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PMC:7253482 / 2300-3291 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
103 196-218 Gene denotes dipeptidyl-peptidase 4 Gene:1803
104 220-224 Gene denotes DPP4 Gene:1803
105 274-305 Gene denotes angiotensin-converting enzyme 2 Gene:59272
106 307-311 Gene denotes ACE2 Gene:59272
107 875-891 Gene denotes envelope protein Gene:64006
108 893-896 Gene denotes Env Gene:64006
109 981-984 Gene denotes GPC Gene:2995
110 242-243 Gene denotes S Gene:43740568
111 185-186 Gene denotes S Gene:43740568
112 534-539 Gene denotes spike Gene:43740568
113 250-260 Species denotes SARS-CoV-2 Tax:2697049
114 342-345 Species denotes CoV Tax:11118
115 545-555 Species denotes SARS-CoV-2 Tax:2697049
116 869-874 Species denotes HIV-1 Tax:11676
117 942-953 Species denotes Lassa virus Tax:11620
118 904-913 Species denotes influenza Tax:11320
119 497-512 Chemical denotes N-linked glycan
120 709-716 Chemical denotes glycans MESH:D011134
121 782-788 Chemical denotes glycan MESH:D011134
122 180-184 Disease denotes MERS MESH:D018352
123 237-241 Disease denotes SARS MESH:D045169
124 450-454 Disease denotes SARS MESH:D045169
125 459-463 Disease denotes MERS MESH:D018352

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T11 17-25 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T12 39-43 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T13 114-118 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T14 348-356 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T15 394-402 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T16 466-479 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T17 620-627 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T18 659-672 Body_part denotes immune system http://purl.org/sig/ont/fma/fma9825
T19 846-859 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T20 869-872 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T21 884-891 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T22 954-966 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 659-672 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T12 237-241 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T13 250-258 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 250-254 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T15 450-454 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T16 545-553 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 545-549 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T18 904-913 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T12 39-43 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T13 59-61 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T14 66-68 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T15 66-68 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T16 114-118 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T17 145-153 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T18 176-178 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T19 316-317 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 659-672 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system
T21 719-721 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T22 799-802 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T23 948-953 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T11 17-25 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T12 66-68 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T13 274-285 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T14 348-356 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T15 394-402 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T16 466-479 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T17 620-627 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T18 846-859 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T19 884-891 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T20 929-931 Chemical denotes HA http://purl.obolibrary.org/obo/CHEBI_73924
T21 954-966 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T1 274-303 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes angiotensin-converting enzyme http://purl.bioontology.org/ontology/MEDDRA/10050289

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T9 34-38 http://purl.obolibrary.org/obo/IDO_0000531 denotes host
T10 39-43 http://purl.obolibrary.org/obo/CL_0000000 denotes cell
T11 109-113 http://purl.obolibrary.org/obo/IDO_0000531 denotes host
T12 114-118 http://purl.obolibrary.org/obo/CL_0000000 denotes cell
T13 318-322 http://purl.obolibrary.org/obo/IDO_0000531 denotes host
T14 570-575 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T15 646-650 http://purl.obolibrary.org/obo/IDO_0000531 denotes host
T16 696-700 http://purl.obolibrary.org/obo/IDO_0000531 denotes host
T17 948-953 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T350 0-5 DT denotes These
T351 6-14 JJ denotes trimeric
T352 15-16 NN denotes S
T353 17-25 NNS denotes proteins
T354 26-33 VBP denotes mediate
T355 34-43 JJ denotes host-cell
T356 44-49 NN denotes entry
T357 50-54 IN denotes with
T358 55-58 DT denotes the
T359 59-61 NN denotes S1
T360 62-65 CC denotes and
T361 66-68 NN denotes S2
T362 69-77 NNS denotes subunits
T363 78-89 JJ denotes responsible
T364 90-93 IN denotes for
T365 94-101 VBG denotes binding
T366 102-104 TO denotes to
T367 105-108 DT denotes the
T368 109-118 NN denotes host-cell
T369 119-127 NN denotes receptor
T370 128-131 CC denotes and
T371 132-144 VBG denotes facilitating
T372 145-153 NN denotes membrane
T373 154-160 NN denotes fusion
T374 160-161 -COMMA- denotes ,
T375 162-178 NN denotes respectively9–11
T376 180-184 NNS denotes MERS
T377 185-186 NN denotes S
T378 187-192 VBZ denotes binds
T379 193-195 TO denotes to
T380 196-216 NN denotes dipeptidyl-peptidase
T381 217-218 CD denotes 4
T382 219-220 -LRB- denotes (
T383 220-224 NN denotes DPP4
T384 224-225 -RRB- denotes )
