 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T71 126-129 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T72 130-133 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T73 297-304 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T74 383-390 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T47 0-220 Sentence denotes To ascertain the precise structures of N-linked glycans, glycan pools of each coronavirus S protein were analysed by negative-ion ion-mobility-electrospray ionisation mass spectrometry (IM-ESI MS) (Supplementary Fig. 1).
T48 221-391 Sentence denotes Consistent with the UPLC data, IM-ESI MS confirmed an array of complex-type glycans ranging from mono- to tetra-antennary, but also oligomannose- and hybrid-type glycans.
T49 392-538 Sentence denotes The glycan compositions characterised in the spectra were largely invariant among the coronaviruses with no major structural differences observed.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
310 39-55 Chemical denotes N-linked glycans
311 57-63 Chemical denotes glycan MESH:D011134
308 78-89 Species denotes coronavirus Tax:11118
312 297-304 Chemical denotes glycans MESH:D011134
313 353-365 Chemical denotes oligomannose
314 383-390 Chemical denotes glycans MESH:D011134
315 396-402 Chemical denotes glycan MESH:D011134
309 478-491 Species denotes coronaviruses Tax:11118

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T2581 90-99 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T2614 189-192 Protein denotes ESI https://www.uniprot.org/uniprot/Q6FG74|https://www.uniprot.org/uniprot/P19957|https://www.uniprot.org/uniprot/E1P618
T2617 255-258 Protein denotes ESI https://www.uniprot.org/uniprot/Q6FG74|https://www.uniprot.org/uniprot/P19957|https://www.uniprot.org/uniprot/E1P618

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T47 0-220 Sentence denotes To ascertain the precise structures of N-linked glycans, glycan pools of each coronavirus S protein were analysed by negative-ion ion-mobility-electrospray ionisation mass spectrometry (IM-ESI MS) (Supplementary Fig. 1).
T48 221-391 Sentence denotes Consistent with the UPLC data, IM-ESI MS confirmed an array of complex-type glycans ranging from mono- to tetra-antennary, but also oligomannose- and hybrid-type glycans.
T49 392-538 Sentence denotes The glycan compositions characterised in the spectra were largely invariant among the coronaviruses with no major structural differences observed.