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PMC:7253482 / 5535-8959 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
198 44-49 Gene denotes spike Gene:43740568
199 0-6 Chemical denotes Glycan MESH:D011134
200 30-34 Disease denotes SARS MESH:D045169
201 39-43 Disease denotes MERS MESH:D018352
205 2021-2028 Chemical denotes glycans MESH:D011134
206 2001-2005 Disease denotes SARS MESH:D045169
207 2007-2011 Disease denotes MERS MESH:D018352
223 2080-2091 Species denotes coronavirus Tax:11118
224 2500-2516 Chemical denotes N-linked glycans
225 2545-2557 Chemical denotes Oligomannose
226 2563-2570 Chemical denotes glycans MESH:D011134
227 2582-2605 Chemical denotes Man5GlcNAc2–Man9GlcNAc2
228 2632-2639 Chemical denotes glycans MESH:D011134
229 2716-2722 Chemical denotes glycan MESH:D011134
230 2756-2768 Chemical denotes Oligomannose
231 2774-2781 Chemical denotes glycans MESH:D011134
232 2815-2822 Chemical denotes mannose MESH:D008358
233 2853-2859 Chemical denotes GlcNAc MESH:D000117
234 2060-2064 Disease denotes SARS MESH:D045169
235 2066-2070 Disease denotes MERS MESH:D018352
236 2522-2526 Disease denotes SARS MESH:D045169
237 2528-2532 Disease denotes MERS MESH:D018352
269 1286-1289 Gene denotes Env Gene:64006
270 1280-1285 Species denotes HIV-1 Tax:11676
271 1340-1363 Species denotes recombinant coronavirus Tax:575864
272 1483-1496 Species denotes Coronaviruses Tax:11118
273 1774-1785 Species denotes coronavirus Tax:11118
274 1911-1922 Species denotes recombinant Tax:575864
275 312-327 Chemical denotes N-linked glycan
276 444-456 Chemical denotes carbohydrate MESH:D002241
277 502-518 Chemical denotes N-linked glycans
278 801-813 Chemical denotes oligomannose
279 819-826 Chemical denotes glycans MESH:D011134
280 875-887 Chemical denotes oligomannose
281 893-900 Chemical denotes glycans MESH:D011134
282 930-946 Chemical denotes N-linked glycans
283 1099-1111 Chemical denotes oligomannose
284 1117-1124 Chemical denotes glycans MESH:D011134
285 1141-1152 Chemical denotes Man5GlcNAc2 MESH:C058642
286 1156-1167 Chemical denotes Man9GlcNAc2 MESH:C475461
287 1168-1175 Chemical denotes glycans MESH:D011134
288 1311-1323 Chemical denotes oligomannose
289 1329-1336 Chemical denotes glycans MESH:D011134
290 1686-1693 Chemical denotes glycans MESH:D011134
291 150-154 Disease denotes SARS MESH:D045169
292 159-163 Disease denotes MERS MESH:D018352
293 272-276 Disease denotes SARS MESH:D045169
294 278-282 Disease denotes MERS MESH:D018352
295 697-714 Disease denotes endoglycosidase H MESH:D000848
296 747-751 Disease denotes SARS MESH:D045169
297 759-763 Disease denotes MERS MESH:D018352
298 1440-1444 Disease denotes MERS MESH:D018352
299 1449-1476 Disease denotes SARS coronavirus S proteins MESH:D018455
308 2964-2975 Species denotes coronavirus Tax:11118
309 3364-3377 Species denotes coronaviruses Tax:11118
310 2925-2941 Chemical denotes N-linked glycans
311 2943-2949 Chemical denotes glycan MESH:D011134
312 3183-3190 Chemical denotes glycans MESH:D011134
313 3239-3251 Chemical denotes oligomannose
314 3269-3276 Chemical denotes glycans MESH:D011134
315 3282-3288 Chemical denotes glycan MESH:D011134

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T35 50-58 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T36 102-110 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T37 166-173 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T38 444-456 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T39 487-500 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T40 1033-1041 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T41 1257-1270 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T42 1280-1283 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T43 1366-1374 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T44 1568-1598 Body_part denotes lumen of endoplasmic reticulum http://purl.org/sig/ont/fma/fma84806
T45 1618-1630 Body_part denotes compartments http://purl.org/sig/ont/fma/fma76577
T46 1813-1828 Body_part denotes Golgi apparatus http://purl.org/sig/ont/fma/fma63843
T47 1881-1893 Body_part denotes cell surface http://purl.org/sig/ont/fma/fma67653
T48 1881-1885 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T49 1953-1966 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T50 2094-2107 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T51 2157-2167 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T52 2237-2250 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T53 2404-2409 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T54 2815-2822 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T55 2978-2985 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 2404-2409 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T23 30-34 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T24 150-154 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T25 272-276 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T26 747-751 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T27 1449-1453 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T28 2001-2005 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T29 2060-2064 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T30 2287-2290 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T32 2522-2526 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T33 2745-2748 Disease denotes pie http://purl.obolibrary.org/obo/MONDO_0000923

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T35 71-72 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 268-270 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T37 294-299 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T38 562-570 http://purl.obolibrary.org/obo/CLO_0007225 denotes labelled
T39 733-734 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 1865-1867 http://purl.obolibrary.org/obo/CLO_0037161 denotes en
T41 1881-1885 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T42 2030-2031 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 2340-2343 http://purl.obolibrary.org/obo/CLO_0008975 denotes SD1
T44 2355-2362 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T45 2447-2448 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T46 2491-2499 http://purl.obolibrary.org/obo/CLO_0007225 denotes labelled
T47 2578-2580 http://purl.obolibrary.org/obo/CLO_0007490 denotes M9
T48 2743-2744 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T49 3072-3074 http://purl.obolibrary.org/obo/UBERON_0003064 denotes IM
T50 3079-3081 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T51 3138-3140 http://purl.obolibrary.org/obo/UBERON_0003064 denotes IM
T52 3145-3147 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T45 0-6 Chemical denotes Glycan http://purl.obolibrary.org/obo/CHEBI_18154
T46 50-58 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T47 102-110 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T48 166-173 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T49 174-182 Chemical denotes antigens http://purl.obolibrary.org/obo/CHEBI_59132
