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PMC:7253482 / 5532-5883 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
198 47-52 Gene denotes spike Gene:43740568
199 3-9 Chemical denotes Glycan MESH:D011134
200 33-37 Disease denotes SARS MESH:D045169
201 42-46 Disease denotes MERS MESH:D018352
275 315-330 Chemical denotes N-linked glycan
291 153-157 Disease denotes SARS MESH:D045169
292 162-166 Disease denotes MERS MESH:D018352
293 275-279 Disease denotes SARS MESH:D045169
294 281-285 Disease denotes MERS MESH:D018352

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T35 53-61 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T36 105-113 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T37 169-176 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T23 33-37 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T24 153-157 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T25 275-279 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T35 74-75 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 271-273 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T37 297-302 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T45 3-9 Chemical denotes Glycan http://purl.obolibrary.org/obo/CHEBI_18154
T46 53-61 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T47 105-113 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T48 169-176 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T49 177-185 Chemical denotes antigens http://purl.obolibrary.org/obo/CHEBI_59132

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T828 3-9 NN denotes Glycan
T829 10-20 NN denotes processing
T830 21-23 IN denotes of
T831 24-32 JJ denotes trimeric
T832 33-37 NNS denotes SARS
T833 38-41 CC denotes and
T834 42-46 NNS denotes MERS
T835 47-52 NN denotes spike
T836 53-61 NNS denotes proteins
T837 62-64 TO denotes To
T838 65-73 VB denotes generate
T839 74-75 DT denotes a
T840 76-83 JJ denotes soluble
T841 84-89 NN denotes mimic
T842 90-92 IN denotes of
T843 93-96 DT denotes the
T844 97-102 JJ denotes viral
T845 103-104 NN denotes S
T846 105-113 NNS denotes proteins
T847 113-114 -COMMA- denotes ,
T848 115-117 PRP denotes we
T849 118-122 VBD denotes used
T850 123-126 DT denotes the
T851 127-140 JJ denotes 2P-stabilised
T852 141-152 JJ denotes native-like
T853 153-157 NNS denotes SARS
T854 158-161 CC denotes and
T855 162-166 NNS denotes MERS
T856 167-168 NN denotes S
T857 169-176 NN denotes protein
T858 177-185 NNS denotes antigens
T859 185-186 -COMMA- denotes ,
T860 187-190 DT denotes the
T861 191-197 NN denotes design
T862 198-201 CC denotes and
T863 202-212 NNS denotes structures
T864 213-215 IN denotes of
T865 216-221 WDT denotes which
T866 222-226 VBP denotes have
T867 227-231 VBN denotes been
T868 232-241 VBN denotes described
T869 242-252 RB denotes previously
T870 253-255 IN denotes by
T871 256-264 NNP denotes Pallesen
T872 265-267 NNP denotes et
T873 268-273 NN denotes al.41
T874 275-279 NNS denotes SARS
T875 279-280 -COMMA- denotes ,
T876 281-285 NNS denotes MERS
T877 286-289 CC denotes and
T878 290-294 NN denotes HKU1
T879 295-296 NN denotes S
T880 297-302 NNS denotes genes
T881 303-309 VBP denotes encode
T882 310-314 JJ denotes many
T883 315-323 JJ denotes N-linked
T884 324-330 NN denotes glycan
T885 331-338 NNS denotes sequons
T886 338-339 -SEMICOLON- denotes ;
T887 340-342 CD denotes 23
T888 342-343 -COMMA- denotes ,
T889 344-346 CD denotes 23
T890 347-350 CC denotes and
R830 T829 T828 arg1Of processing,Glycan
R831 T829 T830 arg1Of processing,of
R832 T833 T830 arg2Of and,of
R833 T832 T831 arg1Of SARS,trimeric
R834 T832 T833 arg1Of SARS,and
R835 T836 T833 arg2Of proteins,and
R836 T836 T834 arg1Of proteins,MERS
R837 T836 T835 arg1Of proteins,spike
R838 T838 T837 arg1Of generate,To
R839 T849 T837 modOf used,To
R840 T848 T838 arg1Of we,generate
R841 T841 T838 arg2Of mimic,generate
R842 T841 T839 arg1Of mimic,a
R843 T841 T840 arg1Of mimic,soluble
R844 T841 T842 arg1Of mimic,of
R845 T846 T842 arg2Of proteins,of
R846 T846 T843 arg1Of proteins,the
R847 T846 T844 arg1Of proteins,viral
R848 T846 T845 arg1Of proteins,S
R849 T849 T847 arg1Of used,","
R850 T848 T849 arg1Of we,used
R851 T854 T849 arg2Of and,used
R852 T853 T850 arg1Of SARS,the
R853 T853 T851 arg1Of SARS,2P-stabilised
R854 T853 T852 arg1Of SARS,native-like
R855 T853 T854 arg1Of SARS,and
R856 T858 T854 arg2Of antigens,and
R857 T858 T855 arg1Of antigens,MERS
R858 T858 T856 arg1Of antigens,S
R859 T858 T857 arg1Of antigens,protein
R860 T868 T859 arg1Of described,","
R861 T862 T860 arg1Of and,the
R862 T861 T862 arg1Of design,and
R863 T863 T862 arg2Of structures,and
R864 T862 T864 arg1Of and,of
R865 T858 T864 arg2Of antigens,of
R866 T858 T865 arg1Of antigens,which
R867 T862 T866 arg1Of and,have
R868 T868 T866 arg2Of described,have
R869 T862 T867 arg1Of and,been
R870 T868 T867 arg2Of described,been
R871 T873 T868 arg1Of al.41,described
R872 T862 T868 arg2Of and,described
R873 T868 T869 arg1Of described,previously
R874 T873 T870 arg2Of al.41,by
R875 T872 T871 arg1Of et,Pallesen
R876 T873 T872 arg1Of al.41,et
R877 T874 T875 arg1Of SARS,","
R878 T876 T875 arg2Of MERS,","
R879 T875 T877 arg1Of ",",and
R880 T880 T877 arg2Of genes,and
R881 T880 T878 arg1Of genes,HKU1
R882 T880 T879 arg1Of genes,S
R883 T877 T881 arg1Of and,encode
R884 T886 T881 arg2Of ;,encode
R885 T885 T882 arg1Of sequons,many
R886 T885 T883 arg1Of sequons,N-linked
R887 T885 T884 arg1Of sequons,glycan
R888 T885 T886 arg1Of sequons,;
R889 T890 T886 arg2Of and,;
R890 T887 T888 arg1Of 23,","
R891 T889 T888 arg2Of 23,","
R892 T888 T890 arg1Of ",",and

