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PMC:7253482 / 2642-2876 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
112 192-197 Gene denotes spike Gene:43740568
114 0-3 Species denotes CoV Tax:11118
115 203-213 Species denotes SARS-CoV-2 Tax:2697049
119 155-170 Chemical denotes N-linked glycan
124 108-112 Disease denotes SARS MESH:D045169
125 117-121 Disease denotes MERS MESH:D018352

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T14 6-14 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T15 52-60 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T16 124-137 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T15 108-112 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T16 203-211 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 203-207 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T14 6-14 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T15 52-60 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T16 124-137 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T14 228-233 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T404 0-3 NN denotes CoV
T405 4-5 NN denotes S
T406 6-14 NNS denotes proteins
T407 15-18 VBP denotes are
T408 19-22 DT denotes the
T409 23-30 JJS denotes largest
T410 31-36 NN denotes class
T411 37-38 CD denotes I
T412 39-44 JJ denotes viral
T413 45-51 NN denotes fusion
T414 52-60 NNS denotes proteins
T415 61-67 NN denotes known9
T416 67-68 -COMMA- denotes ,
T417 69-72 CC denotes and
T418 73-76 VBP denotes are
T419 77-88 RB denotes extensively
T420 89-101 VBN denotes glycosylated
T421 101-102 -COMMA- denotes ,
T422 103-107 IN denotes with
T423 108-112 NNP denotes SARS
T424 113-116 CC denotes and
T425 117-121 NNP denotes MERS
T426 122-123 NN denotes S
T427 124-137 NNS denotes glycoproteins
T428 138-142 CC denotes both
T429 143-151 VBG denotes encoding
T430 152-154 CD denotes 69
T431 155-163 JJ denotes N-linked
T432 164-170 NN denotes glycan
T433 171-178 NNS denotes sequons
T434 179-182 IN denotes per
T435 183-191 JJ denotes trimeric
T436 192-197 NN denotes spike
T437 198-202 IN denotes with
T438 203-213 NN denotes SARS-CoV-2
T439 214-224 VBG denotes containing
T440 225-227 CD denotes 66
T441 228-233 NNS denotes sites
R399 T406 T404 arg1Of proteins,CoV
R400 T406 T405 arg1Of proteins,S
R401 T406 T407 arg1Of proteins,are
R402 T415 T407 arg2Of known9,are
R403 T415 T408 arg1Of known9,the
R404 T415 T409 arg1Of known9,largest
R405 T415 T410 arg1Of known9,class
R406 T415 T411 arg1Of known9,I
R407 T415 T412 arg1Of known9,viral
R408 T415 T413 arg1Of known9,fusion
R409 T415 T414 arg1Of known9,proteins
R410 T417 T416 arg1Of and,","
R411 T407 T417 arg1Of are,and
R412 T420 T417 arg2Of glycosylated,and
R413 T406 T418 arg1Of proteins,are
R414 T420 T418 arg2Of glycosylated,are
R415 T420 T419 arg1Of glycosylated,extensively
R416 T406 T420 arg2Of proteins,glycosylated
R417 T420 T421 arg1Of glycosylated,","
R418 T420 T422 arg1Of glycosylated,with
R419 T427 T422 arg2Of glycoproteins,with
R420 T427 T423 arg1Of glycoproteins,SARS
R421 T423 T424 arg1Of SARS,and
R422 T425 T424 arg2Of MERS,and
R423 T427 T425 arg1Of glycoproteins,MERS
R424 T427 T426 arg1Of glycoproteins,S
R425 T429 T428 arg1Of encoding,both
R426 T427 T429 arg1Of glycoproteins,encoding
R427 T433 T429 arg2Of sequons,encoding
R428 T433 T430 arg1Of sequons,69
R429 T433 T431 arg1Of sequons,N-linked
R430 T433 T432 arg1Of sequons,glycan
R431 T433 T434 arg1Of sequons,per
R432 T436 T434 arg2Of spike,per
R433 T436 T435 arg1Of spike,trimeric
R434 T436 T437 arg1Of spike,with
R435 T438 T437 arg2Of SARS-CoV-2,with
R436 T438 T439 arg1Of SARS-CoV-2,containing
R437 T441 T439 arg2Of sites,containing
R438 T441 T440 arg1Of sites,66

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T14 6-14 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T15 52-60 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T16 124-137 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T13 6-14 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T14 52-60 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T15 124-137 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T24 108-112 Species denotes SARS NCBItxid:694009
T25 117-121 Species denotes MERS NCBItxid:1335626
T26 203-213 Species denotes SARS-CoV-2 NCBItxid:2697049
T27 203-207 Species denotes SARS NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T18 0-234 Sentence denotes CoV S proteins are the largest class I viral fusion proteins known9, and are extensively glycosylated, with SARS and MERS S glycoproteins both encoding 69 N-linked glycan sequons per trimeric spike with SARS-CoV-2 containing 66 sites.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T15 108-112 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T16 203-213 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T17 203-207 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
114 0-3 Species denotes CoV Tax:11118
124 108-112 Disease denotes SARS MESH:D045169
125 117-121 Disease denotes MERS MESH:D018352
119 155-170 Chemical denotes N-linked glycan
112 192-197 Gene denotes spike Gene:43740568
115 203-213 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T808 4-14 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T841 122-137 Protein denotes S glycoproteins https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T18 0-234 Sentence denotes CoV S proteins are the largest class I viral fusion proteins known9, and are extensively glycosylated, with SARS and MERS S glycoproteins both encoding 69 N-linked glycan sequons per trimeric spike with SARS-CoV-2 containing 66 sites.