T50 444-456 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T51 487-500 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T52 511-518 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T53 819-826 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T54 893-900 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T55 939-946 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T56 1033-1041 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T57 1117-1124 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T58 1168-1175 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T59 1257-1270 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T60 1329-1336 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T61 1366-1374 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T62 1686-1693 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T63 1865-1867 Chemical denotes en http://purl.obolibrary.org/obo/CHEBI_30347
T64 1953-1966 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T65 2021-2028 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T66 2094-2107 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T67 2157-2162 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T68 2163-2167 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T69 2237-2250 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T70 2355-2362 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T71 2364-2366 Chemical denotes FP http://purl.obolibrary.org/obo/CHEBI_74750
T72 2442-2444 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T74 2509-2516 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T75 2563-2570 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T76 2578-2580 Chemical denotes M9 http://purl.obolibrary.org/obo/CHEBI_140164
T77 2632-2639 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T78 2641-2648 Chemical denotes magenta http://purl.obolibrary.org/obo/CHEBI_87661
T79 2774-2781 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T80 2815-2822 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T81 2853-2859 Chemical denotes GlcNAc http://purl.obolibrary.org/obo/CHEBI_506227|http://purl.obolibrary.org/obo/CHEBI_73685
T83 2934-2941 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T84 2978-2985 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T85 3012-3015 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T86 3016-3019 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T87 3072-3074 Chemical denotes IM http://purl.obolibrary.org/obo/CHEBI_74073
T88 3079-3081 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T89 3138-3140 Chemical denotes IM http://purl.obolibrary.org/obo/CHEBI_74073
T90 3145-3147 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T91 3183-3190 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T92 3269-3276 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T21 1014-1019 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T22 1540-1547 http://purl.obolibrary.org/obo/IDO_0000508 denotes virions
T23 1786-1793 http://purl.obolibrary.org/obo/IDO_0000508 denotes virions
T24 1835-1841 http://purl.obolibrary.org/obo/IDO_0000508 denotes virion
T25 1881-1885 http://purl.obolibrary.org/obo/CL_0000000 denotes cell

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T828 0-6 NN denotes Glycan
T829 7-17 NN denotes processing
T830 18-20 IN denotes of
T831 21-29 JJ denotes trimeric
T832 30-34 NNS denotes SARS
T833 35-38 CC denotes and
T834 39-43 NNS denotes MERS
T835 44-49 NN denotes spike
T836 50-58 NNS denotes proteins
T837 59-61 TO denotes To
T838 62-70 VB denotes generate
T839 71-72 DT denotes a
T840 73-80 JJ denotes soluble
T841 81-86 NN denotes mimic
T842 87-89 IN denotes of
T843 90-93 DT denotes the
T844 94-99 JJ denotes viral
T845 100-101 NN denotes S
T846 102-110 NNS denotes proteins
T847 110-111 -COMMA- denotes ,
T848 112-114 PRP denotes we
T849 115-119 VBD denotes used
T850 120-123 DT denotes the
T851 124-137 JJ denotes 2P-stabilised
T852 138-149 JJ denotes native-like
T853 150-154 NNS denotes SARS
T854 155-158 CC denotes and
T855 159-163 NNS denotes MERS
T856 164-165 NN denotes S
T857 166-173 NN denotes protein
T858 174-182 NNS denotes antigens
T859 182-183 -COMMA- denotes ,
T860 184-187 DT denotes the
T861 188-194 NN denotes design
T862 195-198 CC denotes and
T863 199-209 NNS denotes structures
T864 210-212 IN denotes of
T865 213-218 WDT denotes which
T866 219-223 VBP denotes have
T867 224-228 VBN denotes been
T868 229-238 VBN denotes described
T869 239-249 RB denotes previously
T870 250-252 IN denotes by
T871 253-261 NNP denotes Pallesen
T872 262-264 NNP denotes et
T873 265-270 NN denotes al.41
T874 272-276 NNS denotes SARS
T875 276-277 -COMMA- denotes ,
T876 278-282 NNS denotes MERS
T877 283-286 CC denotes and
T878 287-291 NN denotes HKU1
T879 292-293 NN denotes S
T880 294-299 NNS denotes genes
T881 300-306 VBP denotes encode
T882 307-311 JJ denotes many
T883 312-320 JJ denotes N-linked
T884 321-327 NN denotes glycan
T885 328-335 NNS denotes sequons
T886 335-336 -SEMICOLON- denotes ;
T887 337-339 CD denotes 23
T888 339-340 -COMMA- denotes ,
T889 341-343 CD denotes 23
T890 344-347 CC denotes and
T891 348-350 CD denotes 29
T892 350-351 -COMMA- denotes ,
T893 352-364 RB denotes respectively
T894 365-366 -LRB- denotes (
T895 366-373 NN denotes Fig. 1a
T896 373-374 -RRB- denotes )
T897 376-378 PRP denotes We
T898 379-388 RB denotes initially
T899 389-395 VBD denotes sought
T900 396-398 TO denotes to
T901 399-413 RB denotes quantitatively
T902 414-420 VB denotes assess
T903 421-424 DT denotes the
T904 425-436 NN denotes composition
T905 437-439 IN denotes of
T906 440-443 DT denotes the
T907 444-456 NN denotes carbohydrate
T908 457-467 NNS denotes structures
T909 468-477 VBD denotes displayed
T910 478-480 IN denotes on
T911 481-484 DT denotes the
T912 485-486 NN denotes S
T913 487-500 NNS denotes glycoproteins
T914 502-510 VBN denotes N-linked
T915 511-518 NNS denotes glycans
T916 519-523 VBD denotes were
T917 524-537 RB denotes enzymatically
T918 538-546 VBN denotes released
T919 546-547 -COMMA- denotes ,
T920 548-561 RB denotes fluorescently
T921 562-570 VBN denotes labelled
T922 570-571 -COMMA- denotes ,
T923 572-575 CC denotes and
T924 576-585 VBN denotes subjected
T925 586-588 TO denotes to
T926 589-600 JJ denotes hydrophilic
T927 601-612 NN denotes interaction
T928 613-645 NN denotes chromatography-ultra-performance
T929 646-652 NN denotes liquid
T930 653-667 NN denotes chromatography
T931 668-669 -LRB- denotes (
T932 669-679 NN denotes HILIC-UPLC
T933 679-680 -RRB- denotes )
T934 682-691 NN denotes Treatment
T935 692-696 IN denotes with
T936 697-712 NN denotes endoglycosidase
T937 713-714 NN denotes H
T938 715-716 -LRB- denotes (
T939 716-720 NNP denotes Endo
T940 721-722 NN denotes H
T941 722-723 -RRB- denotes )
T942 724-732 VBD denotes revealed
T943 733-734 DT denotes a
T944 735-745 NN denotes population
T945 746-747 -LRB- denotes (
T946 747-751 NN denotes SARS
T947 752-756 CD denotes 32.2
T948 756-757 NN denotes %
T949 757-758 -SEMICOLON- denotes ;
T950 759-763 NNS denotes MERS
T951 764-768 CD denotes 33.8
T952 768-769 NN denotes %
T953 769-770 -COMMA- denotes ,
T954 771-775 NN denotes HKU1
T955 776-780 CD denotes 25.0
T956 780-781 NN denotes %
T957 781-782 -RRB- denotes )
T958 783-785 IN denotes of
T959 786-800 VBN denotes underprocessed
T960 801-818 JJ denotes oligomannose-type
T961 819-826 NNS denotes glycans
T962 827-828 -LRB- denotes (
T963 828-835 NN denotes Fig. 1b
T964 835-836 -RRB- denotes )
T965 838-842 DT denotes This
T966 843-854 NN denotes observation
T967 855-857 IN denotes of
