PMC:7253482 / 22049-22336
Annnotations
LitCovid-PubTator
{"project":"LitCovid-PubTator","denotations":[{"id":"731","span":{"begin":159,"end":162},"obj":"Gene"},{"id":"732","span":{"begin":170,"end":173},"obj":"Gene"},{"id":"733","span":{"begin":233,"end":236},"obj":"Gene"},{"id":"735","span":{"begin":164,"end":169},"obj":"Species"},{"id":"736","span":{"begin":193,"end":197},"obj":"Species"},{"id":"737","span":{"begin":183,"end":192},"obj":"Species"},{"id":"744","span":{"begin":138,"end":142},"obj":"Disease"}],"attributes":[{"id":"A731","pred":"tao:has_database_id","subj":"731","obj":"Gene:2995"},{"id":"A732","pred":"tao:has_database_id","subj":"732","obj":"Gene:64006"},{"id":"A733","pred":"tao:has_database_id","subj":"733","obj":"Gene:64006"},{"id":"A735","pred":"tao:has_database_id","subj":"735","obj":"Tax:11676"},{"id":"A736","pred":"tao:has_database_id","subj":"736","obj":"Tax:119210"},{"id":"A737","pred":"tao:has_database_id","subj":"737","obj":"Tax:11320"},{"id":"A744","pred":"tao:has_database_id","subj":"744","obj":"MESH:D018352"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"densities were calculated using Proteins, Interfaces, Structures and Assemblies (PISA)83 analyses of fully glycosylated models of SARS S, MERS S, HKU1 S, LASV GPC, HIV-1 Env (BG505), Influenza H3N2 hemagglutinin (Victoria 2011), SIV Env (PDB ID 5X58, 5X59, 5I08, 5VK2, 4ZMJ, 4O5N, 6OHY, "}
LitCovid-PD-FMA-UBERON
{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T127","span":{"begin":32,"end":40},"obj":"Body_part"},{"id":"T128","span":{"begin":164,"end":167},"obj":"Body_part"}],"attributes":[{"id":"A127","pred":"fma_id","subj":"T127","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A128","pred":"fma_id","subj":"T128","obj":"http://purl.org/sig/ont/fma/fma278683"}],"text":"densities were calculated using Proteins, Interfaces, Structures and Assemblies (PISA)83 analyses of fully glycosylated models of SARS S, MERS S, HKU1 S, LASV GPC, HIV-1 Env (BG505), Influenza H3N2 hemagglutinin (Victoria 2011), SIV Env (PDB ID 5X58, 5X59, 5I08, 5VK2, 4ZMJ, 4O5N, 6OHY, "}
LitCovid-PD-MONDO
{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T74","span":{"begin":130,"end":134},"obj":"Disease"},{"id":"T75","span":{"begin":183,"end":192},"obj":"Disease"},{"id":"T76","span":{"begin":229,"end":232},"obj":"Disease"}],"attributes":[{"id":"A74","pred":"mondo_id","subj":"T74","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A75","pred":"mondo_id","subj":"T75","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A76","pred":"mondo_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/MONDO_0010029"}],"text":"densities were calculated using Proteins, Interfaces, Structures and Assemblies (PISA)83 analyses of fully glycosylated models of SARS S, MERS S, HKU1 S, LASV GPC, HIV-1 Env (BG505), Influenza H3N2 hemagglutinin (Victoria 2011), SIV Env (PDB ID 5X58, 5X59, 5I08, 5VK2, 4ZMJ, 4O5N, 6OHY, "}
LitCovid-PD-CHEBI
{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T226","span":{"begin":242,"end":244},"obj":"Chemical"}],"attributes":[{"id":"A226","pred":"chebi_id","subj":"T226","obj":"http://purl.obolibrary.org/obo/CHEBI_141439"}],"text":"densities were calculated using Proteins, Interfaces, Structures and Assemblies (PISA)83 analyses of fully glycosylated models of SARS S, MERS S, HKU1 S, LASV GPC, HIV-1 Env (BG505), Influenza H3N2 hemagglutinin (Victoria 2011), SIV Env (PDB ID 5X58, 5X59, 5I08, 5VK2, 4ZMJ, 4O5N, 6OHY, "}
LitCovid-sample-Enju
