PMC:7253482 / 2777-3081
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
112 | 57-62 | Gene | denotes | spike | Gene:43740568 |
115 | 68-78 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
119 | 20-35 | Chemical | denotes | N-linked glycan | |
120 | 232-239 | Chemical | denotes | glycans | MESH:D011134 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T17 | 143-150 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T18 | 182-195 | Body_part | denotes | immune system | http://purl.org/sig/ont/fma/fma9825 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 182-195 | Body_part | denotes | immune system | http://purl.obolibrary.org/obo/UBERON_0002405 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T16 | 68-76 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T17 | 68-72 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20 | 182-195 | http://purl.obolibrary.org/obo/UBERON_0002405 | denotes | immune system |
T21 | 242-244 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T17 | 143-150 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sample-PD-IDO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14 | 93-98 | http://purl.obolibrary.org/obo/BFO_0000029 | denotes | sites |
T15 | 169-173 | http://purl.obolibrary.org/obo/IDO_0000531 | denotes | host |
T16 | 219-223 | http://purl.obolibrary.org/obo/IDO_0000531 | denotes | host |
LitCovid-sample-Enju
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T428 | 3-7 | CC | denotes | both |
T429 | 8-16 | VBG | denotes | encoding |
T430 | 17-19 | CD | denotes | 69 |
T431 | 20-28 | JJ | denotes | N-linked |
T432 | 29-35 | NN | denotes | glycan |
T433 | 36-43 | NNS | denotes | sequons |
T434 | 44-47 | IN | denotes | per |
T435 | 48-56 | JJ | denotes | trimeric |
T436 | 57-62 | NN | denotes | spike |
T437 | 63-67 | IN | denotes | with |
T438 | 68-78 | NN | denotes | SARS-CoV-2 |
T439 | 79-89 | VBG | denotes | containing |
T440 | 90-92 | CD | denotes | 66 |
T441 | 93-98 | NNS | denotes | sites |
T442 | 100-105 | DT | denotes | These |
T443 | 106-119 | NNS | denotes | modifications |
T444 | 120-125 | RB | denotes | often |
T445 | 126-130 | VBP | denotes | mask |
T446 | 131-142 | JJ | denotes | immunogenic |
T447 | 143-150 | NN | denotes | protein |
T448 | 151-159 | NNS | denotes | epitopes |
T449 | 160-164 | IN | denotes | from |
T450 | 165-168 | DT | denotes | the |
T451 | 169-173 | NN | denotes | host |
T452 | 174-181 | JJ | denotes | humoral |
T453 | 182-188 | JJ | denotes | immune |
T454 | 189-195 | NN | denotes | system |
T455 | 196-198 | IN | denotes | by |
T456 | 199-208 | VBG | denotes | occluding |
T457 | 209-213 | PRP | denotes | them |
T458 | 214-218 | IN | denotes | with |
T459 | 219-231 | JJ | denotes | host-derived |
T460 | 232-244 | NN | denotes | glycans16–18 |
T461 | 246-250 | DT | denotes | This |
T462 | 251-261 | NN | denotes | phenomenon |
T463 | 262-264 | IN | denotes | of |
T464 | 265-271 | JJ | denotes | immune |
T465 | 272-279 | NN | denotes | evasion |
T466 | 280-282 | IN | denotes | by |
T467 | 283-292 | JJ | denotes | molecular |
T468 | 293-300 | NN | denotes | mimicry |
T469 | 301-304 | CC | denotes | and |
R425 | T429 | T428 | arg1Of | encoding,both |
R427 | T433 | T429 | arg2Of | sequons,encoding |
R428 | T433 | T430 | arg1Of | sequons,69 |
R429 | T433 | T431 | arg1Of | sequons,N-linked |
R430 | T433 | T432 | arg1Of | sequons,glycan |
R431 | T433 | T434 | arg1Of | sequons,per |
R432 | T436 | T434 | arg2Of | spike,per |
R433 | T436 | T435 | arg1Of | spike,trimeric |
R434 | T436 | T437 | arg1Of | spike,with |
R435 | T438 | T437 | arg2Of | SARS-CoV-2,with |
R436 | T438 | T439 | arg1Of | SARS-CoV-2,containing |
R437 | T441 | T439 | arg2Of | sites,containing |