T968 858-862 CC denotes both
T969 863-870 JJ denotes complex
T970 871-874 CC denotes and
T971 875-892 JJ denotes oligomannose-type
T972 893-900 NNS denotes glycans
T973 901-908 VBZ denotes reveals
T974 909-913 IN denotes that
T975 914-917 DT denotes the
T976 918-926 NN denotes majority
T977 927-929 IN denotes of
T978 930-938 JJ denotes N-linked
T979 939-946 NNS denotes glycans
T980 947-950 MD denotes can
T981 951-953 VB denotes be
T982 954-963 VBN denotes processed
T983 963-964 -COMMA- denotes ,
T984 965-973 IN denotes although
T985 974-979 EX denotes there
T986 980-982 VBZ denotes is
T987 983-990 JJ denotes limited
T988 991-1001 NN denotes processing
T989 1002-1004 IN denotes at
T990 1005-1013 JJ denotes specific
T991 1014-1019 NNS denotes sites
T992 1020-1026 IN denotes across
T993 1027-1030 DT denotes the
T994 1031-1032 NN denotes S
T995 1033-1041 NNS denotes proteins
T996 1043-1045 PRP denotes It
T997 1046-1048 VBZ denotes is
T998 1049-1053 RB denotes also
T999 1054-1065 JJ denotes interesting
T1000 1066-1068 TO denotes to
T1001 1069-1073 VB denotes note
T1002 1074-1078 IN denotes that
T1003 1079-1082 DT denotes the
T1004 1083-1095 NN denotes distribution
T1005 1096-1098 IN denotes of
T1006 1099-1116 JJ denotes oligomannose-type
T1007 1117-1124 NNS denotes glycans
T1008 1125-1128 VBD denotes was
T1009 1129-1134 JJ denotes broad
T1010 1134-1135 -COMMA- denotes ,
T1011 1136-1140 IN denotes with
T1012 1141-1152 NN denotes Man5GlcNAc2
T1013 1153-1155 TO denotes to
T1014 1156-1167 NN denotes Man9GlcNAc2
T1015 1168-1175 NNS denotes glycans
T1016 1176-1179 DT denotes all
T1017 1180-1187 VBP denotes present
T1018 1187-1188 -COMMA- denotes ,
T1019 1189-1196 IN denotes without
T1020 1197-1200 CD denotes one
T1021 1201-1211 JJ denotes particular
T1022 1212-1220 JJ denotes dominant
T1023 1221-1225 NN denotes peak
T1024 1225-1226 -COMMA- denotes ,
T1025 1227-1229 IN denotes as
T1026 1230-1232 VBZ denotes is
T1027 1233-1236 DT denotes the
T1028 1237-1241 NN denotes case
T1029 1242-1245 IN denotes for
T1030 1246-1250 DT denotes some
T1031 1251-1256 JJ denotes viral
T1032 1257-1270 NNS denotes glycoproteins
T1033 1270-1271 -COMMA- denotes ,
T1034 1272-1276 JJ denotes such
T1035 1277-1279 IN denotes as
T1036 1280-1285 NN denotes HIV-1
T1037 1286-1291 NN denotes Env36
T1038 1293-1296 DT denotes The
T1039 1297-1307 NN denotes proportion
T1040 1308-1310 IN denotes of
T1041 1311-1328 JJ denotes oligomannose-type
T1042 1329-1336 NNS denotes glycans
T1043 1337-1339 IN denotes on
T1044 1340-1351 JJ denotes recombinant
T1045 1352-1363 NN denotes coronavirus
T1046 1364-1365 NN denotes S
T1047 1366-1374 NNS denotes proteins
T1048 1375-1377 VBZ denotes is
T1049 1378-1388 JJ denotes consistent
T1050 1389-1393 IN denotes with
T1051 1394-1402 JJ denotes previous
T1052 1403-1410 NNS denotes studies
T1053 1411-1420 VBN denotes performed
T1054 1421-1423 IN denotes on
T1055 1424-1431 RB denotes virally
T1056 1432-1439 VBN denotes derived
T1057 1440-1444 NNS denotes MERS
T1058 1445-1448 CC denotes and
T1059 1449-1453 NN denotes SARS
T1060 1454-1465 NN denotes coronavirus
T1061 1466-1467 NN denotes S
T1062 1468-1481 NN denotes proteins17,42
T1063 1483-1496 NNS denotes Coronaviruses
T1064 1497-1501 VBP denotes have
T1065 1502-1506 VBN denotes been
T1066 1507-1517 RB denotes previously
T1067 1518-1522 VBN denotes been
T1068 1523-1531 VBN denotes reported
T1069 1532-1534 TO denotes to
T1070 1535-1539 VB denotes form
T1071 1540-1547 NNS denotes virions
T1072 1548-1550 IN denotes by
T1073 1551-1558 VBG denotes budding
T1074 1559-1563 IN denotes into
T1075 1564-1567 DT denotes the
T1076 1568-1573 NN denotes lumen
T1077 1574-1576 IN denotes of
T1078 1577-1588 JJ denotes endoplasmic
T1079 1589-1604 JJ denotes reticulum-Golgi
T1080 1605-1617 JJ denotes intermediate
T1081 1618-1630 NNS denotes compartments
T1082 1631-1632 -LRB- denotes (
T1083 1632-1637 NN denotes ERGIC
T1084 1637-1638 -RRB- denotes )
T1085 1638-1643 CD denotes 43,44
T1086 1645-1657 NNS denotes Observations
T1087 1658-1660 IN denotes of
T1088 1661-1668 NN denotes hybrid-
T1089 1669-1672 CC denotes and
T1090 1673-1685 JJ denotes complex-type
T1091 1686-1693 NNS denotes glycans
T1092 1694-1696 IN denotes on
T1093 1697-1704 RB denotes virally
T1094 1705-1712 VBN denotes derived
T1095 1713-1726 NN denotes material17,42
T1096 1727-1732 MD denotes would
T1097 1732-1733 -COMMA- denotes ,
T1098 1734-1741 RB denotes however
T1099 1741-1742 -COMMA- denotes ,
T1100 1743-1750 VBP denotes suggest
T1101 1751-1755 IN denotes that
T1102 1756-1758 PRP denotes it
T1103 1759-1761 VBZ denotes is
T1104 1762-1768 JJ denotes likely
T1105 1769-1773 IN denotes that
T1106 1774-1785 NN denotes coronavirus
T1107 1786-1793 NNS denotes virions
T1108 1794-1800 VBP denotes travel
T1109 1801-1808 IN denotes through
T1110 1809-1812 DT denotes the
T1111 1813-1818 NNP denotes Golgi
T1112 1819-1828 NN denotes apparatus
T1113 1829-1834 IN denotes after
T1114 1835-1841 NN denotes virion
T1115 1842-1851 NN denotes formation
T1116 1852-1854 IN denotes in
T1117 1855-1858 DT denotes the
T1118 1859-1864 NN denotes ERGIC
T1119 1865-1867 IN denotes en
T1120 1868-1873 NN denotes route
T1121 1874-1876 TO denotes to
T1122 1877-1880 DT denotes the
T1123 1881-1885 NN denotes cell
T1124 1886-1893 NN denotes surface
T1125 1893-1894 -COMMA- denotes ,
T1126 1895-1899 RB denotes thus
T1127 1900-1910 VBG denotes supporting
T1128 1911-1922 JJ denotes recombinant
T1129 1923-1933 NNS denotes immunogens
T1130 1934-1936 IN denotes as
T1131 1937-1943 NNS denotes models
T1132 1944-1946 IN denotes of
T1133 1947-1952 JJ denotes viral
T1134 1953-1966 NNS denotes glycoproteins
T1135 1968-1972 NNP denotes Fig.
T1136 1973-1974 CD denotes 1
T1137 1975-1988 JJ denotes Compositional
T1138 1989-1997 NN denotes analysis
T1139 1998-2000 IN denotes of
T1140 2001-2005 NNP denotes SARS
T1141 2005-2006 -COMMA- denotes ,
T1142 2007-2011 NNS denotes MERS
T1143 2012-2015 CC denotes and
T1144 2016-2020 NN denotes HKU1
T1145 2021-2028 NNS denotes glycans
T1146 2030-2031 DT denotes a
T1147 2032-2041 JJ denotes Schematic
T1148 2042-2056 NN denotes representation
T1149 2057-2059 IN denotes of
T1150 2060-2064 NNP denotes SARS
T1151 2064-2065 -COMMA- denotes ,
T1152 2066-2070 NNS denotes MERS
T1153 2071-2074 CC denotes and
T1154 2075-2079 NN denotes HKU1
T1155 2080-2091 NN denotes coronavirus
T1156 2092-2093 NN denotes S
T1157 2094-2107 NNS denotes glycoproteins
T1158 2107-2108 -COMMA- denotes ,
T1159 2109-2116 VBG denotes showing
T1160 2117-2120 DT denotes the
T1161 2121-2130 NNS denotes positions
T1162 2131-2133 IN denotes of
T1163 2134-2142 JJ denotes N-linked
T1164 2143-2156 NN denotes glycosylation
T1165 2157-2167 JJ denotes amino-acid
T1166 2168-2175 NNS denotes sequons
T1167 2176-2177 -LRB- denotes (
T1168 2177-2182 NN denotes NXS/T
T1169 2182-2183 -COMMA- denotes ,
T1170 2184-2189 WRB denotes where
T1171 2190-2195 NN denotes X ≠ P
T1172 2195-2196 -RRB- denotes )
T1173 2197-2202 VBN denotes shown
T1174 2203-2205 IN denotes as
T1175 2206-2214 NNS denotes branches
T1177 2756-2773 JJ denotes Oligomannose-type
T1178 2774-2781 NNS denotes glycans
T1179 2782-2785 VBP denotes are
T1180 2786-2799 RB denotes schematically
T1181 2800-2809 VBN denotes annotated
T1182 2810-2814 IN denotes with
T1183 2815-2822 NN denotes mannose