T385 225-227 CD denotes 12
T386 227-228 -COMMA- denotes ,
T387 229-236 IN denotes whereas
T388 237-241 NN denotes SARS
T389 242-245 NN denotes S13
T390 246-249 CC denotes and
T391 250-265 NN denotes SARS-CoV-214,15
T392 266-273 VBP denotes utilize
T393 274-296 JJ denotes angiotensin-converting
T394 297-303 NN denotes enzyme
T395 304-305 CD denotes 2
T396 306-307 -LRB- denotes (
T397 307-311 NN denotes ACE2
T398 311-312 -RRB- denotes )
T399 313-315 IN denotes as
T400 316-317 DT denotes a
T401 318-322 NN denotes host
T402 323-331 JJ denotes cellular
T403 332-340 NN denotes receptor
T404 342-345 NN denotes CoV
T405 346-347 NN denotes S
T406 348-356 NNS denotes proteins
T407 357-360 VBP denotes are
T408 361-364 DT denotes the
T409 365-372 JJS denotes largest
T410 373-378 NN denotes class
T411 379-380 CD denotes I
T412 381-386 JJ denotes viral
T413 387-393 NN denotes fusion
T414 394-402 NNS denotes proteins
T415 403-409 NN denotes known9
T416 409-410 -COMMA- denotes ,
T417 411-414 CC denotes and
T418 415-418 VBP denotes are
T419 419-430 RB denotes extensively
T420 431-443 VBN denotes glycosylated
T421 443-444 -COMMA- denotes ,
T422 445-449 IN denotes with
T423 450-454 NNP denotes SARS
T424 455-458 CC denotes and
T425 459-463 NNP denotes MERS
T426 464-465 NN denotes S
T427 466-479 NNS denotes glycoproteins
T428 480-484 CC denotes both
T429 485-493 VBG denotes encoding
T430 494-496 CD denotes 69
T431 497-505 JJ denotes N-linked
T432 506-512 NN denotes glycan
T433 513-520 NNS denotes sequons
T434 521-524 IN denotes per
T435 525-533 JJ denotes trimeric
T436 534-539 NN denotes spike
T437 540-544 IN denotes with
T438 545-555 NN denotes SARS-CoV-2
T439 556-566 VBG denotes containing
T440 567-569 CD denotes 66
T441 570-575 NNS denotes sites
T442 577-582 DT denotes These
T443 583-596 NNS denotes modifications
T444 597-602 RB denotes often
T445 603-607 VBP denotes mask
T446 608-619 JJ denotes immunogenic
T447 620-627 NN denotes protein
T448 628-636 NNS denotes epitopes
T449 637-641 IN denotes from
T450 642-645 DT denotes the
T451 646-650 NN denotes host
T452 651-658 JJ denotes humoral
T453 659-665 JJ denotes immune
T454 666-672 NN denotes system
T455 673-675 IN denotes by
T456 676-685 VBG denotes occluding
T457 686-690 PRP denotes them
T458 691-695 IN denotes with
T459 696-708 JJ denotes host-derived
T460 709-721 NN denotes glycans16–18
T461 723-727 DT denotes This
T462 728-738 NN denotes phenomenon
T463 739-741 IN denotes of
T464 742-748 JJ denotes immune
T465 749-756 NN denotes evasion
T466 757-759 IN denotes by
T467 760-769 JJ denotes molecular
T468 770-777 NN denotes mimicry
T469 778-781 CC denotes and
T470 782-788 NN denotes glycan
T471 789-798 NN denotes shielding
T472 799-802 VBZ denotes has
T473 803-807 VBN denotes been
T474 808-812 RB denotes well
T475 813-826 VBN denotes characterised
T476 827-833 IN denotes across
T477 834-839 JJ denotes other
T478 840-845 JJ denotes viral
T479 846-859 NNS denotes glycoproteins
T480 859-860 -COMMA- denotes ,
T481 861-865 JJ denotes such
T482 866-868 IN denotes as
T483 869-874 NN denotes HIV-1
T484 875-883 NN denotes envelope
T485 884-891 NN denotes protein
T486 892-893 -LRB- denotes (
T487 893-896 NN denotes Env
T488 896-897 -RRB- denotes )
T489 897-902 CD denotes 19–21
T490 902-903 -COMMA- denotes ,
T491 904-913 NN denotes influenza
T492 914-927 NN denotes hemagglutinin
T493 928-929 -LRB- denotes (
T494 929-931 NN denotes HA
T495 931-932 -RRB- denotes )
T496 932-937 CD denotes 22,23
T497 938-941 CC denotes and
T498 942-947 NNP denotes Lassa
T499 948-953 NN denotes virus
T500 954-966 NN denotes glycoprotein
T501 967-974 NN denotes complex
T502 975-976 -LRB- denotes (
T503 976-980 NN denotes LASV
T504 981-984 NN denotes GPC
T505 984-985 -RRB- denotes )
T506 985-990 CD denotes 24–26
R346 T353 T350 arg1Of proteins,These
R347 T353 T351 arg1Of proteins,trimeric
R348 T353 T352 arg1Of proteins,S
R349 T353 T354 arg1Of proteins,mediate
R350 T356 T354 arg2Of entry,mediate
R351 T356 T355 arg1Of entry,host-cell
R352 T354 T357 arg1Of mediate,with
R353 T362 T357 arg2Of subunits,with
R354 T362 T358 arg1Of subunits,the
R355 T362 T359 arg1Of subunits,S1
R356 T359 T360 arg1Of S1,and
R357 T361 T360 arg2Of S2,and
R358 T362 T361 arg1Of subunits,S2
R359 T362 T363 arg1Of subunits,responsible
R360 T363 T364 arg1Of responsible,for
R361 T370 T364 arg2Of and,for
R362 T365 T366 arg1Of binding,to
R363 T369 T366 arg2Of receptor,to
R364 T369 T367 arg1Of receptor,the
R365 T369 T368 arg1Of receptor,host-cell
R366 T365 T370 arg1Of binding,and
R367 T371 T370 arg2Of facilitating,and
R368 T373 T371 arg2Of fusion,facilitating
R369 T373 T372 arg1Of fusion,membrane
R370 T362 T374 arg1Of subunits,","
R371 T375 T374 arg2Of respectively9–11,","
R372 T377 T376 arg1Of S,MERS
R373 T377 T378 arg1Of S,binds
R374 T378 T379 arg1Of binds,to
R375 T380 T379 arg2Of dipeptidyl-peptidase,to
R376 T380 T381 arg1Of dipeptidyl-peptidase,4
R377 T380 T382 arg1Of dipeptidyl-peptidase,(
R378 T383 T382 arg2Of DPP4,(
R379 T384 T382 arg3Of ),(
R380 T380 T385 arg1Of dipeptidyl-peptidase,12
R381 T378 T386 arg1Of binds,","
R382 T378 T387 arg1Of binds,whereas
R383 T392 T387 arg2Of utilize,whereas
R384 T389 T388 arg1Of S13,SARS
R385 T389 T390 arg1Of S13,and
R386 T391 T390 arg2Of "SARS-CoV-214,15",and
R387 T390 T392 arg1Of and,utilize
R388 T394 T392 arg2Of enzyme,utilize
R389 T394 T393 arg1Of enzyme,angiotensin-converting
R390 T394 T395 arg1Of enzyme,2
R391 T394 T396 arg1Of enzyme,(
R392 T397 T396 arg2Of ACE2,(
R393 T398 T396 arg3Of ),(
R394 T392 T399 arg1Of utilize,as
R395 T403 T399 arg2Of receptor,as
R396 T403 T400 arg1Of receptor,a
R397 T403 T401 arg1Of receptor,host
R398 T403 T402 arg1Of receptor,cellular
R399 T406 T404 arg1Of proteins,CoV
R400 T406 T405 arg1Of proteins,S
R401 T406 T407 arg1Of proteins,are
R402 T415 T407 arg2Of known9,are
R403 T415 T408 arg1Of known9,the
R404 T415 T409 arg1Of known9,largest
R405 T415 T410 arg1Of known9,class
