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PMC:7253482 / 4865-5140 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
173 82-87 Species denotes HIV-1 Tax:11676
182 57-63 Chemical denotes glycan MESH:D011134
183 201-207 Chemical denotes glycan MESH:D011134
192 73-77 Disease denotes SARS MESH:D045169
193 228-232 Disease denotes SARS MESH:D045169

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T31 82-85 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T32 97-105 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T33 261-274 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T21 73-77 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T22 228-232 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T33 192-193 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T40 97-105 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T41 117-125 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T42 143-145 Chemical denotes EM http://purl.obolibrary.org/obo/CHEBI_73507
T43 261-274 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T2 126-136 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes microscopy http://purl.bioontology.org/ontology/MEDDRA/10069374

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T732 0-2 IN denotes In
T733 3-11 NN denotes addition
T734 11-12 -COMMA- denotes ,
T735 13-15 PRP denotes we
T736 16-23 VBP denotes compare
T737 24-27 DT denotes the
T738 28-38 NNS denotes structures
T739 39-41 IN denotes of
T740 42-45 DT denotes the
T741 46-56 JJ denotes respective
T742 57-63 NN denotes glycan
T743 64-69 NNS denotes coats
T744 70-72 IN denotes of
T745 73-77 NN denotes SARS
T746 78-81 CC denotes and
T747 82-87 NN denotes HIV-1
T748 88-96 NN denotes envelope
T749 97-105 NNS denotes proteins
T750 106-111 VBG denotes using
T751 112-125 NN denotes cryo-electron
T752 126-136 NN denotes microscopy
T753 137-138 -LRB- denotes (
T754 138-145 NN denotes cryo-EM
T755 145-146 -RRB- denotes )
T756 147-150 CC denotes and
T757 151-164 JJ denotes computational
T758 165-174 NN denotes modelling
T759 174-175 -COMMA- denotes ,
T760 176-181 WDT denotes which
T761 182-191 VBP denotes delineate
T762 192-193 DT denotes a
T763 194-200 JJ denotes sparse
T764 201-207 NN denotes glycan
T765 208-214 NN denotes shield
T766 215-224 VBD denotes exhibited
T767 225-227 IN denotes on
T768 228-232 NNP denotes SARS
T769 233-234 NN denotes S
T770 235-243 VBN denotes compared
T771 244-248 IN denotes with
T772 249-254 JJ denotes other
T773 255-260 JJ denotes viral
T774 261-274 NNS denotes glycoproteins
R738 T746 T732 arg1Of and,In
R739 T733 T732 arg2Of addition,In
R740 T746 T734 arg1Of and,","
R741 T735 T736 arg1Of we,compare
R742 T738 T736 arg2Of structures,compare
R743 T738 T737 arg1Of structures,the
R744 T738 T739 arg1Of structures,of
R745 T743 T739 arg2Of coats,of
R746 T743 T740 arg1Of coats,the
R747 T743 T741 arg1Of coats,respective
R748 T743 T742 arg1Of coats,glycan
R749 T743 T744 arg1Of coats,of
R750 T745 T744 arg2Of SARS,of
R751 T736 T746 arg1Of compare,and
R752 T766 T746 arg2Of exhibited,and
R753 T749 T747 arg1Of proteins,HIV-1
R754 T749 T748 arg1Of proteins,envelope
R755 T749 T750 arg1Of proteins,using
R756 T756 T750 arg2Of and,using
R757 T752 T751 arg1Of microscopy,cryo-electron
R758 T752 T753 arg1Of microscopy,(
R759 T754 T753 arg2Of cryo-EM,(
R760 T755 T753 arg3Of ),(
R761 T752 T756 arg1Of microscopy,and
R762 T758 T756 arg2Of modelling,and
R763 T758 T757 arg1Of modelling,computational
R764 T758 T759 arg1Of modelling,","
R765 T758 T760 arg1Of modelling,which
R766 T758 T761 arg1Of modelling,delineate
R767 T765 T761 arg2Of shield,delineate
R768 T765 T762 arg1Of shield,a
R769 T765 T763 arg1Of shield,sparse
R770 T765 T764 arg1Of shield,glycan
R771 T749 T766 arg1Of proteins,exhibited
R772 T769 T766 arg2Of S,exhibited
R773 T766 T767 arg1Of exhibited,on
R774 T768 T767 arg2Of SARS,on
R775 T766 T770 arg1Of exhibited,compared
R776 T771 T770 arg2Of with,compared
R777 T774 T771 arg2Of glycoproteins,with
R778 T774 T772 arg1Of glycoproteins,other
R779 T774 T773 arg1Of glycoproteins,viral

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T31 82-85 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T32 97-105 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T33 261-274 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T35 97-105 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T36 261-274 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T37 73-77 Species denotes SARS NCBItxid:694009
T38 82-87 Species denotes HIV-1 NCBItxid:11676
T39 228-232 Species denotes SARS NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T27 0-275 Sentence denotes In addition, we compare the structures of the respective glycan coats of SARS and HIV-1 envelope proteins using cryo-electron microscopy (cryo-EM) and computational modelling, which delineate a sparse glycan shield exhibited on SARS S compared with other viral glycoproteins.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T21 73-77 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T22 228-232 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
182 57-63 Chemical denotes glycan MESH:D011134
192 73-77 Disease denotes SARS MESH:D045169
173 82-87 Species denotes HIV-1 Tax:11676
183 201-207 Chemical denotes glycan MESH:D011134
193 228-232 Disease denotes SARS MESH:D045169

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1883 88-105 Protein denotes envelope proteins https://www.uniprot.org/uniprot/P24123|https://www.uniprot.org/uniprot/P0C782|https://www.uniprot.org/uniprot/P0C781|https://www.uniprot.org/uniprot/C1JJY3
T1887 261-274 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T27 0-275 Sentence denotes In addition, we compare the structures of the respective glycan coats of SARS and HIV-1 envelope proteins using cryo-electron microscopy (cryo-EM) and computational modelling, which delineate a sparse glycan shield exhibited on SARS S compared with other viral glycoproteins.