T1184 2823-2831 NNS denotes residues
T1185 2832-2834 IN denotes as
T1186 2835-2840 JJ denotes green
T1187 2841-2848 NNS denotes circles
T1188 2849-2852 CC denotes and
T1189 2853-2859 NN denotes GlcNAc
T1190 2860-2868 NNS denotes residues
T1191 2869-2871 IN denotes as
T1192 2872-2876 JJ denotes blue
T1193 2877-2884 NNS denotes squares
T1194 2886-2888 TO denotes To
T1195 2889-2898 VB denotes ascertain
T1196 2899-2902 DT denotes the
T1197 2903-2910 JJ denotes precise
T1198 2911-2921 NNS denotes structures
T1199 2922-2924 IN denotes of
T1200 2925-2933 JJ denotes N-linked
T1201 2934-2941 NNS denotes glycans
T1202 2941-2942 -COMMA- denotes ,
T1203 2943-2949 NN denotes glycan
T1204 2950-2955 NNS denotes pools
T1205 2956-2958 IN denotes of
T1206 2959-2963 DT denotes each
T1207 2964-2975 NN denotes coronavirus
T1208 2976-2977 NN denotes S
T1209 2978-2985 NN denotes protein
T1210 2986-2990 VBD denotes were
T1211 2991-2999 VBN denotes analysed
T1212 3000-3002 IN denotes by
T1213 3003-3015 JJ denotes negative-ion
T1214 3016-3041 NN denotes ion-mobility-electrospray
T1215 3042-3052 NN denotes ionisation
T1216 3053-3057 NN denotes mass
T1217 3058-3070 NN denotes spectrometry
T1218 3071-3072 -LRB- denotes (
T1219 3072-3078 NN denotes IM-ESI
T1220 3079-3081 NN denotes MS
T1221 3081-3082 -RRB- denotes )
T1222 3083-3084 -LRB- denotes (
T1223 3084-3097 JJ denotes Supplementary
T1224 3098-3104 NN denotes Fig. 1
T1225 3104-3105 -RRB- denotes )
T1226 3107-3117 JJ denotes Consistent
T1227 3118-3122 IN denotes with
T1228 3123-3126 DT denotes the
T1229 3127-3131 NN denotes UPLC
T1230 3132-3136 NNS denotes data
T1231 3136-3137 -COMMA- denotes ,
T1232 3138-3144 NNP denotes IM-ESI
T1233 3145-3147 NNP denotes MS
T1234 3148-3157 VBD denotes confirmed
T1235 3158-3160 DT denotes an
T1236 3161-3166 NN denotes array
T1237 3167-3169 IN denotes of
T1238 3170-3182 JJ denotes complex-type
T1239 3183-3190 NNS denotes glycans
T1240 3191-3198 VBG denotes ranging
T1241 3199-3203 IN denotes from
T1242 3204-3209 NN denotes mono-
T1243 3210-3212 TO denotes to
T1244 3213-3228 JJ denotes tetra-antennary
T1245 3228-3229 -COMMA- denotes ,
T1246 3230-3233 CC denotes but
T1247 3234-3238 RB denotes also
T1248 3239-3252 NN denotes oligomannose-
T1249 3253-3256 CC denotes and
T1250 3257-3268 JJ denotes hybrid-type
T1251 3269-3276 NNS denotes glycans
T1252 3278-3281 DT denotes The
T1253 3282-3288 NN denotes glycan
T1254 3289-3301 NNS denotes compositions
T1255 3302-3315 VBN denotes characterised
T1256 3316-3318 IN denotes in
T1257 3319-3322 DT denotes the
T1258 3323-3330 NNS denotes spectra
T1259 3331-3335 VBD denotes were
T1260 3336-3343 RB denotes largely
T1261 3344-3353 JJ denotes invariant
T1262 3354-3359 IN denotes among
T1263 3360-3363 DT denotes the
T1264 3364-3377 NNS denotes coronaviruses
T1265 3378-3382 IN denotes with
T1266 3383-3385 DT denotes no
T1267 3386-3391 JJ denotes major
T1268 3392-3402 JJ denotes structural
T1269 3403-3414 NNS denotes differences
T1270 3415-3423 VBN denotes observed
R830 T829 T828 arg1Of processing,Glycan
R831 T829 T830 arg1Of processing,of
R832 T833 T830 arg2Of and,of
R833 T832 T831 arg1Of SARS,trimeric
R834 T832 T833 arg1Of SARS,and
R835 T836 T833 arg2Of proteins,and
R836 T836 T834 arg1Of proteins,MERS
R837 T836 T835 arg1Of proteins,spike
R838 T838 T837 arg1Of generate,To
R839 T849 T837 modOf used,To
R840 T848 T838 arg1Of we,generate
R841 T841 T838 arg2Of mimic,generate
R842 T841 T839 arg1Of mimic,a
R843 T841 T840 arg1Of mimic,soluble
R844 T841 T842 arg1Of mimic,of
R845 T846 T842 arg2Of proteins,of
R846 T846 T843 arg1Of proteins,the
R847 T846 T844 arg1Of proteins,viral
R848 T846 T845 arg1Of proteins,S
R849 T849 T847 arg1Of used,","
R850 T848 T849 arg1Of we,used
R851 T854 T849 arg2Of and,used
R852 T853 T850 arg1Of SARS,the
R853 T853 T851 arg1Of SARS,2P-stabilised
R854 T853 T852 arg1Of SARS,native-like
R855 T853 T854 arg1Of SARS,and
R856 T858 T854 arg2Of antigens,and
R857 T858 T855 arg1Of antigens,MERS
R858 T858 T856 arg1Of antigens,S
R859 T858 T857 arg1Of antigens,protein
R860 T868 T859 arg1Of described,","
R861 T862 T860 arg1Of and,the
R862 T861 T862 arg1Of design,and
R863 T863 T862 arg2Of structures,and
R864 T862 T864 arg1Of and,of
R865 T858 T864 arg2Of antigens,of
R866 T858 T865 arg1Of antigens,which
R867 T862 T866 arg1Of and,have
R868 T868 T866 arg2Of described,have
R869 T862 T867 arg1Of and,been
R870 T868 T867 arg2Of described,been
R871 T873 T868 arg1Of al.41,described
R872 T862 T868 arg2Of and,described
R873 T868 T869 arg1Of described,previously
R874 T873 T870 arg2Of al.41,by
R875 T872 T871 arg1Of et,Pallesen
R876 T873 T872 arg1Of al.41,et
R877 T874 T875 arg1Of SARS,","
R878 T876 T875 arg2Of MERS,","
R879 T875 T877 arg1Of ",",and
R880 T880 T877 arg2Of genes,and
R881 T880 T878 arg1Of genes,HKU1
R882 T880 T879 arg1Of genes,S
R883 T877 T881 arg1Of and,encode
R884 T886 T881 arg2Of ;,encode
R885 T885 T882 arg1Of sequons,many
R886 T885 T883 arg1Of sequons,N-linked
R887 T885 T884 arg1Of sequons,glycan
R888 T885 T886 arg1Of sequons,;
R889 T890 T886 arg2Of and,;
R890 T887 T888 arg1Of 23,","
R891 T889 T888 arg2Of 23,","
R892 T888 T890 arg1Of ",",and
R893 T891 T890 arg2Of 29,and
R894 T886 T892 arg1Of ;,","
R895 T886 T893 arg1Of ;,respectively
R896 T886 T894 arg1Of ;,(
R897 T895 T894 arg2Of Fig. 1a,(
R898 T896 T894 arg3Of ),(
R899 T899 T898 arg1Of sought,initially
R900 T897 T899 arg1Of We,sought
R901 T902 T899 arg2Of assess,sought
R902 T902 T900 arg1Of assess,to
R903 T902 T901 arg1Of assess,quantitatively
R904 T897 T902 arg1Of We,assess
R905 T904 T902 arg2Of composition,assess
R906 T904 T903 arg1Of composition,the
R907 T904 T905 arg1Of composition,of
R908 T907 T905 arg2Of carbohydrate,of
R909 T907 T906 arg1Of carbohydrate,the
R910 T908 T909 arg1Of structures,displayed
R911 T904 T909 arg2Of composition,displayed
R912 T909 T910 arg1Of displayed,on
R913 T913 T910 arg2Of glycoproteins,on
R914 T913 T911 arg1Of glycoproteins,the
R915 T913 T912 arg1Of glycoproteins,S
R916 T915 T914 arg2Of glycans,N-linked
R917 T915 T916 arg1Of glycans,were
R918 T919 T916 arg2Of ",",were
R919 T919 T917 arg1Of ",",enzymatically
R920 T915 T918 arg2Of glycans,released
R921 T918 T919 arg1Of released,","
R922 T923 T919 arg2Of and,","
R923 T923 T920 arg1Of and,fluorescently
R924 T915 T921 arg2Of glycans,labelled
R925 T923 T922 arg1Of and,","
R926 T921 T923 arg1Of labelled,and
R927 T924 T923 arg2Of subjected,and
R928 T915 T924 arg2Of glycans,subjected
R929 T924 T925 arg1Of subjected,to
R930 T930 T925 arg2Of chromatography,to
R931 T930 T926 arg1Of chromatography,hydrophilic
R932 T930 T927 arg1Of chromatography,interaction
R933 T930 T928 arg1Of chromatography,chromatography-ultra-performance
R934 T930 T929 arg1Of chromatography,liquid
R935 T930 T931 arg1Of chromatography,(
R936 T932 T931 arg2Of HILIC-UPLC,(
R937 T933 T931 arg3Of ),(
R938 T934 T935 arg1Of Treatment,with
R939 T937 T935 arg2Of H,with
R940 T937 T936 arg1Of H,endoglycosidase
R941 T937 T938 arg1Of H,(
R942 T940 T938 arg2Of H,(
R943 T941 T938 arg3Of ),(
R944 T940 T939 arg1Of H,Endo
R945 T934 T942 arg1Of Treatment,revealed
R946 T944 T942 arg2Of population,revealed
R947 T944 T943 arg1Of population,a
R948 T944 T945 arg1Of population,(
R949 T948 T945 arg2Of %,(
R950 T957 T945 arg3Of ),(
R951 T948 T946 arg1Of %,SARS
R952 T948 T947 arg1Of %,32.2
R953 T948 T949 arg1Of %,;
R954 T952 T949 arg2Of %,;