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T35 53-61 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T36 105-113 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T37 169-176 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T38 3-9 Chemical denotes Glycan http://purl.obolibrary.org/obo/CHEBI_18154
T39 53-61 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T40 105-113 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T41 169-176 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T40 33-37 Species denotes SARS NCBItxid:694009
T41 42-46 Species denotes MERS NCBItxid:1335626
T42 153-157 Species denotes SARS NCBItxid:694009
T43 162-166 Species denotes MERS NCBItxid:1335626
T44 275-279 Species denotes SARS NCBItxid:694009
T45 281-285 Species denotes MERS NCBItxid:1335626

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T31 3-61 Sentence denotes Glycan processing of trimeric SARS and MERS spike proteins
T32 62-274 Sentence denotes To generate a soluble mimic of the viral S proteins, we used the 2P-stabilised native-like SARS and MERS S protein antigens, the design and structures of which have been described previously by Pallesen et al.41.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T23 33-37 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T24 153-157 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T25 275-279 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
199 3-9 Chemical denotes Glycan MESH:D011134
200 33-37 Disease denotes SARS MESH:D045169
201 42-46 Disease denotes MERS MESH:D018352
198 47-52 Gene denotes spike Gene:43740568
291 153-157 Disease denotes SARS MESH:D045169
292 162-166 Disease denotes MERS MESH:D018352
293 275-279 Disease denotes SARS MESH:D045169
294 281-285 Disease denotes MERS MESH:D018352
275 315-330 Chemical denotes N-linked glycan

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1972 47-61 Protein denotes spike proteins https://www.uniprot.org/uniprot/P31340
T1973 103-113 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T2006 167-176 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T31 3-61 Sentence denotes Glycan processing of trimeric SARS and MERS spike proteins
T32 62-274 Sentence denotes To generate a soluble mimic of the viral S proteins, we used the 2P-stabilised native-like SARS and MERS S protein antigens, the design and structures of which have been described previously by Pallesen et al.41.