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PMC:7253482 / 283-699 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
24 225-230 Gene denotes spike Gene:43740568
27 108-119 Species denotes Coronavirus Tax:11118
28 400-404 Species denotes CoVs Tax:11118
33 84-89 Gene denotes spike Gene:43740568
34 272-278 Chemical denotes glycan MESH:D011134
35 330-342 Chemical denotes oligomannose
36 348-354 Chemical denotes glycan MESH:D011134
42 290-294 Disease denotes MERS MESH:D018352
43 386-390 Disease denotes SARS MESH:D045169

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 94-106 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T2 122-130 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 386-390 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 3-10 http://purl.obolibrary.org/obo/CLO_0009985 denotes focuses
T2 248-249 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 94-106 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T2 122-130 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T2 55-78 http://purl.obolibrary.org/obo/GO_0006959 denotes humoral immune response
T3 63-78 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T4 206-211 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T40 3-10 VBZ denotes focuses
T41 11-13 IN denotes on
T42 14-17 DT denotes the
T43 18-27 JJ denotes principal
T44 28-34 NN denotes target
T45 35-37 IN denotes of
T46 38-41 DT denotes the
T47 42-54 VBG denotes neutralizing
T48 55-62 JJ denotes humoral
T49 63-69 JJ denotes immune
T50 70-78 NN denotes response
T51 78-79 -COMMA- denotes ,
T52 80-83 DT denotes the
T53 84-89 NN denotes spike
T54 90-91 -LRB- denotes (
T55 91-92 NN denotes S
T56 92-93 -RRB- denotes )
T57 94-106 NN denotes glycoprotein
T58 108-119 NN denotes Coronavirus
T59 120-121 NN denotes S
T60 122-130 NNS denotes proteins
T61 131-134 VBP denotes are
T62 135-146 RB denotes extensively
T63 147-159 VBN denotes glycosylated
T64 159-160 -COMMA- denotes ,
T65 161-169 VBG denotes encoding
T66 170-176 IN denotes around
T67 177-182 CD denotes 66–87
T68 183-191 JJ denotes N-linked
T69 192-205 NN denotes glycosylation
T70 206-211 NNS denotes sites
T71 212-215 IN denotes per
T72 216-224 JJ denotes trimeric
T73 225-230 NN denotes spike
T74 232-236 RB denotes Here
T75 236-237 -COMMA- denotes ,
T76 238-240 PRP denotes we
T77 241-247 VBP denotes reveal
T78 248-249 DT denotes a
T79 250-258 JJ denotes specific
T80 259-263 NN denotes area
T81 264-266 IN denotes of
T82 267-271 JJ denotes high
T83 272-278 NN denotes glycan
T84 279-286 NN denotes density
T85 287-289 IN denotes on
T86 290-294 NNP denotes MERS
T87 295-296 NNP denotes S
T88 297-301 WDT denotes that
T89 302-309 VBZ denotes results
T90 310-312 IN denotes in
T91 313-316 DT denotes the
T92 317-326 NN denotes formation
T93 327-329 IN denotes of
T94 330-347 JJ denotes oligomannose-type
T95 348-354 NN denotes glycan
T96 355-363 NNS denotes clusters
T97 363-364 -COMMA- denotes ,
T98 365-370 WDT denotes which
T99 371-375 VBD denotes were
T100 376-382 JJ denotes absent
T101 383-385 IN denotes on
T102 386-390 NNS denotes SARS
T103 391-394 CC denotes and
T104 395-399 NN denotes HKU1
T105 400-404 NNS denotes CoVs
T106 406-408 PRP denotes We
T107 409-416 VBP denotes provide
R37 T40 T41 arg1Of focuses,on
R38 T44 T41 arg2Of target,on
R39 T44 T42 arg1Of target,the
R40 T44 T43 arg1Of target,principal
R41 T44 T45 arg1Of target,of
R42 T50 T45 arg2Of response,of
R43 T50 T46 arg1Of response,the
R44 T50 T47 arg1Of response,neutralizing
R45 T50 T48 arg1Of response,humoral
R46 T50 T49 arg1Of response,immune
R47 T50 T51 arg1Of response,","
R48 T57 T51 arg2Of glycoprotein,","
R49 T57 T52 arg1Of glycoprotein,the
R50 T57 T53 arg1Of glycoprotein,spike
R51 T53 T54 arg1Of spike,(
R52 T55 T54 arg2Of S,(
R53 T56 T54 arg3Of ),(
R54 T60 T58 arg1Of proteins,Coronavirus
R55 T60 T59 arg1Of proteins,S
R56 T60 T61 arg1Of proteins,are
R57 T63 T61 arg2Of glycosylated,are
R58 T63 T62 arg1Of glycosylated,extensively
R59 T60 T63 arg2Of proteins,glycosylated
R60 T63 T64 arg1Of glycosylated,","
R61 T60 T65 arg1Of proteins,encoding
R62 T70 T65 arg2Of sites,encoding
R63 T63 T65 modOf glycosylated,encoding
R64 T70 T66 arg1Of sites,around
R65 T70 T67 arg1Of sites,66–87
R66 T70 T68 arg1Of sites,N-linked
R67 T70 T69 arg1Of sites,glycosylation
R68 T70 T71 arg1Of sites,per
R69 T73 T71 arg2Of spike,per
R70 T73 T72 arg1Of spike,trimeric
R71 T77 T74 arg1Of reveal,Here
R72 T77 T75 arg1Of reveal,","
R73 T76 T77 arg1Of we,reveal
R74 T80 T77 arg2Of area,reveal
R75 T80 T78 arg1Of area,a
R76 T80 T79 arg1Of area,specific
R77 T80 T81 arg1Of area,of
R78 T84 T81 arg2Of density,of
R79 T84 T82 arg1Of density,high
R80 T84 T83 arg1Of density,glycan
R81 T80 T85 arg1Of area,on
R82 T87 T85 arg2Of S,on
R83 T87 T86 arg1Of S,MERS
R84 T80 T88 arg1Of area,that
R85 T80 T89 arg1Of area,results
R86 T89 T90 arg1Of results,in
R87 T92 T90 arg2Of formation,in
R88 T92 T91 arg1Of formation,the
R89 T92 T93 arg1Of formation,of
R90 T96 T93 arg2Of clusters,of
R91 T96 T94 arg1Of clusters,oligomannose-type
R92 T96 T95 arg1Of clusters,glycan
R93 T96 T97 arg1Of clusters,","
R94 T96 T98 arg1Of clusters,which
R95 T96 T99 arg1Of clusters,were
R96 T100 T99 arg2Of absent,were
R97 T96 T100 arg1Of clusters,absent
R98 T100 T101 arg1Of absent,on
R99 T103 T101 arg2Of and,on
R100 T102 T103 arg1Of SARS,and
R101 T105 T103 arg2Of CoVs,and
R102 T105 T104 arg1Of CoVs,HKU1
R103 T106 T107 arg1Of We,provide