R955 T952 T950 arg1Of %,MERS
R956 T952 T951 arg1Of %,33.8
R957 T948 T953 arg1Of %,","
R958 T956 T953 arg2Of %,","
R959 T956 T954 arg1Of %,HKU1
R960 T956 T955 arg1Of %,25.0
R961 T944 T958 arg1Of population,of
R962 T961 T958 arg2Of glycans,of
R963 T961 T959 arg2Of glycans,underprocessed
R964 T961 T960 arg1Of glycans,oligomannose-type
R965 T961 T962 arg1Of glycans,(
R966 T963 T962 arg2Of Fig. 1b,(
R967 T964 T962 arg3Of ),(
R968 T966 T965 arg1Of observation,This
R969 T966 T967 arg1Of observation,of
R970 T972 T967 arg2Of glycans,of
R971 T972 T968 arg1Of glycans,both
R972 T972 T969 arg1Of glycans,complex
R973 T969 T970 arg1Of complex,and
R974 T971 T970 arg2Of oligomannose-type,and
R975 T972 T971 arg1Of glycans,oligomannose-type
R976 T966 T973 arg1Of observation,reveals
R977 T982 T973 arg2Of processed,reveals
R978 T982 T974 arg1Of processed,that
R979 T976 T975 arg1Of majority,the
R980 T976 T977 arg1Of majority,of
R981 T979 T977 arg2Of glycans,of
R982 T979 T978 arg1Of glycans,N-linked
R983 T976 T980 arg1Of majority,can
R984 T982 T980 arg2Of processed,can
R985 T976 T981 arg1Of majority,be
R986 T982 T981 arg2Of processed,be
R987 T976 T982 arg2Of majority,processed
R988 T982 T983 arg1Of processed,","
R989 T982 T984 arg1Of processed,although
R990 T986 T984 arg2Of is,although
R991 T985 T986 arg1Of there,is
R992 T988 T986 arg2Of processing,is
R993 T988 T987 arg1Of processing,limited
R994 T988 T989 arg1Of processing,at
R995 T991 T989 arg2Of sites,at
R996 T991 T990 arg1Of sites,specific
R997 T991 T992 arg1Of sites,across
R998 T995 T992 arg2Of proteins,across
R999 T995 T993 arg1Of proteins,the
R1000 T995 T994 arg1Of proteins,S
R1001 T1001 T996 arg1Of note,It
R1002 T1001 T997 arg1Of note,is
R1003 T999 T997 arg2Of interesting,is
R1004 T997 T998 arg1Of is,also
R1005 T1001 T999 arg1Of note,interesting
R1006 T1001 T1000 arg1Of note,to
R1007 T1008 T1001 arg2Of was,note
R1008 T1008 T1002 arg1Of was,that
R1009 T1004 T1003 arg1Of distribution,the
R1010 T1004 T1005 arg1Of distribution,of
R1011 T1007 T1005 arg2Of glycans,of
R1012 T1007 T1006 arg1Of glycans,oligomannose-type
R1013 T1004 T1008 arg1Of distribution,was
R1014 T1009 T1008 arg2Of broad,was
R1015 T1004 T1009 arg1Of distribution,broad
R1016 T1017 T1009 arg2Of present,broad
R1017 T1009 T1010 arg1Of broad,","
R1018 T1009 T1011 arg1Of broad,with
R1019 T1012 T1011 arg2Of Man5GlcNAc2,with
R1020 T1014 T1013 arg1Of Man9GlcNAc2,to
R1021 T1015 T1014 arg2Of glycans,Man9GlcNAc2
R1022 T1017 T1016 arg1Of present,all
R1023 T1014 T1017 arg1Of Man9GlcNAc2,present
R1024 T1017 T1018 arg1Of present,","
R1025 T1017 T1019 arg1Of present,without
R1026 T1023 T1019 arg2Of peak,without
R1027 T1023 T1020 arg1Of peak,one
R1028 T1023 T1021 arg1Of peak,particular
R1029 T1023 T1022 arg1Of peak,dominant
R1030 T1017 T1024 arg1Of present,","
R1031 T1017 T1025 arg1Of present,as
R1032 T1026 T1025 arg2Of is,as
R1033 T1028 T1026 arg1Of case,is
R1034 T1028 T1027 arg1Of case,the
R1035 T1028 T1029 arg1Of case,for
R1036 T1032 T1029 arg2Of glycoproteins,for
R1037 T1032 T1030 arg1Of glycoproteins,some
R1038 T1032 T1031 arg1Of glycoproteins,viral
R1039 T1032 T1033 arg1Of glycoproteins,","
R1040 T1035 T1034 arg1Of as,such
R1041 T1032 T1035 arg1Of glycoproteins,as
R1042 T1037 T1035 arg2Of Env36,as
R1043 T1037 T1036 arg1Of Env36,HIV-1
R1044 T1039 T1038 arg1Of proportion,The
R1045 T1039 T1040 arg1Of proportion,of
R1046 T1042 T1040 arg2Of glycans,of
R1047 T1042 T1041 arg1Of glycans,oligomannose-type
R1048 T1039 T1043 arg1Of proportion,on
R1049 T1047 T1043 arg2Of proteins,on
R1050 T1047 T1044 arg1Of proteins,recombinant
R1051 T1047 T1045 arg1Of proteins,coronavirus
R1052 T1047 T1046 arg1Of proteins,S
R1053 T1039 T1048 arg1Of proportion,is
R1054 T1049 T1048 arg2Of consistent,is
R1055 T1039 T1049 arg1Of proportion,consistent
R1056 T1049 T1050 arg1Of consistent,with
R1057 T1052 T1050 arg2Of studies,with
R1058 T1052 T1051 arg1Of studies,previous
R1059 T1052 T1053 arg2Of studies,performed
R1060 T1053 T1054 arg1Of performed,on
R1061 T1058 T1054 arg2Of and,on
R1062 T1056 T1055 arg1Of derived,virally
R1063 T1057 T1056 arg1Of MERS,derived
R1064 T1057 T1058 arg1Of MERS,and
R1065 T1062 T1058 arg2Of "proteins17,42",and
R1066 T1062 T1059 arg1Of "proteins17,42",SARS
R1067 T1062 T1060 arg1Of "proteins17,42",coronavirus
R1068 T1062 T1061 arg1Of "proteins17,42",S
R1069 T1063 T1064 arg1Of Coronaviruses,have
R1070 T1068 T1064 arg2Of reported,have
R1071 T1063 T1065 arg1Of Coronaviruses,been
R1072 T1068 T1065 arg2Of reported,been
R1073 T1068 T1066 arg1Of reported,previously
R1074 T1063 T1067 arg1Of Coronaviruses,been
R1075 T1068 T1067 arg2Of reported,been
R1076 T1063 T1068 arg2Of Coronaviruses,reported
R1077 T1070 T1068 arg3Of form,reported
R1078 T1070 T1069 arg1Of form,to
R1079 T1063 T1070 arg1Of Coronaviruses,form
R1080 T1071 T1070 arg2Of virions,form
R1081 T1070 T1072 arg1Of form,by
R1082 T1073 T1072 arg2Of budding,by
R1083 T1063 T1073 arg1Of Coronaviruses,budding
R1084 T1073 T1074 arg1Of budding,into
R1085 T1076 T1074 arg2Of lumen,into
R1086 T1076 T1075 arg1Of lumen,the
R1087 T1076 T1077 arg1Of lumen,of
R1088 T1081 T1077 arg2Of compartments,of
R1089 T1081 T1078 arg1Of compartments,endoplasmic
R1090 T1081 T1079 arg1Of compartments,reticulum-Golgi
R1091 T1081 T1080 arg1Of compartments,intermediate
R1092 T1081 T1082 arg1Of compartments,(
R1093 T1083 T1082 arg2Of ERGIC,(
R1094 T1084 T1082 arg3Of ),(
R1095 T1081 T1085 arg1Of compartments,"43,44"
R1096 T1086 T1087 arg1Of Observations,of
R1097 T1089 T1087 arg2Of and,of
R1098 T1088 T1089 arg1Of hybrid-,and
R1099 T1091 T1089 arg2Of glycans,and
R1100 T1091 T1090 arg1Of glycans,complex-type
R1101 T1089 T1092 arg1Of and,on
R1102 T1095 T1092 arg2Of "material17,42",on
R1103 T1094 T1093 arg1Of derived,virally
R1104 T1095 T1094 arg1Of "material17,42",derived
R1105 T1086 T1096 arg1Of Observations,would
R1106 T1100 T1099 arg2Of suggest,","
R1107 T1086 T1100 arg1Of Observations,suggest
R1108 T1103 T1100 arg2Of is,suggest
R1109 T1103 T1101 arg1Of is,that
R1110 T1102 T1103 arg1Of it,is
R1111 T1104 T1103 arg2Of likely,is
R1112 T1102 T1104 arg1Of it,likely
R1113 T1108 T1104 arg2Of travel,likely
R1114 T1108 T1105 arg1Of travel,that
R1115 T1107 T1106 arg1Of virions,coronavirus
R1116 T1107 T1108 arg1Of virions,travel
R1117 T1108 T1109 arg1Of travel,through
R1118 T1112 T1109 arg2Of apparatus,through
R1119 T1112 T1110 arg1Of apparatus,the
R1120 T1112 T1111 arg1Of apparatus,Golgi
R1121 T1112 T1113 arg1Of apparatus,after
R1122 T1115 T1113 arg2Of formation,after
R1123 T1115 T1114 arg1Of formation,virion
R1124 T1115 T1116 arg1Of formation,in
R1125 T1118 T1116 arg2Of ERGIC,in
R1126 T1118 T1117 arg1Of ERGIC,the
R1127 T1118 T1119 arg1Of ERGIC,en
R1128 T1120 T1119 arg2Of route,en
R1129 T1118 T1121 arg1Of ERGIC,to
R1130 T1124 T1121 arg2Of surface,to
R1131 T1124 T1122 arg1Of surface,the
R1132 T1124 T1123 arg1Of surface,cell
R1133 T1103 T1125 arg1Of is,","
R1134 T1127 T1126 arg1Of supporting,thus
R1135 T1102 T1127 arg1Of it,supporting
R1136 T1129 T1127 arg2Of immunogens,supporting
R1137 T1103 T1127 modOf is,supporting
R1138 T1129 T1128 arg1Of immunogens,recombinant
R1139 T1127 T1130 arg1Of supporting,as
R1140 T1131 T1130 arg2Of models,as
R1141 T1131 T1132 arg1Of models,of
R1142 T1134 T1132 arg2Of glycoproteins,of
R1143 T1134 T1133 arg1Of glycoproteins,viral
R1144 T1138 T1135 arg1Of analysis,Fig.
