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PMC:7253482 / 3875-4197 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
146 0-6 Chemical denotes Glycan MESH:D011134
147 162-168 Chemical denotes glycan MESH:D011134

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T25 29-42 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T26 102-109 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T27 43-46 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T28 69-70 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 183-184 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T25 0-6 Chemical denotes Glycan http://purl.obolibrary.org/obo/CHEBI_18154
T26 29-42 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T27 102-109 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T28 132-141 Chemical denotes immunogen http://purl.obolibrary.org/obo/CHEBI_60816
T29 196-205 Chemical denotes immunogen http://purl.obolibrary.org/obo/CHEBI_60816

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T583 0-6 NN denotes Glycan
T584 7-17 NN denotes processing
T585 18-20 IN denotes on
T586 21-28 JJ denotes soluble
T587 29-42 NNS denotes glycoproteins
T588 43-46 VBZ denotes has
T589 47-51 RB denotes also
T590 52-56 VBN denotes been
T591 57-62 VBN denotes shown
T592 63-65 TO denotes to
T593 66-68 VB denotes be
T594 69-70 DT denotes a
T595 71-77 JJ denotes strong
T596 78-86 NN denotes reporter
T597 87-89 IN denotes of
T598 90-101 JJ denotes native-like
T599 102-109 NN denotes protein
T600 110-122 NN denotes architecture
T601 123-126 CC denotes and
T602 127-131 RB denotes thus
T603 132-141 NN denotes immunogen
T604 142-156 NN denotes integrity36–38
T605 156-157 -SEMICOLON- denotes ;
T606 158-161 CC denotes and
T607 162-168 NN denotes glycan
T608 169-179 NN denotes processing
T609 180-182 IN denotes on
T610 183-184 DT denotes a
T611 185-195 JJ denotes successful
T612 196-205 NN denotes immunogen
T613 206-215 NN denotes candidate
T614 216-222 MD denotes should
T615 223-232 RB denotes therefore
T616 233-238 VB denotes mimic
T617 238-239 -COMMA- denotes ,
T618 240-242 RB denotes as
T619 243-250 RB denotes closely
T620 251-253 IN denotes as
T621 254-262 JJ denotes possible
T622 262-263 -COMMA- denotes ,
T623 264-267 DT denotes the
T624 268-278 JJ denotes structural
T625 279-287 NNS denotes features
T626 288-296 VBN denotes observed
T627 297-299 IN denotes on
T628 300-303 DT denotes the
T629 304-310 JJ denotes native
T630 311-321 NN denotes virus39,40
R584 T584 T583 arg1Of processing,Glycan
R585 T584 T585 arg1Of processing,on
R586 T587 T585 arg2Of glycoproteins,on
R587 T587 T586 arg1Of glycoproteins,soluble
R588 T584 T588 arg1Of processing,has
R589 T591 T588 arg2Of shown,has
R590 T591 T589 arg1Of shown,also
R591 T584 T590 arg1Of processing,been
R592 T591 T590 arg2Of shown,been
R593 T584 T591 arg2Of processing,shown
R594 T593 T591 arg3Of be,shown
R595 T593 T592 arg1Of be,to
R596 T584 T593 arg1Of processing,be
R597 T596 T593 arg2Of reporter,be
R598 T596 T594 arg1Of reporter,a
R599 T596 T595 arg1Of reporter,strong
R600 T596 T597 arg1Of reporter,of
R601 T600 T597 arg2Of architecture,of
R602 T600 T598 arg1Of architecture,native-like
R603 T600 T599 arg1Of architecture,protein
R604 T591 T601 arg1Of shown,and
R605 T616 T601 arg2Of mimic,and
R606 T616 T602 arg1Of mimic,thus
R607 T604 T603 arg1Of integrity36–38,immunogen
R608 T606 T605 arg1Of and,;
R609 T604 T606 arg1Of integrity36–38,and
R610 T608 T606 arg2Of processing,and
R611 T608 T607 arg1Of processing,glycan
R612 T606 T609 arg1Of and,on
R613 T613 T609 arg2Of candidate,on
R614 T613 T610 arg1Of candidate,a
R615 T613 T611 arg1Of candidate,successful
R616 T613 T612 arg1Of candidate,immunogen
R617 T606 T614 arg1Of and,should
R618 T616 T614 arg2Of mimic,should
R619 T616 T615 arg1Of mimic,therefore
R620 T606 T616 arg1Of and,mimic
R621 T625 T616 arg2Of features,mimic
R622 T616 T617 arg1Of mimic,","
R623 T619 T618 arg1Of closely,as
R624 T616 T619 arg1Of mimic,closely
R625 T619 T620 arg1Of closely,as
R626 T621 T620 arg2Of possible,as
R627 T616 T622 arg1Of mimic,","
R628 T625 T623 arg1Of features,the
R629 T625 T624 arg1Of features,structural
R630 T625 T626 arg2Of features,observed
R631 T626 T627 arg1Of observed,on
R632 T630 T627 arg2Of "virus39,40",on
R633 T630 T628 arg1Of "virus39,40",the
R634 T630 T629 arg1Of "virus39,40",native

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T25 29-42 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T26 102-109 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T23 0-6 Chemical denotes Glycan http://purl.obolibrary.org/obo/CHEBI_18154
T24 29-42 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T25 102-109 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T23 0-322 Sentence denotes Glycan processing on soluble glycoproteins has also been shown to be a strong reporter of native-like protein architecture and thus immunogen integrity36–38; and glycan processing on a successful immunogen candidate should therefore mimic, as closely as possible, the structural features observed on the native virus39,40.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
146 0-6 Chemical denotes Glycan MESH:D011134
147 162-168 Chemical denotes glycan MESH:D011134

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1633 29-42 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T23 0-322 Sentence denotes Glycan processing on soluble glycoproteins has also been shown to be a strong reporter of native-like protein architecture and thus immunogen integrity36–38; and glycan processing on a successful immunogen candidate should therefore mimic, as closely as possible, the structural features observed on the native virus39,40.