R406 T415 T411 arg1Of known9,I
R407 T415 T412 arg1Of known9,viral
R408 T415 T413 arg1Of known9,fusion
R409 T415 T414 arg1Of known9,proteins
R410 T417 T416 arg1Of and,","
R411 T407 T417 arg1Of are,and
R412 T420 T417 arg2Of glycosylated,and
R413 T406 T418 arg1Of proteins,are
R414 T420 T418 arg2Of glycosylated,are
R415 T420 T419 arg1Of glycosylated,extensively
R416 T406 T420 arg2Of proteins,glycosylated
R417 T420 T421 arg1Of glycosylated,","
R418 T420 T422 arg1Of glycosylated,with
R419 T427 T422 arg2Of glycoproteins,with
R420 T427 T423 arg1Of glycoproteins,SARS
R421 T423 T424 arg1Of SARS,and
R422 T425 T424 arg2Of MERS,and
R423 T427 T425 arg1Of glycoproteins,MERS
R424 T427 T426 arg1Of glycoproteins,S
R425 T429 T428 arg1Of encoding,both
R426 T427 T429 arg1Of glycoproteins,encoding
R427 T433 T429 arg2Of sequons,encoding
R428 T433 T430 arg1Of sequons,69
R429 T433 T431 arg1Of sequons,N-linked
R430 T433 T432 arg1Of sequons,glycan
R431 T433 T434 arg1Of sequons,per
R432 T436 T434 arg2Of spike,per
R433 T436 T435 arg1Of spike,trimeric
R434 T436 T437 arg1Of spike,with
R435 T438 T437 arg2Of SARS-CoV-2,with
R436 T438 T439 arg1Of SARS-CoV-2,containing
R437 T441 T439 arg2Of sites,containing
R438 T441 T440 arg1Of sites,66
R439 T443 T442 arg1Of modifications,These
R440 T445 T444 arg1Of mask,often
R441 T443 T445 arg1Of modifications,mask
R442 T448 T445 arg2Of epitopes,mask
R443 T448 T446 arg1Of epitopes,immunogenic
R444 T448 T447 arg1Of epitopes,protein
R445 T448 T449 arg1Of epitopes,from
R446 T454 T449 arg2Of system,from
R447 T454 T450 arg1Of system,the
R448 T454 T451 arg1Of system,host
R449 T454 T452 arg1Of system,humoral
R450 T454 T453 arg1Of system,immune
R451 T445 T455 arg1Of mask,by
R452 T456 T455 arg2Of occluding,by
R453 T443 T456 arg1Of modifications,occluding
R454 T457 T456 arg2Of them,occluding
R455 T456 T458 arg1Of occluding,with
R456 T460 T458 arg2Of glycans16–18,with
R457 T460 T459 arg1Of glycans16–18,host-derived
R458 T462 T461 arg1Of phenomenon,This
R459 T462 T463 arg1Of phenomenon,of
R460 T465 T463 arg2Of evasion,of
R461 T465 T464 arg1Of evasion,immune
R462 T462 T466 arg1Of phenomenon,by
R463 T469 T466 arg2Of and,by
R464 T468 T467 arg1Of mimicry,molecular
R465 T468 T469 arg1Of mimicry,and
R466 T471 T469 arg2Of shielding,and
R467 T471 T470 arg1Of shielding,glycan
R468 T462 T472 arg1Of phenomenon,has
R469 T475 T472 arg2Of characterised,has
R470 T462 T473 arg1Of phenomenon,been
R471 T475 T473 arg2Of characterised,been
R472 T475 T474 arg1Of characterised,well
R473 T462 T475 arg2Of phenomenon,characterised
R474 T475 T476 arg1Of characterised,across
R475 T479 T476 arg2Of glycoproteins,across
R476 T479 T477 arg1Of glycoproteins,other
R477 T479 T478 arg1Of glycoproteins,viral
R478 T479 T480 arg1Of glycoproteins,","
R479 T482 T481 arg1Of as,such
R480 T479 T482 arg1Of glycoproteins,as
R481 T497 T482 arg2Of and,as
R482 T485 T483 arg1Of protein,HIV-1
R483 T485 T484 arg1Of protein,envelope
R484 T492 T485 arg1Of hemagglutinin,protein
R485 T485 T486 arg1Of protein,(
R486 T487 T486 arg2Of Env,(
R487 T488 T486 arg3Of ),(
R488 T485 T489 arg1Of protein,19–21
R489 T485 T490 arg1Of protein,","
R490 T491 T490 arg2Of influenza,","
R491 T492 T491 arg1Of hemagglutinin,influenza
R492 T492 T493 arg1Of hemagglutinin,(
R493 T494 T493 arg2Of HA,(
R494 T495 T493 arg3Of ),(
R495 T492 T496 arg1Of hemagglutinin,"22,23"
R496 T492 T497 arg1Of hemagglutinin,and
R497 T501 T497 arg2Of complex,and
R498 T501 T498 arg1Of complex,Lassa
R499 T501 T499 arg1Of complex,virus
R500 T501 T500 arg1Of complex,glycoprotein
R501 T501 T502 arg1Of complex,(
R502 T504 T502 arg2Of GPC,(
R503 T505 T502 arg3Of ),(
R504 T504 T503 arg1Of GPC,LASV
R505 T501 T506 arg1Of complex,24–26

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T11 17-25 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T12 39-43 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T13 114-118 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T14 348-356 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T15 394-402 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T16 466-479 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T17 620-627 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T18 659-672 Body_part denotes immune system http://purl.org/sig/ont/fma/fma9825
T19 846-859 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T20 869-872 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T21 884-891 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T22 954-966 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T11 17-25 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T12 274-285 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T13 348-356 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T14 394-402 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T15 466-479 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T16 620-627 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T17 846-859 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T18 884-891 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T19 954-966 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T20 180-184 Species denotes MERS NCBItxid:1335626
T21 237-241 Species denotes SARS NCBItxid:694009
T22 250-258 Species denotes SARS-CoV NCBItxid:694009
T23 250-254 Species denotes SARS NCBItxid:694009
T24 450-454 Species denotes SARS NCBItxid:694009
T25 459-463 Species denotes MERS NCBItxid:1335626
T26 545-555 Species denotes SARS-CoV-2 NCBItxid:2697049
T27 545-549 Species denotes SARS NCBItxid:694009
T28 869-874 Species denotes HIV-1 NCBItxid:11676
T29 942-953 Species denotes Lassa virus NCBItxid:11620
T30 976-980 Species denotes LASV NCBItxid:11620

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T16 0-179 Sentence denotes These trimeric S proteins mediate host-cell entry with the S1 and S2 subunits responsible for binding to the host-cell receptor and facilitating membrane fusion, respectively9–11.