R438 | T441 | T440 | arg1Of | sites,66 |
R439 | T443 | T442 | arg1Of | modifications,These |
R440 | T445 | T444 | arg1Of | mask,often |
R441 | T443 | T445 | arg1Of | modifications,mask |
R442 | T448 | T445 | arg2Of | epitopes,mask |
R443 | T448 | T446 | arg1Of | epitopes,immunogenic |
R444 | T448 | T447 | arg1Of | epitopes,protein |
R445 | T448 | T449 | arg1Of | epitopes,from |
R446 | T454 | T449 | arg2Of | system,from |
R447 | T454 | T450 | arg1Of | system,the |
R448 | T454 | T451 | arg1Of | system,host |
R449 | T454 | T452 | arg1Of | system,humoral |
R450 | T454 | T453 | arg1Of | system,immune |
R451 | T445 | T455 | arg1Of | mask,by |
R452 | T456 | T455 | arg2Of | occluding,by |
R453 | T443 | T456 | arg1Of | modifications,occluding |
R454 | T457 | T456 | arg2Of | them,occluding |
R455 | T456 | T458 | arg1Of | occluding,with |
R456 | T460 | T458 | arg2Of | glycans16–18,with |
R457 | T460 | T459 | arg1Of | glycans16–18,host-derived |
R458 | T462 | T461 | arg1Of | phenomenon,This |
R459 | T462 | T463 | arg1Of | phenomenon,of |
R460 | T465 | T463 | arg2Of | evasion,of |
R461 | T465 | T464 | arg1Of | evasion,immune |
R462 | T462 | T466 | arg1Of | phenomenon,by |
R463 | T469 | T466 | arg2Of | and,by |
R464 | T468 | T467 | arg1Of | mimicry,molecular |
R465 | T468 | T469 | arg1Of | mimicry,and |
LitCovid-sample-PD-FMA
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T17 | 143-150 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T18 | 182-195 | Body_part | denotes | immune system | http://purl.org/sig/ont/fma/fma9825 |
LitCovid-sample-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T16 | 143-150 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sample-PD-NCBITaxon
Id | Subject | Object | Predicate | Lexical cue | ncbi_taxonomy_id |
---|---|---|---|---|---|
T26 | 68-78 | Species | denotes | SARS-CoV-2 | NCBItxid:2697049 |
T27 | 68-72 | Species | denotes | SARS | NCBItxid:694009 |
LitCovid-sample-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T19 | 100-245 | Sentence | denotes | These modifications often mask immunogenic protein epitopes from the host humoral immune system by occluding them with host-derived glycans16–18. |
LitCovid-sample-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 182-195 | Body_part | denotes | immune system | http://purl.obolibrary.org/obo/UBERON_0002405 |
LitCovid-sample-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T16 | 68-78 | Disease | denotes | SARS-CoV-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T17 | 68-72 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-sample-Pubtator
Id | Subject | Object | Predicate | Lexical cue | pubann:denotes |
---|---|---|---|---|---|
119 | 20-35 | Chemical | denotes | N-linked glycan | |
112 | 57-62 | Gene | denotes | spike | Gene:43740568 |
115 | 68-78 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
120 | 232-239 | Chemical | denotes | glycans | MESH:D011134 |
LitCovid-sample-PD-GO-BP-0
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12 | 265-279 | http://purl.obolibrary.org/obo/GO_0020012 | denotes | immune evasion |
T13 | 265-279 | http://purl.obolibrary.org/obo/GO_0051805 | denotes | immune evasion |
LitCovid-sample-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11 | 265-279 | http://purl.obolibrary.org/obo/GO_0042783 | denotes | immune evasion |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12 | 265-279 | http://purl.obolibrary.org/obo/GO_0042783 | denotes | immune evasion |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T19 | 100-245 | Sentence | denotes | These modifications often mask immunogenic protein epitopes from the host humoral immune system by occluding them with host-derived glycans16–18. |