R1145 T1135 T1136 arg1Of Fig.,1
R1146 T1138 T1137 arg1Of analysis,Compositional
R1147 T1138 T1139 arg1Of analysis,of
R1148 T1140 T1139 arg2Of SARS,of
R1149 T1140 T1141 arg1Of SARS,","
R1150 T1143 T1141 arg2Of and,","
R1151 T1142 T1143 arg1Of MERS,and
R1152 T1145 T1143 arg2Of glycans,and
R1153 T1145 T1144 arg1Of glycans,HKU1
R1154 T1148 T1146 arg1Of representation,a
R1155 T1148 T1147 arg1Of representation,Schematic
R1156 T1148 T1149 arg1Of representation,of
R1157 T1153 T1149 arg2Of and,of
R1158 T1150 T1151 arg1Of SARS,","
R1159 T1152 T1151 arg2Of MERS,","
R1160 T1151 T1153 arg1Of ",",and
R1161 T1157 T1153 arg2Of glycoproteins,and
R1162 T1157 T1154 arg1Of glycoproteins,HKU1
R1163 T1157 T1155 arg1Of glycoproteins,coronavirus
R1164 T1157 T1156 arg1Of glycoproteins,S
R1165 T1148 T1158 arg1Of representation,","
R1166 T1148 T1159 arg1Of representation,showing
R1167 T1161 T1159 arg2Of positions,showing
R1168 T1161 T1160 arg1Of positions,the
R1169 T1161 T1162 arg1Of positions,of
R1170 T1166 T1162 arg2Of sequons,of
R1171 T1166 T1163 arg1Of sequons,N-linked
R1172 T1166 T1164 arg1Of sequons,glycosylation
R1173 T1166 T1165 arg1Of sequons,amino-acid
R1174 T1166 T1167 arg1Of sequons,(
R1175 T1168 T1167 arg2Of NXS/T,(
R1176 T1172 T1167 arg3Of ),(
R1177 T1168 T1169 arg1Of NXS/T,","
R1178 T1171 T1170 arg1Of X ≠ P,where
R1179 T1168 T1171 arg1Of NXS/T,X ≠ P
R1180 T1166 T1173 arg2Of sequons,shown
R1181 T1173 T1174 arg1Of shown,as
R1182 T1175 T1174 arg2Of branches,as
R1183 T1178 T1177 arg1Of glycans,Oligomannose-type
R1184 T1178 T1179 arg1Of glycans,are
R1185 T1181 T1179 arg2Of annotated,are
R1186 T1181 T1180 arg1Of annotated,schematically
R1187 T1178 T1181 arg2Of glycans,annotated
R1188 T1181 T1182 arg1Of annotated,with
R1189 T1184 T1182 arg2Of residues,with
R1190 T1184 T1183 arg1Of residues,mannose
R1191 T1181 T1185 arg1Of annotated,as
R1192 T1188 T1185 arg2Of and,as
R1193 T1187 T1186 arg1Of circles,green
R1194 T1187 T1188 arg1Of circles,and
R1195 T1190 T1188 arg2Of residues,and
R1196 T1190 T1189 arg1Of residues,GlcNAc
R1197 T1181 T1191 arg1Of annotated,as
R1198 T1193 T1191 arg2Of squares,as
R1199 T1193 T1192 arg1Of squares,blue
R1200 T1195 T1194 arg1Of ascertain,To
R1201 T1211 T1194 modOf analysed,To
R1202 T1198 T1195 arg2Of structures,ascertain
R1203 T1198 T1196 arg1Of structures,the
R1204 T1198 T1197 arg1Of structures,precise
R1205 T1198 T1199 arg1Of structures,of
R1206 T1201 T1199 arg2Of glycans,of
R1207 T1201 T1200 arg1Of glycans,N-linked
R1208 T1211 T1202 arg1Of analysed,","
R1209 T1204 T1203 arg1Of pools,glycan
R1210 T1204 T1205 arg1Of pools,of
R1211 T1209 T1205 arg2Of protein,of
R1212 T1209 T1206 arg1Of protein,each
R1213 T1209 T1207 arg1Of protein,coronavirus
R1214 T1209 T1208 arg1Of protein,S
R1215 T1204 T1210 arg1Of pools,were
R1216 T1211 T1210 arg2Of analysed,were
R1217 T1217 T1211 arg1Of spectrometry,analysed
R1218 T1204 T1211 arg2Of pools,analysed
R1219 T1217 T1212 arg2Of spectrometry,by
R1220 T1217 T1213 arg1Of spectrometry,negative-ion
R1221 T1217 T1214 arg1Of spectrometry,ion-mobility-electrospray
R1222 T1217 T1215 arg1Of spectrometry,ionisation
R1223 T1217 T1216 arg1Of spectrometry,mass
R1224 T1217 T1218 arg1Of spectrometry,(
R1225 T1220 T1218 arg2Of MS,(
R1226 T1221 T1218 arg3Of ),(
R1227 T1220 T1219 arg1Of MS,IM-ESI
R1228 T1217 T1222 arg1Of spectrometry,(
R1229 T1224 T1222 arg2Of Fig. 1,(
R1230 T1225 T1222 arg3Of ),(
R1231 T1224 T1223 arg1Of Fig. 1,Supplementary
R1232 T1234 T1226 arg1Of confirmed,Consistent
R1233 T1226 T1227 arg1Of Consistent,with
R1234 T1230 T1227 arg2Of data,with
R1235 T1230 T1228 arg1Of data,the
R1236 T1230 T1229 arg1Of data,UPLC
R1237 T1234 T1231 arg1Of confirmed,","
R1238 T1233 T1232 arg1Of MS,IM-ESI
R1239 T1233 T1234 arg1Of MS,confirmed
R1240 T1236 T1234 arg2Of array,confirmed
R1241 T1236 T1235 arg1Of array,an
R1242 T1236 T1237 arg1Of array,of
R1243 T1239 T1237 arg2Of glycans,of
R1244 T1239 T1238 arg1Of glycans,complex-type
R1245 T1239 T1240 arg1Of glycans,ranging
R1246 T1240 T1241 arg1Of ranging,from
R1247 T1242 T1241 arg2Of mono-,from
R1248 T1242 T1243 arg1Of mono-,to
R1249 T1246 T1243 arg2Of but,to
R1250 T1246 T1245 arg1Of but,","
R1251 T1244 T1246 arg1Of tetra-antennary,but
R1252 T1249 T1246 arg2Of and,but
R1253 T1246 T1247 arg1Of but,also
R1254 T1248 T1249 arg1Of oligomannose-,and
R1255 T1251 T1249 arg2Of glycans,and
R1256 T1251 T1250 arg1Of glycans,hybrid-type
R1257 T1254 T1252 arg1Of compositions,The
R1258 T1254 T1253 arg1Of compositions,glycan
R1259 T1254 T1255 arg2Of compositions,characterised
R1260 T1255 T1256 arg1Of characterised,in
R1261 T1258 T1256 arg2Of spectra,in
R1262 T1258 T1257 arg1Of spectra,the
R1263 T1254 T1259 arg1Of compositions,were
R1264 T1261 T1259 arg2Of invariant,were
R1265 T1261 T1260 arg1Of invariant,largely
R1266 T1254 T1261 arg1Of compositions,invariant
R1267 T1261 T1262 arg1Of invariant,among
R1268 T1264 T1262 arg2Of coronaviruses,among
R1269 T1264 T1263 arg1Of coronaviruses,the
R1270 T1264 T1265 arg1Of coronaviruses,with
R1271 T1269 T1265 arg2Of differences,with
R1272 T1269 T1266 arg1Of differences,no
R1273 T1269 T1267 arg1Of differences,major
R1274 T1269 T1268 arg1Of differences,structural
R1275 T1269 T1270 arg2Of differences,observed

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T35 50-58 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T36 102-110 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T37 166-173 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T38 444-456 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T39 487-500 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T40 1033-1041 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T41 1257-1270 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T42 1280-1283 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T43 1366-1374 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T44 1568-1598 Body_part denotes lumen of endoplasmic reticulum http://purl.org/sig/ont/fma/fma84806
T45 1618-1630 Body_part denotes compartments http://purl.org/sig/ont/fma/fma76577
T46 1813-1828 Body_part denotes Golgi apparatus http://purl.org/sig/ont/fma/fma63843
T47 1881-1893 Body_part denotes cell surface http://purl.org/sig/ont/fma/fma67653
T48 1881-1885 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T49 1953-1966 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T50 2094-2107 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T51 2157-2167 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T52 2237-2250 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T53 2404-2409 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T54 2815-2822 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T55 2978-2985 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T38 0-6 Chemical denotes Glycan http://purl.obolibrary.org/obo/CHEBI_18154
T39 50-58 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T40 102-110 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T41 166-173 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T42 444-456 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T43 487-500 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T44 511-518 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T45 819-826 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T46 893-900 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T47 939-946 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T48 1033-1041 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T49 1117-1124 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T50 1168-1175 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T51 1257-1270 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T52 1329-1336 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T53 1366-1374 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T54 1686-1693 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T55 1953-1966 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T56 2021-2028 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T57 2094-2107 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T58 2157-2162 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T59 2237-2250 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T60 2355-2362 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T61 2509-2516 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T62 2563-2570 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T63 2632-2639 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T64 2641-2648 Chemical denotes magenta http://purl.obolibrary.org/obo/CHEBI_87661
T65 2774-2781 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T66 2815-2822 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T67 2853-2859 Chemical denotes GlcNAc http://purl.obolibrary.org/obo/CHEBI_506227|http://purl.obolibrary.org/obo/CHEBI_73685
T69 2934-2941 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T70 2978-2985 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T71 3012-3015 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T72 3016-3019 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T73 3183-3190 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T74 3269-3276 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T40 30-34 Species denotes SARS NCBItxid:694009
T41 39-43 Species denotes MERS NCBItxid:1335626
T42 150-154 Species denotes SARS NCBItxid:694009
T43 159-163 Species denotes MERS NCBItxid:1335626
T44 272-276 Species denotes SARS NCBItxid:694009
T45 278-282 Species denotes MERS NCBItxid:1335626
T46 747-751 Species denotes SARS NCBItxid:694009
T47 759-763 Species denotes MERS NCBItxid:1335626
T48 1280-1285 Species denotes HIV-1 NCBItxid:11676
T49 1340-1363 Species denotes recombinant coronavirus NCBItxid:575864
T50 1440-1444 Species denotes MERS NCBItxid:1335626
T51 1449-1465 Species denotes SARS coronavirus NCBItxid:694009
T52 1449-1453 Species denotes SARS NCBItxid:694009
T53 2001-2005 Species denotes SARS NCBItxid:694009
T54 2007-2011 Species denotes MERS NCBItxid:1335626
T55 2060-2064 Species denotes SARS NCBItxid:694009
T56 2066-2070 Species denotes MERS NCBItxid:1335626
T57 2075-2091 Species denotes HKU1 coronavirus NCBItxid:290028
T58 2522-2526 Species denotes SARS NCBItxid:694009
T59 2528-2532 Species denotes MERS NCBItxid:1335626

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T31 0-58 Sentence denotes Glycan processing of trimeric SARS and MERS spike proteins
T32 59-271 Sentence denotes To generate a soluble mimic of the viral S proteins, we used the 2P-stabilised native-like SARS and MERS S protein antigens, the design and structures of which have been described previously by Pallesen et al.41.