T17 180-341 Sentence denotes MERS S binds to dipeptidyl-peptidase 4 (DPP4)12, whereas SARS S13 and SARS-CoV-214,15 utilize angiotensin-converting enzyme 2 (ACE2) as a host cellular receptor.
T18 342-576 Sentence denotes CoV S proteins are the largest class I viral fusion proteins known9, and are extensively glycosylated, with SARS and MERS S glycoproteins both encoding 69 N-linked glycan sequons per trimeric spike with SARS-CoV-2 containing 66 sites.
T19 577-722 Sentence denotes These modifications often mask immunogenic protein epitopes from the host humoral immune system by occluding them with host-derived glycans16–18.
T20 723-991 Sentence denotes This phenomenon of immune evasion by molecular mimicry and glycan shielding has been well characterised across other viral glycoproteins, such as HIV-1 envelope protein (Env)19–21, influenza hemagglutinin (HA)22,23 and Lassa virus glycoprotein complex (LASV GPC)24–26.

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 659-672 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T12 237-241 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T13 250-258 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 250-254 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T15 450-454 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T16 545-555 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T17 545-549 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T18 904-913 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
122 180-184 Disease denotes MERS MESH:D018352
111 185-186 Gene denotes S Gene:43740568
103 196-218 Gene denotes dipeptidyl-peptidase 4 Gene:1803
104 220-224 Gene denotes DPP4 Gene:1803
123 237-241 Disease denotes SARS MESH:D045169
110 242-243 Gene denotes S Gene:43740568
113 250-260 Species denotes SARS-CoV-2 Tax:2697049
105 274-305 Gene denotes angiotensin-converting enzyme 2 Gene:59272
106 307-311 Gene denotes ACE2 Gene:59272
114 342-345 Species denotes CoV Tax:11118
124 450-454 Disease denotes SARS MESH:D045169
125 459-463 Disease denotes MERS MESH:D018352
119 497-512 Chemical denotes N-linked glycan
112 534-539 Gene denotes spike Gene:43740568
115 545-555 Species denotes SARS-CoV-2 Tax:2697049
120 709-716 Chemical denotes glycans MESH:D011134
121 782-788 Chemical denotes glycan MESH:D011134
116 869-874 Species denotes HIV-1 Tax:11676
107 875-891 Gene denotes envelope protein Gene:64006
108 893-896 Gene denotes Env Gene:64006
118 904-913 Species denotes influenza Tax:11320
117 942-953 Species denotes Lassa virus Tax:11620
109 981-984 Gene denotes GPC Gene:2995

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T747 15-25 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T780 196-218 Protein denotes dipeptidyl-peptidase 4 https://www.uniprot.org/uniprot/Q9N2I7|https://www.uniprot.org/uniprot/Q8WMG8|https://www.uniprot.org/uniprot/Q866G2|https://www.uniprot.org/uniprot/Q53TN1|https://www.uniprot.org/uniprot/Q3ZCC2|https://www.uniprot.org/uniprot/Q3U514|https://www.uniprot.org/uniprot/P81425|https://www.uniprot.org/uniprot/P28843|https://www.uniprot.org/uniprot/P27487|https://www.uniprot.org/uniprot/P22411|https://www.uniprot.org/uniprot/P14740
T791 220-224 Protein denotes DPP4 https://www.uniprot.org/uniprot/Q9N2I7
T792 274-305 Protein denotes angiotensin-converting enzyme 2 https://www.uniprot.org/uniprot/Q9UFZ6|https://www.uniprot.org/uniprot/Q9NRA7|https://www.uniprot.org/uniprot/Q9BYF1|https://www.uniprot.org/uniprot/Q99N71|https://www.uniprot.org/uniprot/Q99N70|https://www.uniprot.org/uniprot/Q8R0I0|https://www.uniprot.org/uniprot/Q86WT0|https://www.uniprot.org/uniprot/Q6UWP0|https://www.uniprot.org/uniprot/Q5RFN1|https://www.uniprot.org/uniprot/Q5EGZ1|https://www.uniprot.org/uniprot/Q58DD0|https://www.uniprot.org/uniprot/Q56NL1|https://www.uniprot.org/uniprot/Q56H28|https://www.uniprot.org/uniprot/Q2PGE2|https://www.uniprot.org/uniprot/C7ECU1
T807 307-311 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T808 346-356 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T841 464-479 Protein denotes S glycoproteins https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T940 846-859 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T1025 875-891 Protein denotes envelope protein https://www.uniprot.org/uniprot/P24123|https://www.uniprot.org/uniprot/P0C782|https://www.uniprot.org/uniprot/P0C781|https://www.uniprot.org/uniprot/C1JJY3
T1029 893-896 Protein denotes Env https://www.uniprot.org/uniprot/C1JJY3|https://www.uniprot.org/uniprot/P24123
