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PMC:7253482 / 2777-3081 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
112 57-62 Gene denotes spike Gene:43740568
115 68-78 Species denotes SARS-CoV-2 Tax:2697049
119 20-35 Chemical denotes N-linked glycan
120 232-239 Chemical denotes glycans MESH:D011134

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T17 143-150 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T18 182-195 Body_part denotes immune system http://purl.org/sig/ont/fma/fma9825

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 182-195 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T16 68-76 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 68-72 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T20 182-195 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system
T21 242-244 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T17 143-150 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T14 93-98 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T15 169-173 http://purl.obolibrary.org/obo/IDO_0000531 denotes host
T16 219-223 http://purl.obolibrary.org/obo/IDO_0000531 denotes host

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T428 3-7 CC denotes both
T429 8-16 VBG denotes encoding
T430 17-19 CD denotes 69
T431 20-28 JJ denotes N-linked
T432 29-35 NN denotes glycan
T433 36-43 NNS denotes sequons
T434 44-47 IN denotes per
T435 48-56 JJ denotes trimeric
T436 57-62 NN denotes spike
T437 63-67 IN denotes with
T438 68-78 NN denotes SARS-CoV-2
T439 79-89 VBG denotes containing
T440 90-92 CD denotes 66
T441 93-98 NNS denotes sites
T442 100-105 DT denotes These
T443 106-119 NNS denotes modifications
T444 120-125 RB denotes often
T445 126-130 VBP denotes mask
T446 131-142 JJ denotes immunogenic
T447 143-150 NN denotes protein
T448 151-159 NNS denotes epitopes
T449 160-164 IN denotes from
T450 165-168 DT denotes the
T451 169-173 NN denotes host
T452 174-181 JJ denotes humoral
T453 182-188 JJ denotes immune
T454 189-195 NN denotes system
T455 196-198 IN denotes by
T456 199-208 VBG denotes occluding
T457 209-213 PRP denotes them
T458 214-218 IN denotes with
T459 219-231 JJ denotes host-derived
T460 232-244 NN denotes glycans16–18
T461 246-250 DT denotes This
T462 251-261 NN denotes phenomenon
T463 262-264 IN denotes of
T464 265-271 JJ denotes immune
T465 272-279 NN denotes evasion
T466 280-282 IN denotes by
T467 283-292 JJ denotes molecular
T468 293-300 NN denotes mimicry
T469 301-304 CC denotes and
R425 T429 T428 arg1Of encoding,both
R427 T433 T429 arg2Of sequons,encoding
R428 T433 T430 arg1Of sequons,69
R429 T433 T431 arg1Of sequons,N-linked
R430 T433 T432 arg1Of sequons,glycan
R431 T433 T434 arg1Of sequons,per
R432 T436 T434 arg2Of spike,per
R433 T436 T435 arg1Of spike,trimeric
R434 T436 T437 arg1Of spike,with
R435 T438 T437 arg2Of SARS-CoV-2,with
R436 T438 T439 arg1Of SARS-CoV-2,containing
R437 T441 T439 arg2Of sites,containing
R438 T441 T440 arg1Of sites,66
R439 T443 T442 arg1Of modifications,These
R440 T445 T444 arg1Of mask,often
R441 T443 T445 arg1Of modifications,mask
R442 T448 T445 arg2Of epitopes,mask
R443 T448 T446 arg1Of epitopes,immunogenic
R444 T448 T447 arg1Of epitopes,protein
R445 T448 T449 arg1Of epitopes,from
R446 T454 T449 arg2Of system,from
R447 T454 T450 arg1Of system,the
R448 T454 T451 arg1Of system,host
R449 T454 T452 arg1Of system,humoral
R450 T454 T453 arg1Of system,immune
R451 T445 T455 arg1Of mask,by
R452 T456 T455 arg2Of occluding,by
R453 T443 T456 arg1Of modifications,occluding
R454 T457 T456 arg2Of them,occluding
R455 T456 T458 arg1Of occluding,with
R456 T460 T458 arg2Of glycans16–18,with
R457 T460 T459 arg1Of glycans16–18,host-derived
R458 T462 T461 arg1Of phenomenon,This
R459 T462 T463 arg1Of phenomenon,of
R460 T465 T463 arg2Of evasion,of
R461 T465 T464 arg1Of evasion,immune
R462 T462 T466 arg1Of phenomenon,by
R463 T469 T466 arg2Of and,by
R464 T468 T467 arg1Of mimicry,molecular
R465 T468 T469 arg1Of mimicry,and

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T17 143-150 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T18 182-195 Body_part denotes immune system http://purl.org/sig/ont/fma/fma9825

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T16 143-150 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T26 68-78 Species denotes SARS-CoV-2 NCBItxid:2697049
T27 68-72 Species denotes SARS NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T19 100-245 Sentence denotes These modifications often mask immunogenic protein epitopes from the host humoral immune system by occluding them with host-derived glycans16–18.

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 182-195 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T16 68-78 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T17 68-72 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
119 20-35 Chemical denotes N-linked glycan
112 57-62 Gene denotes spike Gene:43740568
115 68-78 Species denotes SARS-CoV-2 Tax:2697049
120 232-239 Chemical denotes glycans MESH:D011134

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T12 265-279 http://purl.obolibrary.org/obo/GO_0020012 denotes immune evasion
T13 265-279 http://purl.obolibrary.org/obo/GO_0051805 denotes immune evasion

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T11 265-279 http://purl.obolibrary.org/obo/GO_0042783 denotes immune evasion

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T12 265-279 http://purl.obolibrary.org/obo/GO_0042783 denotes immune evasion

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T19 100-245 Sentence denotes These modifications often mask immunogenic protein epitopes from the host humoral immune system by occluding them with host-derived glycans16–18.