T33 272-375 Sentence denotes SARS, MERS and HKU1 S genes encode many N-linked glycan sequons; 23, 23 and 29, respectively (Fig. 1a).
T34 376-501 Sentence denotes We initially sought to quantitatively assess the composition of the carbohydrate structures displayed on the S glycoproteins.
T35 502-681 Sentence denotes N-linked glycans were enzymatically released, fluorescently labelled, and subjected to hydrophilic interaction chromatography-ultra-performance liquid chromatography (HILIC-UPLC).
T36 682-837 Sentence denotes Treatment with endoglycosidase H (Endo H) revealed a population (SARS 32.2%; MERS 33.8%, HKU1 25.0%) of underprocessed oligomannose-type glycans (Fig. 1b).
T37 838-1042 Sentence denotes This observation of both complex and oligomannose-type glycans reveals that the majority of N-linked glycans can be processed, although there is limited processing at specific sites across the S proteins.
T38 1043-1292 Sentence denotes It is also interesting to note that the distribution of oligomannose-type glycans was broad, with Man5GlcNAc2 to Man9GlcNAc2 glycans all present, without one particular dominant peak, as is the case for some viral glycoproteins, such as HIV-1 Env36.
T39 1293-1482 Sentence denotes The proportion of oligomannose-type glycans on recombinant coronavirus S proteins is consistent with previous studies performed on virally derived MERS and SARS coronavirus S proteins17,42.
T40 1483-1644 Sentence denotes Coronaviruses have been previously been reported to form virions by budding into the lumen of endoplasmic reticulum-Golgi intermediate compartments (ERGIC)43,44.
T41 1645-1967 Sentence denotes Observations of hybrid- and complex-type glycans on virally derived material17,42 would, however, suggest that it is likely that coronavirus virions travel through the Golgi apparatus after virion formation in the ERGIC en route to the cell surface, thus supporting recombinant immunogens as models of viral glycoproteins.
T42 1968-2029 Sentence denotes Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.
T43 2030-2215 Sentence denotes a Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches.
T44 2216-2544 Sentence denotes The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S.
T45 2545-2755 Sentence denotes Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart.
T46 2756-2885 Sentence denotes Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares.
T47 2886-3106 Sentence denotes To ascertain the precise structures of N-linked glycans, glycan pools of each coronavirus S protein were analysed by negative-ion ion-mobility-electrospray ionisation mass spectrometry (IM-ESI MS) (Supplementary Fig. 1).
T48 3107-3277 Sentence denotes Consistent with the UPLC data, IM-ESI MS confirmed an array of complex-type glycans ranging from mono- to tetra-antennary, but also oligomannose- and hybrid-type glycans.
T49 3278-3424 Sentence denotes The glycan compositions characterised in the spectra were largely invariant among the coronaviruses with no major structural differences observed.

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 2404-2409 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T23 30-34 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T24 150-154 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T25 272-276 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T26 747-751 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T27 1449-1453 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T28 2001-2005 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T29 2060-2064 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T30 2522-2526 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
199 0-6 Chemical denotes Glycan MESH:D011134
200 30-34 Disease denotes SARS MESH:D045169
201 39-43 Disease denotes MERS MESH:D018352
198 44-49 Gene denotes spike Gene:43740568
291 150-154 Disease denotes SARS MESH:D045169
292 159-163 Disease denotes MERS MESH:D018352
293 272-276 Disease denotes SARS MESH:D045169
294 278-282 Disease denotes MERS MESH:D018352
275 312-327 Chemical denotes N-linked glycan
276 444-456 Chemical denotes carbohydrate MESH:D002241
277 502-518 Chemical denotes N-linked glycans
295 697-714 Disease denotes endoglycosidase H MESH:D000848
296 747-751 Disease denotes SARS MESH:D045169
297 759-763 Disease denotes MERS MESH:D018352
278 801-813 Chemical denotes oligomannose
279 819-826 Chemical denotes glycans MESH:D011134
280 875-887 Chemical denotes oligomannose
281 893-900 Chemical denotes glycans MESH:D011134
282 930-946 Chemical denotes N-linked glycans
283 1099-1111 Chemical denotes oligomannose
284 1117-1124 Chemical denotes glycans MESH:D011134
285 1141-1152 Chemical denotes Man5GlcNAc2 MESH:C058642
286 1156-1167 Chemical denotes Man9GlcNAc2 MESH:C475461
287 1168-1175 Chemical denotes glycans MESH:D011134
270 1280-1285 Species denotes HIV-1 Tax:11676
269 1286-1289 Gene denotes Env Gene:64006
288 1311-1323 Chemical denotes oligomannose
289 1329-1336 Chemical denotes glycans MESH:D011134
271 1340-1363 Species denotes recombinant coronavirus Tax:575864
298 1440-1444 Disease denotes MERS MESH:D018352
299 1449-1476 Disease denotes SARS coronavirus S proteins MESH:D018455
272 1483-1496 Species denotes Coronaviruses Tax:11118
290 1686-1693 Chemical denotes glycans MESH:D011134
273 1774-1785 Species denotes coronavirus Tax:11118
274 1911-1922 Species denotes recombinant Tax:575864
206 2001-2005 Disease denotes SARS MESH:D045169
207 2007-2011 Disease denotes MERS MESH:D018352
205 2021-2028 Chemical denotes glycans MESH:D011134
234 2060-2064 Disease denotes SARS MESH:D045169
235 2066-2070 Disease denotes MERS MESH:D018352
223 2080-2091 Species denotes coronavirus Tax:11118
224 2500-2516 Chemical denotes N-linked glycans
236 2522-2526 Disease denotes SARS MESH:D045169
237 2528-2532 Disease denotes MERS MESH:D018352
225 2545-2557 Chemical denotes Oligomannose
226 2563-2570 Chemical denotes glycans MESH:D011134
227 2582-2605 Chemical denotes Man5GlcNAc2–Man9GlcNAc2
228 2632-2639 Chemical denotes glycans MESH:D011134
229 2716-2722 Chemical denotes glycan MESH:D011134
230 2756-2768 Chemical denotes Oligomannose
231 2774-2781 Chemical denotes glycans MESH:D011134
232 2815-2822 Chemical denotes mannose MESH:D008358
233 2853-2859 Chemical denotes GlcNAc MESH:D000117
310 2925-2941 Chemical denotes N-linked glycans
311 2943-2949 Chemical denotes glycan MESH:D011134
308 2964-2975 Species denotes coronavirus Tax:11118
312 3183-3190 Chemical denotes glycans MESH:D011134
313 3239-3251 Chemical denotes oligomannose
314 3269-3276 Chemical denotes glycans MESH:D011134
315 3282-3288 Chemical denotes glycan MESH:D011134
309 3364-3377 Species denotes coronaviruses Tax:11118

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1972 44-58 Protein denotes spike proteins https://www.uniprot.org/uniprot/P31340
T1973 100-110 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T2006 164-173 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T2039 485-500 Protein denotes S glycoproteins https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T2138 1031-1041 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T2171 1257-1270 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T2256 1364-1374 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T2289 1953-1966 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T2374 2092-2107 Protein denotes S glycoproteins https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T2473 2235-2250 Protein denotes S glycoproteins https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T2572 2318-2321 Protein denotes RBD https://www.uniprot.org/uniprot/Q63492|https://www.uniprot.org/uniprot/Q63491|https://www.uniprot.org/uniprot/Q62815|https://www.uniprot.org/uniprot/Q62691|https://www.uniprot.org/uniprot/Q01542|https://www.uniprot.org/uniprot/P27732|https://www.uniprot.org/uniprot/O09024|https://www.uniprot.org/uniprot/O09023|https://www.uniprot.org/uniprot/O09022
T2581 2976-2985 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T2614 3075-3078 Protein denotes ESI https://www.uniprot.org/uniprot/Q6FG74|https://www.uniprot.org/uniprot/P19957|https://www.uniprot.org/uniprot/E1P618
T2617 3141-3144 Protein denotes ESI https://www.uniprot.org/uniprot/Q6FG74|https://www.uniprot.org/uniprot/P19957|https://www.uniprot.org/uniprot/E1P618

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T21 1540-1558 http://purl.obolibrary.org/obo/GO_0046755 denotes virions by budding
T22 1551-1558 http://purl.obolibrary.org/obo/GO_0007114 denotes budding
T23 1842-1851 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T24 2143-2156 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T25 2676-2685 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T18 1540-1558 http://purl.obolibrary.org/obo/GO_0046755 denotes virions by budding
T19 1551-1558 http://purl.obolibrary.org/obo/GO_0007114 denotes budding
T20 1842-1851 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T21 2143-2156 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T22 2676-2685 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T20 1540-1558 http://purl.obolibrary.org/obo/GO_0046755 denotes virions by budding
T21 1551-1558 http://purl.obolibrary.org/obo/GO_0007114 denotes budding
T22 1842-1851 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T23 2134-2156 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T24 2143-2156 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T25 2676-2685 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T31 0-58 Sentence denotes Glycan processing of trimeric SARS and MERS spike proteins
T32 59-271 Sentence denotes To generate a soluble mimic of the viral S proteins, we used the 2P-stabilised native-like SARS and MERS S protein antigens, the design and structures of which have been described previously by Pallesen et al.41.