T1031 914-927 Protein denotes hemagglutinin https://www.uniprot.org/uniprot/Q9YS46|https://www.uniprot.org/uniprot/Q9WNX2|https://www.uniprot.org/uniprot/Q9WFZ1|https://www.uniprot.org/uniprot/Q9WFX3|https://www.uniprot.org/uniprot/Q9WCE8|https://www.uniprot.org/uniprot/Q9WCE3|https://www.uniprot.org/uniprot/Q9WCE1|https://www.uniprot.org/uniprot/Q9WCD9|https://www.uniprot.org/uniprot/Q9WCD8|https://www.uniprot.org/uniprot/Q9WAK5|https://www.uniprot.org/uniprot/Q9WAK4|https://www.uniprot.org/uniprot/Q9WAA0|https://www.uniprot.org/uniprot/Q9WA90|https://www.uniprot.org/uniprot/Q9Q0U6|https://www.uniprot.org/uniprot/Q9PY85|https://www.uniprot.org/uniprot/Q9JF47|https://www.uniprot.org/uniprot/Q9IFF7|https://www.uniprot.org/uniprot/Q9EA20|https://www.uniprot.org/uniprot/Q9E780|https://www.uniprot.org/uniprot/Q998M5|https://www.uniprot.org/uniprot/Q98637|https://www.uniprot.org/uniprot/Q98636|https://www.uniprot.org/uniprot/Q98635|https://www.uniprot.org/uniprot/Q98167|https://www.uniprot.org/uniprot/Q96802|https://www.uniprot.org/uniprot/Q96642|https://www.uniprot.org/uniprot/Q91MA7|https://www.uniprot.org/uniprot/Q91HI9|https://www.uniprot.org/uniprot/Q910M5|https://www.uniprot.org/uniprot/Q86214|https://www.uniprot.org/uniprot/Q86202|https://www.uniprot.org/uniprot/Q86201|https://www.uniprot.org/uniprot/Q86200|https://www.uniprot.org/uniprot/Q86179|https://www.uniprot.org/uniprot/Q86178|https://www.uniprot.org/uniprot/Q86177|https://www.uniprot.org/uniprot/Q86176|https://www.uniprot.org/uniprot/Q86170|https://www.uniprot.org/uniprot/Q85668|https://www.uniprot.org/uniprot/Q85663|https://www.uniprot.org/uniprot/Q84107|https://www.uniprot.org/uniprot/Q84026|https://www.uniprot.org/uniprot/Q84025|https://www.uniprot.org/uniprot/Q84024|https://www.uniprot.org/uniprot/Q84023|https://www.uniprot.org/uniprot/Q84022|https://www.uniprot.org/uniprot/Q84021|https://www.uniprot.org/uniprot/Q84020|https://www.uniprot.org/uniprot/Q84019|https://www.uniprot.org/uniprot/Q84018|https://www.uniprot.org/uniprot/Q84017|https://www.uniprot.org/uniprot/Q84016|https://www.uniprot.org/uniprot/Q84015|https://www.uniprot.org/uniprot/Q84014|https://www.uniprot.org/uniprot/Q84013|https://www.uniprot.org/uniprot/Q84012|https://www.uniprot.org/uniprot/Q84011|https://www.uniprot.org/uniprot/Q84010|https://www.uniprot.org/uniprot/Q84009|https://www.uniprot.org/uniprot/Q84007|https://www.uniprot.org/uniprot/Q84006|https://www.uniprot.org/uniprot/Q84005|https://www.uniprot.org/uniprot/Q84004|https://www.uniprot.org/uniprot/Q84003|https://www.uniprot.org/uniprot/Q84002|https://www.uniprot.org/uniprot/Q84001|https://www.uniprot.org/uniprot/Q84000|https://www.uniprot.org/uniprot/Q83999|https://www.uniprot.org/uniprot/Q83998|https://www.uniprot.org/uniprot/Q83997|https://www.uniprot.org/uniprot/Q83996|https://www.uniprot.org/uniprot/Q83995|https://www.uniprot.org/uniprot/Q83994|https://www.uniprot.org/uniprot/Q83993|https://www.uniprot.org/uniprot/Q83992|https://www.uniprot.org/uniprot/Q83991|https://www.uniprot.org/uniprot/Q83990|https://www.uniprot.org/uniprot/Q83988|https://www.uniprot.org/uniprot/Q83987|https://www.uniprot.org/uniprot/Q83964|https://www.uniprot.org/uniprot/Q83962|https://www.uniprot.org/uniprot/Q83961|https://www.uniprot.org/uniprot/Q83445|https://www.uniprot.org/uniprot/Q83440|https://www.uniprot.org/uniprot/Q82559|https://www.uniprot.org/uniprot/Q82509|https://www.uniprot.org/uniprot/Q82040|https://www.uniprot.org/uniprot/Q80P75|https://www.uniprot.org/uniprot/Q80A30|https://www.uniprot.org/uniprot/Q80A28|https://www.uniprot.org/uniprot/Q80A26|https://www.uniprot.org/uniprot/Q80A22|https://www.uniprot.org/uniprot/Q76ZM3|https://www.uniprot.org/uniprot/Q75Z90|https://www.uniprot.org/uniprot/Q70UN5|https://www.uniprot.org/uniprot/Q70UN4|https://www.uniprot.org/uniprot/Q6TXB8|https://www.uniprot.org/uniprot/Q6PLR4|https://www.uniprot.org/uniprot/Q6LEJ4|https://www.uniprot.org/uniprot/Q6J8F6|https://www.uniprot.org/uniprot/Q6J8E7|https://www.uniprot.org/uniprot/Q6DQ22|https://www.uniprot.org/uniprot/Q6DQ21|https://www.uniprot.org/uniprot/Q6DQ20|https://www.uniprot.org/uniprot/Q6DQ19|https://www.uniprot.org/uniprot/Q6DQ18|https://www.uniprot.org/uniprot/Q6DQ15|https://www.uniprot.org/uniprot/Q6DPZ9|https://www.uniprot.org/uniprot/Q6DME6|https://www.uniprot.org/uniprot/Q67381|https://www.uniprot.org/uniprot/Q67380|https://www.uniprot.org/uniprot/Q67379|https://www.uniprot.org/uniprot/Q67378|https://www.uniprot.org/uniprot/Q67377|https://www.uniprot.org/uniprot/Q67376|https://www.uniprot.org/uniprot/Q67375|https://www.uniprot.org/uniprot/Q67374|https://www.uniprot.org/uniprot/Q67373|https://www.uniprot.org/uniprot/Q67372|https://www.uniprot.org/uniprot/Q67371|https://www.uniprot.org/uniprot/Q67370|https://www.uniprot.org/uniprot/Q67369|https://www.uniprot.org/uniprot/Q67333|https://www.uniprot.org