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PMC:7253482 / 601-864 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
28 82-86 Species denotes CoVs Tax:11118
29 144-155 Species denotes coronavirus Tax:11118
30 199-204 Species denotes HIV-1 Tax:11676
31 215-226 Species denotes Lassa virus Tax:11620
32 253-262 Species denotes influenza Tax:11320
35 12-24 Chemical denotes oligomannose
36 30-36 Chemical denotes glycan MESH:D011134
37 126-132 Chemical denotes glycan MESH:D011134
43 68-72 Disease denotes SARS MESH:D045169

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 180-188 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T4 199-202 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T5 227-239 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 68-72 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T4 253-262 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T3 99-100 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 221-226 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 180-188 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T4 227-239 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T5 221-226 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T93 9-11 IN denotes of
T94 12-29 JJ denotes oligomannose-type
T95 30-36 NN denotes glycan
T96 37-45 NNS denotes clusters
T97 45-46 -COMMA- denotes ,
T98 47-52 WDT denotes which
T99 53-57 VBD denotes were
T100 58-64 JJ denotes absent
T101 65-67 IN denotes on
T102 68-72 NNS denotes SARS
T103 73-76 CC denotes and
T104 77-81 NN denotes HKU1
T105 82-86 NNS denotes CoVs
T106 88-90 PRP denotes We
T107 91-98 VBP denotes provide
T108 99-100 DT denotes a
T109 101-111 NN denotes comparison
T110 112-114 IN denotes of
T111 115-118 DT denotes the
T112 119-125 JJ denotes global
T113 126-132 NN denotes glycan
T114 133-140 NN denotes density
T115 141-143 IN denotes of
T116 144-155 NN denotes coronavirus
T117 156-162 NNS denotes spikes
T118 163-167 IN denotes with
T119 168-173 JJ denotes other
T120 174-179 JJ denotes viral
T121 180-188 NNS denotes proteins
T122 189-198 VBG denotes including
T123 199-204 NN denotes HIV-1
T124 205-213 NN denotes envelope
T125 213-214 -COMMA- denotes ,
T126 215-220 NNP denotes Lassa
T127 221-226 NN denotes virus
T128 227-239 NN denotes glycoprotein
T129 240-247 NN denotes complex
T130 247-248 -COMMA- denotes ,
T131 249-252 CC denotes and
T132 253-262 NN denotes influenza
R90 T96 T93 arg2Of clusters,of
R91 T96 T94 arg1Of clusters,oligomannose-type
R92 T96 T95 arg1Of clusters,glycan
R93 T96 T97 arg1Of clusters,","
R94 T96 T98 arg1Of clusters,which
R95 T96 T99 arg1Of clusters,were
R96 T100 T99 arg2Of absent,were
R97 T96 T100 arg1Of clusters,absent
R98 T100 T101 arg1Of absent,on
R99 T103 T101 arg2Of and,on
R100 T102 T103 arg1Of SARS,and
R101 T105 T103 arg2Of CoVs,and
R102 T105 T104 arg1Of CoVs,HKU1
R103 T106 T107 arg1Of We,provide
R104 T109 T107 arg2Of comparison,provide
R105 T109 T108 arg1Of comparison,a
R106 T109 T110 arg1Of comparison,of
R107 T114 T110 arg2Of density,of
R108 T114 T111 arg1Of density,the
R109 T114 T112 arg1Of density,global
R110 T114 T113 arg1Of density,glycan
R111 T114 T115 arg1Of density,of
R112 T117 T115 arg2Of spikes,of
R113 T117 T116 arg1Of spikes,coronavirus
R114 T109 T118 arg1Of comparison,with
R115 T121 T118 arg2Of proteins,with
R116 T121 T119 arg1Of proteins,other
R117 T121 T120 arg1Of proteins,viral
R118 T121 T122 arg1Of proteins,including
R119 T131 T122 arg2Of and,including
R120 T124 T123 arg1Of envelope,HIV-1
R121 T124 T125 arg1Of envelope,","
R122 T129 T125 arg2Of complex,","
R123 T129 T126 arg1Of complex,Lassa
R124 T129 T127 arg1Of complex,virus
R125 T129 T128 arg1Of complex,glycoprotein
R126 T131 T130 arg1Of and,","
R127 T125 T131 arg1Of ",",and

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T3 180-188 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T4 199-202 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T5 227-239 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 180-188 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T4 227-239 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T5 68-72 Species denotes SARS NCBItxid:694009
T6 77-86 Species denotes HKU1 CoVs NCBItxid:290028
T7 199-204 Species denotes HIV-1 NCBItxid:11676
T8 215-226 Species denotes Lassa virus NCBItxid:11620

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 68-72 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T4 253-262 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
35 12-24 Chemical denotes oligomannose
36 30-36 Chemical denotes glycan MESH:D011134
43 68-72 Disease denotes SARS MESH:D045169
28 82-86 Species denotes CoVs Tax:11118
37 126-132 Chemical denotes glycan MESH:D011134
29 144-155 Species denotes coronavirus Tax:11118
30 199-204 Species denotes HIV-1 Tax:11676
31 215-226 Species denotes Lassa virus Tax:11620
32 253-262 Species denotes influenza Tax:11320

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T133 227-239 Protein denotes glycoprotein https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8