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PMC:7253482 / 27110-27388 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
864 0-5 Species denotes Human Tax:9606
865 75-84 Species denotes mammalian Tax:9606
868 6-22 Disease denotes embryonic kidney MESH:D007674
869 130-139 Disease denotes SARS MERS MESH:D018352
870 38-45 CellLine denotes HEK293F CVCL:6642

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T151 16-22 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T152 47-52 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T153 151-159 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T8 16-22 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T94 130-134 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T168 0-5 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T169 6-22 http://www.ebi.ac.uk/efo/EFO_0000927 denotes embryonic kidney
T170 23-26 http://purl.obolibrary.org/obo/CLO_0001230 denotes 293
T171 23-26 http://purl.obolibrary.org/obo/CLO_0037237 denotes 293
T172 23-26 http://purl.obolibrary.org/obo/CLO_0050903 denotes 293
T173 23-26 http://purl.obolibrary.org/obo/CLO_0054249 denotes 293
T174 23-26 http://purl.obolibrary.org/obo/CLO_0054250 denotes 293
T175 23-26 http://purl.obolibrary.org/obo/CLO_0054251 denotes 293
T176 23-26 http://purl.obolibrary.org/obo/CLO_0054252 denotes 293
T177 47-52 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T178 101-106 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T179 171-172 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T180 259-260 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T258 151-159 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T259 184-186 Chemical denotes T4 http://purl.obolibrary.org/obo/CHEBI_18332|http://purl.obolibrary.org/obo/CHEBI_75602

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T85 47-52 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T86 236-240 http://purl.obolibrary.org/obo/BFO_0000029 denotes site

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T150 16-22 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T151 47-52 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T152 151-159 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T175 151-159 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T196 0-5 Species denotes Human NCBItxid:9606
T197 85-90 Species denotes codon NCBItxid:79338
T198 130-134 Species denotes SARS NCBItxid:694009
T199 135-139 Species denotes MERS NCBItxid:1335626

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T152 0-278 Sentence denotes Human embryonic kidney 293 Freestyle (HEK293F) cells were transfected with mammalian-codon-optimised genes encoding 2P-stabilised SARS MERS and HKU1 S proteins containing a C-terminal T4 fibritin trimerization domain, an HRV3C cleavage site, an 8xHis-tag and a Twin-Strep-tag41.

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T8 16-22 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T89 130-134 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
864 0-5 Species denotes Human Tax:9606
868 6-22 Disease denotes embryonic kidney MESH:D007674
870 38-45 CellLine denotes HEK293F CVCL:6642
865 75-84 Species denotes mammalian Tax:9606
869 130-139 Disease denotes SARS MERS MESH:D018352

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T5351 6-15 Protein denotes embryonic https://www.uniprot.org/uniprot/P02301
T5352 149-159 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T5385 187-195 Protein denotes fibritin https://www.uniprot.org/uniprot/Q9T0U8|https://www.uniprot.org/uniprot/P10104|https://www.uniprot.org/uniprot/O10628

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T5 16-22 http://purl.obolibrary.org/obo/MAT_0000119 denotes kidney

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T152 0-278 Sentence denotes Human embryonic kidney 293 Freestyle (HEK293F) cells were transfected with mammalian-codon-optimised genes encoding 2P-stabilised SARS MERS and HKU1 S proteins containing a C-terminal T4 fibritin trimerization domain, an HRV3C cleavage site, an 8xHis-tag and a Twin-Strep-tag41.