/uniprot/Q67282|https://www.uniprot.org/uniprot/Q67143|https://www.uniprot.org/uniprot/Q67132|https://www.uniprot.org/uniprot/Q67117|https://www.uniprot.org/uniprot/Q67110|https://www.uniprot.org/uniprot/Q67108|https://www.uniprot.org/uniprot/Q67098|https://www.uniprot.org/uniprot/Q67097|https://www.uniprot.org/uniprot/Q67095|https://www.uniprot.org/uniprot/Q67087|https://www.uniprot.org/uniprot/Q67023|https://www.uniprot.org/uniprot/Q67022|https://www.uniprot.org/uniprot/Q67018|https://www.uniprot.org/uniprot/Q65525|https://www.uniprot.org/uniprot/Q463X5|https://www.uniprot.org/uniprot/Q45UF8|https://www.uniprot.org/uniprot/Q3ZK58|https://www.uniprot.org/uniprot/Q3YPZ5|https://www.uniprot.org/uniprot/Q3SBE7|https://www.uniprot.org/uniprot/Q38SQ8|https://www.uniprot.org/uniprot/Q30NQ1|https://www.uniprot.org/uniprot/Q2VNF2|https://www.uniprot.org/uniprot/Q2VND2|https://www.uniprot.org/uniprot/Q2VC96|https://www.uniprot.org/uniprot/Q2RFA5|https://www.uniprot.org/uniprot/Q2RCH5|https://www.uniprot.org/uniprot/Q2MH37|https://www.uniprot.org/uniprot/Q2MH36|https://www.uniprot.org/uniprot/Q2MH35|https://www.uniprot.org/uniprot/Q2ICR0|https://www.uniprot.org/uniprot/Q2F4V2|https://www.uniprot.org/uniprot/Q289M7|https://www.uniprot.org/uniprot/Q288Z6|https://www.uniprot.org/uniprot/Q20PM3|https://www.uniprot.org/uniprot/Q20N38|https://www.uniprot.org/uniprot/Q1WP09|https://www.uniprot.org/uniprot/Q1PUD9|https://www.uniprot.org/uniprot/Q1K9E1|https://www.uniprot.org/uniprot/Q1G0M2|https://www.uniprot.org/uniprot/Q1G0M1|https://www.uniprot.org/uniprot/Q1G0M0|https://www.uniprot.org/uniprot/Q1G0L9|https://www.uniprot.org/uniprot/Q1G0L8|https://www.uniprot.org/uniprot/Q1G0L7|https://www.uniprot.org/uniprot/Q194S8|https://www.uniprot.org/uniprot/Q0PDM6|https://www.uniprot.org/uniprot/Q0PCG7|https://www.uniprot.org/uniprot/Q0HD60|https://www.uniprot.org/uniprot/Q0A465|https://www.uniprot.org/uniprot/Q0A459|https://www.uniprot.org/uniprot/Q0A448|https://www.uniprot.org/uniprot/Q0A437|https://www.uniprot.org/uniprot/Q0A416|https://www.uniprot.org/uniprot/Q0A3Y1|https://www.uniprot.org/uniprot/Q0A3T9|https://www.uniprot.org/uniprot/Q0A2I7|https://www.uniprot.org/uniprot/Q0A2H6|https://www.uniprot.org/uniprot/Q0A2G5|https://www.uniprot.org/uniprot/Q09113|https://www.uniprot.org/uniprot/Q08IH2|https://www.uniprot.org/uniprot/P26101|https://www.uniprot.org/uniprot/P26100|https://www.uniprot.org/uniprot/P26099|https://www.uniprot.org/uniprot/P26098|https://www.uniprot.org/uniprot/P26097|https://www.uniprot.org/uniprot/P26096|https://www.uniprot.org/uniprot/P26095|https://www.uniprot.org/uniprot/P26094|https://www.uniprot.org/uniprot/P25174|https://www.uniprot.org/uniprot/P25173|https://www.uniprot.org/uniprot/P23045|https://www.uniprot.org/uniprot/P22092|https://www.uniprot.org/uniprot/P21284|https://www.uniprot.org/uniprot/P20978|https://www.uniprot.org/uniprot/P19702|https://www.uniprot.org/uniprot/P19701|https://www.uniprot.org/uniprot/P19700|https://www.uniprot.org/uniprot/P19699|https://www.uniprot.org/uniprot/P19698|https://www.uniprot.org/uniprot/P19697|https://www.uniprot.org/uniprot/P19696|https://www.uniprot.org/uniprot/P19695|https://www.uniprot.org/uniprot/P19694|https://www.uniprot.org/uniprot/P19106|https://www.uniprot.org/uniprot/P18880|https://www.uniprot.org/uniprot/P18879|https://www.uniprot.org/uniprot/P18878|https://www.uniprot.org/uniprot/P18877|https://www.uniprot.org/uniprot/P18876|https://www.uniprot.org/uniprot/P18875|https://www.uniprot.org/uniprot/P17504|https://www.uniprot.org/uniprot/P17465|https://www.uniprot.org/uniprot/P17464|https://www.uniprot.org/uniprot/P17463|https://www.uniprot.org/uniprot/P17002|https://www.uniprot.org/uniprot/P17001|https://www.uniprot.org/uniprot/P17000|https://www.uniprot.org/uniprot/P16999|https://www.uniprot.org/uniprot/P16998|https://www.uniprot.org/uniprot/P16997|https://www.uniprot.org/uniprot/P16996|https://www.uniprot.org/uniprot/P16995|https://www.uniprot.org/uniprot/P16994|https://www.uniprot.org/uniprot/P16561|https://www.uniprot.org/uniprot/P16060|https://www.uniprot.org/uniprot/P15658|https://www.uniprot.org/uniprot/P15155|https://www.uniprot.org/uniprot/P13842|https://www.uniprot.org/uniprot/P13103|https://www.uniprot.org/uniprot/P13102|https://www.uniprot.org/uniprot/P13101|https://www.uniprot.org/uniprot/P12976|https://www.uniprot.org/uniprot/P12590|https://www.uniprot.org/uniprot/P12589|https://www.uniprot.org/uniprot/P12588|https://www.uniprot.org/uniprot/P12587|https://www.uniprot.org/uniprot/P12586|https://www.uniprot.org/uniprot/P12585|https://www.uniprot.org/uniprot/P12584|https://www.uniprot.org/uniprot/P12583|https://www.uniprot.org/uniprot