T33 272-375 Sentence denotes SARS, MERS and HKU1 S genes encode many N-linked glycan sequons; 23, 23 and 29, respectively (Fig. 1a).
T34 376-501 Sentence denotes We initially sought to quantitatively assess the composition of the carbohydrate structures displayed on the S glycoproteins.
T35 502-681 Sentence denotes N-linked glycans were enzymatically released, fluorescently labelled, and subjected to hydrophilic interaction chromatography-ultra-performance liquid chromatography (HILIC-UPLC).
T36 682-837 Sentence denotes Treatment with endoglycosidase H (Endo H) revealed a population (SARS 32.2%; MERS 33.8%, HKU1 25.0%) of underprocessed oligomannose-type glycans (Fig. 1b).
T37 838-1042 Sentence denotes This observation of both complex and oligomannose-type glycans reveals that the majority of N-linked glycans can be processed, although there is limited processing at specific sites across the S proteins.
T38 1043-1292 Sentence denotes It is also interesting to note that the distribution of oligomannose-type glycans was broad, with Man5GlcNAc2 to Man9GlcNAc2 glycans all present, without one particular dominant peak, as is the case for some viral glycoproteins, such as HIV-1 Env36.
T39 1293-1482 Sentence denotes The proportion of oligomannose-type glycans on recombinant coronavirus S proteins is consistent with previous studies performed on virally derived MERS and SARS coronavirus S proteins17,42.
T40 1483-1644 Sentence denotes Coronaviruses have been previously been reported to form virions by budding into the lumen of endoplasmic reticulum-Golgi intermediate compartments (ERGIC)43,44.
T41 1645-1967 Sentence denotes Observations of hybrid- and complex-type glycans on virally derived material17,42 would, however, suggest that it is likely that coronavirus virions travel through the Golgi apparatus after virion formation in the ERGIC en route to the cell surface, thus supporting recombinant immunogens as models of viral glycoproteins.
T42 1968-2029 Sentence denotes Fig. 1 Compositional analysis of SARS, MERS and HKU1 glycans.
T43 2030-2215 Sentence denotes a Schematic representation of SARS, MERS and HKU1 coronavirus S glycoproteins, showing the positions of N-linked glycosylation amino-acid sequons (NXS/T, where X ≠ P) shown as branches.
T44 2216-2544 Sentence denotes The domains of the S glycoproteins are illustrated: N-terminal domain (NTD), receptor-binding domain (RBD), sub-domain 1/2 (SD1/2), fusion peptide (FP), heptad repeat 1/2 (HR1/2), central helix (CH), and transmembrane domain (TM). b HILIC-UPLC chromatograms of fluorescently labelled N-linked glycans from SARS, MERS and HKU1 S.
T45 2545-2755 Sentence denotes Oligomannose-type glycans (M5 to M9; Man5GlcNAc2–Man9GlcNAc2) (green) and complex-type glycans (magenta) were identified by Endo H digestion, with quantification of major glycan types summarised as a pie chart.
T46 2756-2885 Sentence denotes Oligomannose-type glycans are schematically annotated with mannose residues as green circles and GlcNAc residues as blue squares.
T47 2886-3106 Sentence denotes To ascertain the precise structures of N-linked glycans, glycan pools of each coronavirus S protein were analysed by negative-ion ion-mobility-electrospray ionisation mass spectrometry (IM-ESI MS) (Supplementary Fig. 1).
T48 3107-3277 Sentence denotes Consistent with the UPLC data, IM-ESI MS confirmed an array of complex-type glycans ranging from mono- to tetra-antennary, but also oligomannose- and hybrid-type glycans.
T49 3278-3424 Sentence denotes The glycan compositions characterised in the spectra were largely invariant among the coronaviruses with no major structural differences observed.

LitCovid-sample-Glycan

Id Subject Object Predicate Lexical cue
T1 2815-2822 http://rdf.glyconavi.org/CarTNa/CarTNa218/trivialname denotes mannose
T2 2853-2859 https://glytoucan.org/Structures/Glycans/G26693XF denotes GlcNAc
T3 2853-2859 https://glytoucan.org/Structures/Glycans/G01864SU denotes GlcNAc
T4 2853-2859 https://glytoucan.org/Structures/Glycans/G85391SA denotes GlcNAc
T5 2853-2859 https://glytoucan.org/Structures/Glycans/G41950LU denotes GlcNAc
T6 2853-2859 https://glytoucan.org/Structures/Glycans/G57195RJ denotes GlcNAc
T7 2853-2859 https://glytoucan.org/Structures/Glycans/G17605FD denotes GlcNAc
T8 2853-2859 https://glytoucan.org/Structures/Glycans/G54644LT denotes GlcNAc
T9 2853-2859 https://glytoucan.org/Structures/Glycans/G89565QL denotes GlcNAc
T10 2853-2859 https://glytoucan.org/Structures/Glycans/G55978NL denotes GlcNAc
T11 2853-2859 https://glytoucan.org/Structures/Glycans/G25126RB denotes GlcNAc
T12 2853-2859 https://glytoucan.org/Structures/Glycans/G25694UG denotes GlcNAc
T13 2853-2859 https://glytoucan.org/Structures/Glycans/G80869MR denotes GlcNAc
T14 2853-2859 https://glytoucan.org/Structures/Glycans/G51848AD denotes GlcNAc
T15 2853-2859 https://glytoucan.org/Structures/Glycans/G94667GM denotes GlcNAc
T16 2853-2859 https://glytoucan.org/Structures/Glycans/G30124BO denotes GlcNAc
T17 2853-2859 https://glytoucan.org/Structures/Glycans/G82777EZ denotes GlcNAc
T18 2853-2859 https://glytoucan.org/Structures/Glycans/G10151YZ denotes GlcNAc
T19 2853-2859 https://glytoucan.org/Structures/Glycans/G17585ZM denotes GlcNAc
T20 2853-2859 https://glytoucan.org/Structures/Glycans/G38254HJ denotes GlcNAc
T21 2853-2859 https://glytoucan.org/Structures/Glycans/G04411CJ denotes GlcNAc
T22 2853-2859 https://glytoucan.org/Structures/Glycans/G70374VG denotes GlcNAc
T23 2853-2859 https://glytoucan.org/Structures/Glycans/G30874VW denotes GlcNAc
T24 2853-2859 https://glytoucan.org/Structures/Glycans/G45176LJ denotes GlcNAc
T25 2853-2859 https://glytoucan.org/Structures/Glycans/G75188FS denotes GlcNAc
T26 2853-2859 https://glytoucan.org/Structures/Glycans/G69333MI denotes GlcNAc
T27 2853-2859 https://glytoucan.org/Structures/Glycans/G10676XO denotes GlcNAc
T28 2853-2859 https://glytoucan.org/Structures/Glycans/G14843DJ denotes GlcNAc
T29 2853-2859 https://glytoucan.org/Structures/Glycans/G47546FR denotes GlcNAc
T30 2853-2859 https://glytoucan.org/Structures/Glycans/G73695ZM denotes GlcNAc
T31 2853-2859 https://glytoucan.org/Structures/Glycans/G40745NH denotes GlcNAc
T32 2853-2859 https://glytoucan.org/Structures/Glycans/G31923TJ denotes GlcNAc
T33 2853-2859 https://glytoucan.org/Structures/Glycans/G60519EP denotes GlcNAc
T34 2853-2859 https://glytoucan.org/Structures/Glycans/G07933IA denotes GlcNAc
T35 2853-2859 https://glytoucan.org/Structures/Glycans/G54496YV denotes GlcNAc
T36 2853-2859 https://glytoucan.org/Structures/Glycans/G70070AY denotes GlcNAc
T37 2853-2859 https://glytoucan.org/Structures/Glycans/G62953SQ denotes GlcNAc
T38 2853-2859 https://glytoucan.org/Structures/Glycans/G25238AV denotes GlcNAc
T39 2853-2859 https://glytoucan.org/Structures/Glycans/G40510DP denotes GlcNAc
T40 2853-2859 https://glytoucan.org/Structures/Glycans/G61120TK denotes GlcNAc
T41 2853-2859 https://glytoucan.org/Structures/Glycans/G81830JX denotes GlcNAc
T42 2853-2859 https://glytoucan.org/Structures/Glycans/G01591HR denotes GlcNAc
T43 2853-2859 https://glytoucan.org/Structures/Glycans/G90703NA denotes GlcNAc
T44 2853-2859 https://glytoucan.org/Structures/Glycans/G56520XN denotes GlcNAc
T45 2853-2859 https://glytoucan.org/Structures/Glycans/G41342KV denotes GlcNAc