PMC:7253482 / 32505-32921 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"985","span":{"begin":40,"end":55},"obj":"Chemical"},{"id":"986","span":{"begin":367,"end":388},"obj":"Chemical"},{"id":"987","span":{"begin":72,"end":76},"obj":"Disease"},{"id":"988","span":{"begin":78,"end":82},"obj":"Disease"},{"id":"989","span":{"begin":227,"end":261},"obj":"Disease"}],"attributes":[{"id":"A987","pred":"tao:has_database_id","subj":"987","obj":"MESH:D045169"},{"id":"A988","pred":"tao:has_database_id","subj":"988","obj":"MESH:D018352"},{"id":"A989","pred":"tao:has_database_id","subj":"989","obj":"MESH:C536108"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T168","span":{"begin":376,"end":388},"obj":"Body_part"}],"attributes":[{"id":"A168","pred":"fma_id","subj":"T168","obj":"http://purl.org/sig/ont/fma/fma82737"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T12","span":{"begin":389,"end":405},"obj":"Body_part"}],"attributes":[{"id":"A12","pred":"uberon_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/UBERON_4200047"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T98","span":{"begin":72,"end":76},"obj":"Disease"}],"attributes":[{"id":"A98","pred":"mondo_id","subj":"T98","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T352","span":{"begin":113,"end":121},"obj":"Chemical"},{"id":"T353","span":{"begin":149,"end":151},"obj":"Chemical"},{"id":"T354","span":{"begin":254,"end":261},"obj":"Chemical"},{"id":"T355","span":{"begin":267,"end":269},"obj":"Chemical"},{"id":"T356","span":{"begin":376,"end":388},"obj":"Chemical"}],"attributes":[{"id":"A352","pred":"chebi_id","subj":"T352","obj":"http://purl.obolibrary.org/obo/CHEBI_10545"},{"id":"A353","pred":"chebi_id","subj":"T353","obj":"http://purl.obolibrary.org/obo/CHEBI_141439"},{"id":"A354","pred":"chebi_id","subj":"T354","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A355","pred":"chebi_id","subj":"T355","obj":"http://purl.obolibrary.org/obo/CHEBI_141439"},{"id":"A356","pred":"chebi_id","subj":"T356","obj":"http://purl.obolibrary.org/obo/CHEBI_16646"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}

{"project":"LitCovid-sample-MedDRA","denotations":[{"id":"T13","span":{"begin":122,"end":132},"obj":"http://purl.bioontology.org/ontology/MEDDRA/10022891"}],"attributes":[{"id":"A13","pred":"meddra_id","subj":"T13","obj":"http://purl.bioontology.org/ontology/MEDDRA/10069374"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}

{"project":"LitCovid-sample-PD-IDO","denotations":[{"id":"T90","span":{"begin":339,"end":343},"obj":"http://purl.obolibrary.org/obo/BFO_0000029"},{"id":"T91","span":{"begin":400,"end":405},"obj":"http://purl.obolibrary.org/obo/BFO_0000029"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}

{"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T166","span":{"begin":376,"end":388},"obj":"Body_part"}],"attributes":[{"id":"A166","pred":"fma_id","subj":"T166","obj":"http://purl.org/sig/ont/fma/fma82737"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}

{"project":"LitCovid-sample-CHEBI","denotations":[{"id":"T249","span":{"begin":254,"end":261},"obj":"Chemical"},{"id":"T250","span":{"begin":376,"end":388},"obj":"Chemical"}],"attributes":[{"id":"A249","pred":"chebi_id","subj":"T249","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A250","pred":"chebi_id","subj":"T250","obj":"http://purl.obolibrary.org/obo/CHEBI_16646"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}

{"project":"LitCovid-sample-PD-NCBITaxon","denotations":[{"id":"T203","span":{"begin":72,"end":76},"obj":"Species"},{"id":"T204","span":{"begin":78,"end":82},"obj":"Species"}],"attributes":[{"id":"A203","pred":"ncbi_taxonomy_id","subj":"T203","obj":"NCBItxid:694009"},{"id":"A204","pred":"ncbi_taxonomy_id","subj":"T204","obj":"NCBItxid:1335626"}],"namespaces":[{"prefix":"NCBItxid","uri":"http://purl.bioontology.org/ontology/NCBITAXON/"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}

{"project":"LitCovid-sample-sentences","denotations":[{"id":"T193","span":{"begin":0,"end":18},"obj":"Sentence"},{"id":"T194","span":{"begin":19,"end":292},"obj":"Sentence"},{"id":"T195","span":{"begin":293,"end":416},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}

{"project":"LitCovid-sample-PD-UBERON","denotations":[{"id":"T12","span":{"begin":389,"end":405},"obj":"Body_part"}],"attributes":[{"id":"A12","pred":"uberon_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/UBERON_4200047"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}

{"project":"LitCovid-sample-PD-MONDO","denotations":[{"id":"T93","span":{"begin":72,"end":76},"obj":"Disease"}],"attributes":[{"id":"A93","pred":"mondo_id","subj":"T93","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}

{"project":"LitCovid-sample-Pubtator","denotations":[{"id":"985","span":{"begin":40,"end":55},"obj":"Chemical"},{"id":"987","span":{"begin":72,"end":76},"obj":"Disease"},{"id":"988","span":{"begin":78,"end":82},"obj":"Disease"},{"id":"989","span":{"begin":227,"end":261},"obj":"Disease"},{"id":"986","span":{"begin":367,"end":388},"obj":"Chemical"}],"attributes":[{"id":"A987","pred":"pubann:denotes","subj":"987","obj":"MESH:D045169"},{"id":"A988","pred":"pubann:denotes","subj":"988","obj":"MESH:D018352"},{"id":"A989","pred":"pubann:denotes","subj":"989","obj":"MESH:C536108"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}

{"project":"LitCovid-sentences","denotations":[{"id":"T193","span":{"begin":0,"end":18},"obj":"Sentence"},{"id":"T194","span":{"begin":19,"end":292},"obj":"Sentence"},{"id":"T195","span":{"begin":293,"end":416},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Model construction\nStructural models of N-linked glycan presentation on SARS, MERS and HKU1 S were created using electron microscopy structures (PDB ID 5X58, 5X59, and 5I08, respectively)9,11, along with complex-, hybrid-, and oligomannose-type N-linked glycans (PDB ID 4BYH, 4B7I, and 2WAH). The most dominant glycoform presented at each site was modelled on to the N-linked carbohydrate attachment sites in Coot68."}