/P12582|https://www.uniprot.org/uniprot/P12581|https://www.uniprot.org/uniprot/P12474|https://www.uniprot.org/uniprot/P12473|https://www.uniprot.org/uniprot/P12443|https://www.uniprot.org/uniprot/P12442|https://www.uniprot.org/uniprot/P12441|https://www.uniprot.org/uniprot/P12440|https://www.uniprot.org/uniprot/P12439|https://www.uniprot.org/uniprot/P11201|https://www.uniprot.org/uniprot/P11200|https://www.uniprot.org/uniprot/P11199|https://www.uniprot.org/uniprot/P11198|https://www.uniprot.org/uniprot/P11197|https://www.uniprot.org/uniprot/P11196|https://www.uniprot.org/uniprot/P11195|https://www.uniprot.org/uniprot/P11194|https://www.uniprot.org/uniprot/P11193|https://www.uniprot.org/uniprot/P11135|https://www.uniprot.org/uniprot/P11134|https://www.uniprot.org/uniprot/P11133|https://www.uniprot.org/uniprot/P11132|https://www.uniprot.org/uniprot/P11114|https://www.uniprot.org/uniprot/P10757|https://www.uniprot.org/uniprot/P10448|https://www.uniprot.org/uniprot/P0C6Y9|https://www.uniprot.org/uniprot/P0C6Y8|https://www.uniprot.org/uniprot/P09767|https://www.uniprot.org/uniprot/P09766|https://www.uniprot.org/uniprot/P09765|https://www.uniprot.org/uniprot/P09345|https://www.uniprot.org/uniprot/P09344|https://www.uniprot.org/uniprot/P09343|https://www.uniprot.org/uniprot/Q8QPL1|https://www.uniprot.org/uniprot/Q8JUU5|https://www.uniprot.org/uniprot/Q8JNB4|https://www.uniprot.org/uniprot/Q8JNB1|https://www.uniprot.org/uniprot/Q89793|https://www.uniprot.org/uniprot/Q89470|https://www.uniprot.org/uniprot/Q89182|https://www.uniprot.org/uniprot/Q89120|https://www.uniprot.org/uniprot/Q86229|https://www.uniprot.org/uniprot/Q86227|https://www.uniprot.org/uniprot/Q86221|https://www.uniprot.org/uniprot/Q86215|https://www.uniprot.org/uniprot/P08714|https://www.uniprot.org/uniprot/P08713|https://www.uniprot.org/uniprot/P07977|https://www.uniprot.org/uniprot/P07976|https://www.uniprot.org/uniprot/P07937|https://www.uniprot.org/uniprot/P04664|https://www.uniprot.org/uniprot/P04663|https://www.uniprot.org/uniprot/P04662|https://www.uniprot.org/uniprot/P04661|https://www.uniprot.org/uniprot/P04660|https://www.uniprot.org/uniprot/P04659|https://www.uniprot.org/uniprot/P04508|https://www.uniprot.org/uniprot/P04507|https://www.uniprot.org/uniprot/P04506|https://www.uniprot.org/uniprot/P03528|https://www.uniprot.org/uniprot/P03464|https://www.uniprot.org/uniprot/P03463|https://www.uniprot.org/uniprot/P03462|https://www.uniprot.org/uniprot/P03461|https://www.uniprot.org/uniprot/P03460|https://www.uniprot.org/uniprot/P03459|https://www.uniprot.org/uniprot/P03458|https://www.uniprot.org/uniprot/P03457|https://www.uniprot.org/uniprot/P03456|https://www.uniprot.org/uniprot/P03455|https://www.uniprot.org/uniprot/P03454|https://www.uniprot.org/uniprot/P03453|https://www.uniprot.org/uniprot/P03452|https://www.uniprot.org/uniprot/P03451|https://www.uniprot.org/uniprot/P03450|https://www.uniprot.org/uniprot/P03449|https://www.uniprot.org/uniprot/P03448|https://www.uniprot.org/uniprot/P03447|https://www.uniprot.org/uniprot/P03446|https://www.uniprot.org/uniprot/P03445|https://www.uniprot.org/uniprot/P03444|https://www.uniprot.org/uniprot/P03443|https://www.uniprot.org/uniprot/P03442|https://www.uniprot.org/uniprot/P03441|https://www.uniprot.org/uniprot/P03440|https://www.uniprot.org/uniprot/P03439|https://www.uniprot.org/uniprot/P03438|https://www.uniprot.org/uniprot/P03437|https://www.uniprot.org/uniprot/P03436|https://www.uniprot.org/uniprot/P03435|https://www.uniprot.org/uniprot/O90384|https://www.uniprot.org/uniprot/O89746|https://www.uniprot.org/uniprot/O72737|https://www.uniprot.org/uniprot/O56262|https://www.uniprot.org/uniprot/O56140|https://www.uniprot.org/uniprot/O40676|https://www.uniprot.org/uniprot/O11283|https://www.uniprot.org/uniprot/O10426|https://www.uniprot.org/uniprot/O10425|https://www.uniprot.org/uniprot/O10424|https://www.uniprot.org/uniprot/O09652|https://www.uniprot.org/uniprot/O09651|https://www.uniprot.org/uniprot/B4URD6|https://www.uniprot.org/uniprot/B3SRX5|https://www.uniprot.org/uniprot/B3SRW7|https://www.uniprot.org/uniprot/B3SRV1|https://www.uniprot.org/uniprot/A8C8W3|https://www.uniprot.org/uniprot/A8C8J4|https://www.uniprot.org/uniprot/A4ZY30|https://www.uniprot.org/uniprot/A4ZY26|https://www.uniprot.org/uniprot/A4U7A6|https://www.uniprot.org/uniprot/A4U6V2|https://www.uniprot.org/uniprot/A4K143|https://www.uniprot.org/uniprot/A4GXH4|https://www.uniprot.org/uniprot/A4GCL9|https://www.uniprot.org/uniprot/A4GCK8|https://www.uniprot.org/uniprot/A4GCJ7|https://www.uniprot.org/uniprot/A4GCI6|https://www.uniprot.org/uniprot/A4GCH5|https://www.uniprot.org/uniprot/A4GBX7|https://www.uniprot.org/uniprot/A3DRP