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T1 94-106 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T2 122-130 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 94-106 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T2 122-130 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T4 290-294 Species denotes MERS NCBItxid:1335626
T5 386-390 Species denotes SARS NCBItxid:694009
T6 395-404 Species denotes HKU1 CoVs NCBItxid:290028

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T5 108-231 Sentence denotes Coronavirus S proteins are extensively glycosylated, encoding around 66–87 N-linked glycosylation sites per trimeric spike.
T6 232-405 Sentence denotes Here, we reveal a specific area of high glycan density on MERS S that results in the formation of oligomannose-type glycan clusters, which were absent on SARS and HKU1 CoVs.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 386-390 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
33 84-89 Gene denotes spike Gene:43740568
27 108-119 Species denotes Coronavirus Tax:11118
24 225-230 Gene denotes spike Gene:43740568
34 272-278 Chemical denotes glycan MESH:D011134
42 290-294 Disease denotes MERS MESH:D018352
35 330-342 Chemical denotes oligomannose
36 348-354 Chemical denotes glycan MESH:D011134
43 386-390 Disease denotes SARS MESH:D045169
28 400-404 Species denotes CoVs Tax:11118

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1 90-106 Protein denotes (S) glycoprotein https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94|https://www.uniprot.org/uniprot/Q4ZJS1
T100 120-130 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T2 55-78 http://purl.obolibrary.org/obo/GO_0006959 denotes humoral immune response
T3 63-78 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T4 192-205 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T5 317-326 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T2 55-78 http://purl.obolibrary.org/obo/GO_0006959 denotes humoral immune response
T3 63-78 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T4 192-205 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T5 317-326 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 55-78 http://purl.obolibrary.org/obo/GO_0006959 denotes humoral immune response
T3 63-78 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T4 183-205 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T5 192-205 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T6 317-326 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T5 108-231 Sentence denotes Coronavirus S proteins are extensively glycosylated, encoding around 66–87 N-linked glycosylation sites per trimeric spike.
T6 232-405 Sentence denotes Here, we reveal a specific area of high glycan density on MERS S that results in the formation of oligomannose-type glycan clusters, which were absent on SARS and HKU1 CoVs.