PMC:7253482 / 29119-29887
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 922 | 91-107 | Chemical | denotes | N-linked glycans | |
| 923 | 186-204 | Chemical | denotes | ammonium phosphate | MESH:C024788 |
| 924 | 226-235 | Chemical | denotes | phosphate | MESH:D010710 |
| 925 | 254-261 | Chemical | denotes | Glycans | MESH:D011134 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T156 | 364-373 | Body_part | denotes | capillary | http://purl.org/sig/ont/fma/fma63194 |
| T157 | 452-455 | Body_part | denotes | l/h | http://purl.org/sig/ont/fma/fma74642 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T9 | 364-373 | Body_part | denotes | capillary | http://purl.obolibrary.org/obo/UBERON_0001982 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T209 | 46-48 | http://purl.obolibrary.org/obo/CLO_0007874 | denotes | MS |
| T210 | 60-62 | http://purl.obolibrary.org/obo/CLO_0007874 | denotes | MS |
| T211 | 125-126 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T212 | 139-147 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T213 | 168-169 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T214 | 301-302 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T215 | 315-325 | http://purl.obolibrary.org/obo/OBI_0000968 | denotes | instrument |
| T216 | 593-596 | http://purl.obolibrary.org/obo/CLO_0007874 | denotes | m/s |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T291 | 9-12 | Chemical | denotes | ion | http://purl.obolibrary.org/obo/CHEBI_24870 |
| T292 | 46-48 | Chemical | denotes | MS | http://purl.obolibrary.org/obo/CHEBI_73613 |
| T293 | 60-62 | Chemical | denotes | MS | http://purl.obolibrary.org/obo/CHEBI_73613 |
| T294 | 100-107 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T295 | 186-194 | Chemical | denotes | ammonium | http://purl.obolibrary.org/obo/CHEBI_28938 |
| T296 | 195-204 | Chemical | denotes | phosphate | http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26020|http://purl.obolibrary.org/obo/CHEBI_35780|http://purl.obolibrary.org/obo/CHEBI_43474 |
| T300 | 226-235 | Chemical | denotes | phosphate | http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26020|http://purl.obolibrary.org/obo/CHEBI_35780|http://purl.obolibrary.org/obo/CHEBI_43474 |
LitCovid-sample-PD-FMA
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T155 | 364-373 | Body_part | denotes | capillary | http://purl.org/sig/ont/fma/fma63194 |
LitCovid-sample-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T200 | 9-12 | Chemical | denotes | ion | http://purl.obolibrary.org/obo/CHEBI_24870 |
| T201 | 100-107 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T202 | 186-194 | Chemical | denotes | ammonium | http://purl.obolibrary.org/obo/CHEBI_28938 |
| T203 | 195-204 | Chemical | denotes | phosphate | http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26020|http://purl.obolibrary.org/obo/CHEBI_35780|http://purl.obolibrary.org/obo/CHEBI_43474 |
| T207 | 226-235 | Chemical | denotes | phosphate | http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26020|http://purl.obolibrary.org/obo/CHEBI_35780|http://purl.obolibrary.org/obo/CHEBI_43474 |
LitCovid-sample-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T171 | 0-253 | Sentence | denotes | Prior to ion-mobility electrospray ionisation MS and tandem MS analysis, PNGase F released N-linked glycans were purified on a Nafion® 117 membrane (Sigma-Aldrich) and a trace amount of ammonium phosphate was added to promote phosphate adduct formation. |
| T172 | 254-670 | Sentence | denotes | Glycans were analyzed by direct infusion using a Synapt G2Si instrument (Waters) with the following settings: capillary voltage, 0.8–1.0 kV; sample cone, 150 V; extraction cone, 150 V; cone gas, 40 l/h; source temperature, 80 °C; trap collision voltage, 4–160 V; transfer collision voltage, 4 V; trap DC bias, 60 V; IMS wave velocity, 450 m/s; IMS wave height, 40 V; trap gas flow, 2 ml/min; IMS gas flow, 80 ml/min. |
| T173 | 671-768 | Sentence | denotes | Data were acquired and processed with MassLynx v4.1 and Driftscope version 2.8 software (Waters). |
LitCovid-sample-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T9 | 364-373 | Body_part | denotes | capillary | http://purl.obolibrary.org/obo/UBERON_0001982 |
LitCovid-sample-Pubtator
| Id | Subject | Object | Predicate | Lexical cue | pubann:denotes |
|---|---|---|---|---|---|
| 922 | 91-107 | Chemical | denotes | N-linked glycans | |
| 923 | 186-204 | Chemical | denotes | ammonium phosphate | MESH:C024788 |