0|https://www.uniprot.org/uniprot/A2T3T2|https://www.uniprot.org/uniprot/A2T3M1|https://www.uniprot.org/uniprot/A0PC85|https://www.uniprot.org/uniprot/Q08778|https://www.uniprot.org/uniprot/Q08011|https://www.uniprot.org/uniprot/Q08010|https://www.uniprot.org/uniprot/Q07FI5|https://www.uniprot.org/uniprot/Q07926|https://www.uniprot.org/uniprot/Q07925|https://www.uniprot.org/uniprot/Q07924|https://www.uniprot.org/uniprot/Q07922|https://www.uniprot.org/uniprot/Q07920|https://www.uniprot.org/uniprot/Q07416|https://www.uniprot.org/uniprot/Q06895|https://www.uniprot.org/uniprot/Q06894|https://www.uniprot.org/uniprot/Q05334|https://www.uniprot.org/uniprot/Q04916|https://www.uniprot.org/uniprot/Q03909|https://www.uniprot.org/uniprot/Q02945|https://www.uniprot.org/uniprot/Q01641|https://www.uniprot.org/uniprot/Q01218|https://www.uniprot.org/uniprot/Q00716|https://www.uniprot.org/uniprot/P87506|https://www.uniprot.org/uniprot/P68760|https://www.uniprot.org/uniprot/P68759|https://www.uniprot.org/uniprot/P68758|https://www.uniprot.org/uniprot/P68757|https://www.uniprot.org/uniprot/P68756|https://www.uniprot.org/uniprot/P68755|https://www.uniprot.org/uniprot/P43260|https://www.uniprot.org/uniprot/P43259|https://www.uniprot.org/uniprot/P43258|https://www.uniprot.org/uniprot/P43257|https://www.uniprot.org/uniprot/P39034|https://www.uniprot.org/uniprot/P39033|https://www.uniprot.org/uniprot/P36346|https://www.uniprot.org/uniprot/P36308|https://www.uniprot.org/uniprot/P36307|https://www.uniprot.org/uniprot/P36306|https://www.uniprot.org/uniprot/P36305|https://www.uniprot.org/uniprot/P35746|https://www.uniprot.org/uniprot/P33807|https://www.uniprot.org/uniprot/P30214|https://www.uniprot.org/uniprot/P28731|https://www.uniprot.org/uniprot/P28730|https://www.uniprot.org/uniprot/P26562|https://www.uniprot.org/uniprot/P26451|https://www.uniprot.org/uniprot/P26193|https://www.uniprot.org/uniprot/P26142|https://www.uniprot.org/uniprot/P26141|https://www.uniprot.org/uniprot/P26140|https://www.uniprot.org/uniprot/P26139|https://www.uniprot.org/uniprot/P26138|https://www.uniprot.org/uniprot/P26137|https://www.uniprot.org/uniprot/P26136|https://www.uniprot.org/uniprot/P26135|https://www.uniprot.org/uniprot/P26134|https://www.uniprot.org/uniprot/P26103|https://www.uniprot.org/uniprot/P26102|https://www.uniprot.org/uniprot/B3SRU3|https://www.uniprot.org/uniprot/B3SRS7|https://www.uniprot.org/uniprot/B3SRR9|https://www.uniprot.org/uniprot/B3SRR1|https://www.uniprot.org/uniprot/B3SRQ3|https://www.uniprot.org/uniprot/B3EUQ6|https://www.uniprot.org/uniprot/A9Q1L0
T1461 929-931 Protein denotes HA https://www.uniprot.org/uniprot/Q9YS46
T1462 954-966 Protein denotes glycoprotein https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T1547 981-984 Protein denotes GPC https://www.uniprot.org/uniprot/P03711

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T11 145-160 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion
T12 742-756 http://purl.obolibrary.org/obo/GO_0020012 denotes immune evasion
T13 742-756 http://purl.obolibrary.org/obo/GO_0051805 denotes immune evasion

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T10 145-160 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion
T11 742-756 http://purl.obolibrary.org/obo/GO_0042783 denotes immune evasion

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T11 145-160 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion
T12 742-756 http://purl.obolibrary.org/obo/GO_0042783 denotes immune evasion

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T16 0-179 Sentence denotes These trimeric S proteins mediate host-cell entry with the S1 and S2 subunits responsible for binding to the host-cell receptor and facilitating membrane fusion, respectively9–11.
T17 180-341 Sentence denotes MERS S binds to dipeptidyl-peptidase 4 (DPP4)12, whereas SARS S13 and SARS-CoV-214,15 utilize angiotensin-converting enzyme 2 (ACE2) as a host cellular receptor.
T18 342-576 Sentence denotes CoV S proteins are the largest class I viral fusion proteins known9, and are extensively glycosylated, with SARS and MERS S glycoproteins both encoding 69 N-linked glycan sequons per trimeric spike with SARS-CoV-2 containing 66 sites.
T19 577-722 Sentence denotes These modifications often mask immunogenic protein epitopes from the host humoral immune system by occluding them with host-derived glycans16–18.
T20 723-991 Sentence denotes This phenomenon of immune evasion by molecular mimicry and glycan shielding has been well characterised across other viral glycoproteins, such as HIV-1 envelope protein (Env)19–21, influenza hemagglutinin (HA)22,23 and Lassa virus glycoprotein complex (LASV GPC)24–26.