| 924 | 226-235 | Chemical | denotes | phosphate | MESH:D010710 |
| 925 | 254-261 | Chemical | denotes | Glycans | MESH:D011134 |
LitCovid-sample-UniProt
| Id | Subject | Object | Predicate | Lexical cue | uniprot_id |
|---|---|---|---|---|---|
| T5835 | 73-79 | Protein | denotes | PNGase | https://www.uniprot.org/uniprot/Q9TW67|https://www.uniprot.org/uniprot/Q9NR70|https://www.uniprot.org/uniprot/Q9NBD6|https://www.uniprot.org/uniprot/Q9JI78|https://www.uniprot.org/uniprot/Q9CTK3|https://www.uniprot.org/uniprot/Q9BVR8|https://www.uniprot.org/uniprot/Q96IV0|https://www.uniprot.org/uniprot/Q8K113|https://www.uniprot.org/uniprot/Q6PJD8|https://www.uniprot.org/uniprot/Q5ZJM3|https://www.uniprot.org/uniprot/Q5XI55|https://www.uniprot.org/uniprot/Q5WNE3|https://www.uniprot.org/uniprot/Q59FB1|https://www.uniprot.org/uniprot/Q503I8|https://www.uniprot.org/uniprot/Q4R6F3|https://www.uniprot.org/uniprot/B4DJE9|https://www.uniprot.org/uniprot/A8X5N2 |
| T5852 | 484-488 | Protein | denotes | trap | https://www.uniprot.org/uniprot/Q9Y2M3|https://www.uniprot.org/uniprot/Q9UFF0|https://www.uniprot.org/uniprot/Q9R1R4|https://www.uniprot.org/uniprot/Q96JT1|https://www.uniprot.org/uniprot/Q8R181|https://www.uniprot.org/uniprot/Q8NHU6|https://www.uniprot.org/uniprot/Q8K1H1|https://www.uniprot.org/uniprot/Q5VV27|https://www.uniprot.org/uniprot/Q5FVD0|https://www.uniprot.org/uniprot/E7EQD4|https://www.uniprot.org/uniprot/B4DXF7|https://www.uniprot.org/uniprot/B4DG99|https://www.uniprot.org/uniprot/B2RBX3|https://www.uniprot.org/uniprot/B1AWH5|https://www.uniprot.org/uniprot/B1AWG7|https://www.uniprot.org/uniprot/A6NCI6 |
| T5868 | 550-554 | Protein | denotes | trap | https://www.uniprot.org/uniprot/Q9Y2M3|https://www.uniprot.org/uniprot/Q9UFF0|https://www.uniprot.org/uniprot/Q9R1R4|https://www.uniprot.org/uniprot/Q96JT1|https://www.uniprot.org/uniprot/Q8R181|https://www.uniprot.org/uniprot/Q8NHU6|https://www.uniprot.org/uniprot/Q8K1H1|https://www.uniprot.org/uniprot/Q5VV27|https://www.uniprot.org/uniprot/Q5FVD0|https://www.uniprot.org/uniprot/E7EQD4|https://www.uniprot.org/uniprot/B4DXF7|https://www.uniprot.org/uniprot/B4DG99|https://www.uniprot.org/uniprot/B2RBX3|https://www.uniprot.org/uniprot/B1AWH5|https://www.uniprot.org/uniprot/B1AWG7|https://www.uniprot.org/uniprot/A6NCI6 |
| T5884 | 621-625 | Protein | denotes | trap | https://www.uniprot.org/uniprot/Q9Y2M3|https://www.uniprot.org/uniprot/Q9UFF0|https://www.uniprot.org/uniprot/Q9R1R4|https://www.uniprot.org/uniprot/Q96JT1|https://www.uniprot.org/uniprot/Q8R181|https://www.uniprot.org/uniprot/Q8NHU6|https://www.uniprot.org/uniprot/Q8K1H1|https://www.uniprot.org/uniprot/Q5VV27|https://www.uniprot.org/uniprot/Q5FVD0|https://www.uniprot.org/uniprot/E7EQD4|https://www.uniprot.org/uniprot/B4DXF7|https://www.uniprot.org/uniprot/B4DG99|https://www.uniprot.org/uniprot/B2RBX3|https://www.uniprot.org/uniprot/B1AWH5|https://www.uniprot.org/uniprot/B1AWG7|https://www.uniprot.org/uniprot/A6NCI6 |
LitCovid-sample-PD-GO-BP-0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T59 | 73-81 | http://purl.obolibrary.org/obo/GO_0000224 | denotes | PNGase F |
| T60 | 243-252 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | formation |
LitCovid-sample-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T52 | 243-252 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | formation |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T57 | 243-252 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | formation |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T171 | 0-253 | Sentence | denotes | Prior to ion-mobility electrospray ionisation MS and tandem MS analysis, PNGase F released N-linked glycans were purified on a Nafion® 117 membrane (Sigma-Aldrich) and a trace amount of ammonium phosphate was added to promote phosphate adduct formation. |
| T172 | 254-670 | Sentence | denotes | Glycans were analyzed by direct infusion using a Synapt G2Si instrument (Waters) with the following settings: capillary voltage, 0.8–1.0 kV; sample cone, 150 V; extraction cone, 150 V; cone gas, 40 l/h; source temperature, 80 °C; trap collision voltage, 4–160 V; transfer collision voltage, 4 V; trap DC bias, 60 V; IMS wave velocity, 450 m/s; IMS wave height, 40 V; trap gas flow, 2 ml/min; IMS gas flow, 80 ml/min. |
| T173 | 671-768 | Sentence | denotes | Data were acquired and processed with MassLynx v4.1 and Driftscope version 2.8 software (Waters). |