{"project":"LitCovid-sample-Enju","denotations":[{"id":"T30294","span":{"begin":0,"end":9},"obj":"NNS"},{"id":"T78773","span":{"begin":10,"end":14},"obj":"VBD"},{"id":"T51996","span":{"begin":15,"end":25},"obj":"VBN"},{"id":"T60493","span":{"begin":26,"end":31},"obj":"VBG"},{"id":"T24146","span":{"begin":32,"end":40},"obj":"NNPS"},{"id":"T7451","span":{"begin":40,"end":41},"obj":"-COMMA-"},{"id":"T11968","span":{"begin":42,"end":52},"obj":"NNP"},{"id":"T93687","span":{"begin":52,"end":53},"obj":"-COMMA-"},{"id":"T97859","span":{"begin":54,"end":64},"obj":"NNPS"},{"id":"T31999","span":{"begin":65,"end":68},"obj":"CC"},{"id":"T70602","span":{"begin":69,"end":79},"obj":"NNPS"},{"id":"T67118","span":{"begin":80,"end":81},"obj":"-LRB-"},{"id":"T86788","span":{"begin":81,"end":85},"obj":"NN"},{"id":"T23666","span":{"begin":85,"end":86},"obj":"-RRB-"},{"id":"T93480","span":{"begin":86,"end":88},"obj":"CD"},{"id":"T54925","span":{"begin":89,"end":97},"obj":"NNS"},{"id":"T13544","span":{"begin":98,"end":100},"obj":"IN"},{"id":"T10473","span":{"begin":101,"end":106},"obj":"RB"},{"id":"T95681","span":{"begin":107,"end":119},"obj":"VBN"},{"id":"T46270","span":{"begin":120,"end":126},"obj":"NNS"},{"id":"T25318","span":{"begin":127,"end":129},"obj":"IN"},{"id":"T63214","span":{"begin":130,"end":134},"obj":"NNP"},{"id":"T36278","span":{"begin":135,"end":136},"obj":"NNP"},{"id":"T38160","span":{"begin":136,"end":137},"obj":"-COMMA-"},{"id":"T32901","span":{"begin":138,"end":142},"obj":"NNP"},{"id":"T50082","span":{"begin":143,"end":144},"obj":"NNP"},{"id":"T20315","span":{"begin":144,"end":145},"obj":"-COMMA-"},{"id":"T26336","span":{"begin":146,"end":150},"obj":"NNP"},{"id":"T80637","span":{"begin":151,"end":152},"obj":"NNP"},{"id":"T28124","span":{"begin":152,"end":153},"obj":"-COMMA-"},{"id":"T48490","span":{"begin":154,"end":158},"obj":"NN"},{"id":"T53169","span":{"begin":159,"end":162},"obj":"NN"},{"id":"T70489","span":{"begin":162,"end":163},"obj":"-COMMA-"},{"id":"T36851","span":{"begin":164,"end":169},"obj":"NN"},{"id":"T61005","span":{"begin":170,"end":173},"obj":"NN"},{"id":"T62312","span":{"begin":174,"end":175},"obj":"-LRB-"},{"id":"T36158","span":{"begin":175,"end":180},"obj":"NN"},{"id":"T19207","span":{"begin":180,"end":181},"obj":"-RRB-"},{"id":"T1909","span":{"begin":181,"end":182},"obj":"-COMMA-"},{"id":"T16967","span":{"begin":183,"end":192},"obj":"NN"},{"id":"T17288","span":{"begin":193,"end":197},"obj":"NN"},{"id":"T64807","span":{"begin":198,"end":211},"obj":"NN"},{"id":"T69427","span":{"begin":212,"end":213},"obj":"-LRB-"},{"id":"T33012","span":{"begin":213,"end":221},"obj":"NNP"},{"id":"T31397","span":{"begin":222,"end":226},"obj":"CD"},{"id":"T95304","span":{"begin":226,"end":227},"obj":"-RRB-"},{"id":"T61501","span":{"begin":227,"end":228},"obj":"-COMMA-"},{"id":"T78843","span":{"begin":229,"end":232},"obj":"NN"},{"id":"T53051","span":{"begin":233,"end":236},"obj":"NNP"},{"id":"T95730","span":{"begin":237,"end":238},"obj":"-LRB-"},{"id":"T35725","span":{"begin":238,"end":241},"obj":"NN"},{"id":"T46991","span":{"begin":242,"end":244},"obj":"NN"},{"id":"T12133","span":{"begin":245,"end":249},"obj":"NN"},{"id":"T34645","span":{"begin":249,"end":250},"obj":"-COMMA-"},{"id":"T32072","span":{"begin":251,"end":255},"obj":"NN"},{"id":"T39600","span":{"begin":255,"end":256},"obj":"-COMMA-"},{"id":"T65590","span":{"begin":257,"end":261},"obj":"NN"},{"id":"T19879","span":{"begin":261,"end":262},"obj":"-COMMA-"},{"id":"T61708","span":{"begin":263,"end":267},"obj":"NN"},{"id":"T80173","span":{"begin":267,"end":268},"obj":"-COMMA-"},{"id":"T86385","span":{"begin":269,"end":273},"obj":"NN"},{"id":"T31925","span":{"begin":273,"end":274},"obj":"-COMMA-"},{"id":"T78881","span":{"begin":275,"end":279},"obj":"NN"},{"id":"T64135","span":{"begin":279,"end":280},"obj":"-COMMA-"},{"id":"T30171","span":{"begin":281,"end":285},"obj":"NN"},{"id":"T91114","span":{"begin":285,"end":286},"obj":"-COMMA-"}],"relations":[{"id":"R27948","pred":"arg1Of","subj":"T30294","obj":"T78773"},{"id":"R67688","pred":"arg2Of","subj":"T51996","obj":"T78773"},{"id":"R14706","pred":"arg2Of","subj":"T30294","obj":"T51996"},{"id":"R3845","pred":"arg2Of","subj":"T31999","obj":"T60493"},{"id":"R35026","pred":"modOf","subj":"T51996","obj":"T60493"},{"id":"R91304","pred":"arg1Of","subj":"T24146","obj":"T7451"},{"id":"R83407","pred":"arg2Of","subj":"T11968","obj":"T7451"},{"id":"R33652","pred":"arg1Of","subj":"T7451","obj":"T93687"},{"id":"R12788","pred":"arg2Of","subj":"T97859","obj":"T93687"},{"id":"R85434","pred":"arg1Of","subj":"T93687","obj":"T31999"},{"id":"R49539","pred":"arg2Of","subj":"T70602","obj":"T31999"},{"id":"R85216","pred":"arg1Of","subj":"T70602","obj":"T67118"},{"id":"R11568","pred":"arg2Of","subj":"T86788","obj":"T67118"},{"id":"R19405","pred":"arg3Of","subj":"T23666","obj":"T67118"},{"id":"R16896","pred":"arg1Of","subj":"T54925","obj":"T93480"},{"id":"R80879","pred":"arg1Of","subj":"T60493","obj":"T54925"},{"id":"R82869","pred":"ar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were calculated using Proteins, Interfaces, Structures and Assemblies (PISA)83 analyses of fully glycosylated models of SARS S, MERS S, HKU1 S, LASV GPC, HIV-1 Env (BG505), Influenza H3N2 hemagglutinin (Victoria 2011), SIV Env (PDB ID 5X58, 5X59, 5I08, 5VK2, 4ZMJ, 4O5N, 6OHY, "}
LitCovid-sample-PD-FMA
{"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T126","span":{"begin":32,"end":40},"obj":"Body_part"},{"id":"T127","span":{"begin":164,"end":167},"obj":"Body_part"}],"attributes":[{"id":"A126","pred":"fma_id","subj":"T126","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A127","pred":"fma_id","subj":"T127","obj":"http://purl.org/sig/ont/fma/fma278683"}],"text":"densities were calculated using Proteins, Interfaces, Structures and Assemblies (PISA)83 analyses of fully glycosylated models of SARS S, MERS S, HKU1 S, LASV GPC, HIV-1 Env (BG505), Influenza H3N2 hemagglutinin (Victoria 2011), SIV Env (PDB ID 5X58, 5X59, 5I08, 5VK2, 4ZMJ, 4O5N, 6OHY, "}
LitCovid-sample-PD-NCBITaxon
{"project":"LitCovid-sample-PD-NCBITaxon","denotations":[{"id":"T153","span":{"begin":130,"end":134},"obj":"Species"},{"id":"T154","span":{"begin":138,"end":142},"obj":"Species"},{"id":"T155","span":{"begin":154,"end":158},"obj":"Species"},{"id":"T156","span":{"begin":164,"end":169},"obj":"Species"},{"id":"T157","span":{"begin":193,"end":197},"obj":"Species"},{"id":"T158","span":{"begin":213,"end":221},"obj":"Species"},{"id":"T159","span":{"begin":229,"end":232},"obj":"Species"}],"attributes":[{"id":"A153","pred":"ncbi_taxonomy_id","subj":"T153","obj":"NCBItxid:694009"},{"id":"A154","pred":"ncbi_taxonomy_id","subj":"T154","obj":"NCBItxid:1335626"},{"id":"A155","pred":"ncbi_taxonomy_id","subj":"T155","obj":"NCBItxid:11620"},{"id":"A156","pred":"ncbi_taxonomy_id","subj":"T156","obj":"NCBItxid:11676"},{"id":"A157","pred":"ncbi_taxonomy_id","subj":"T157","obj":"NCBItxid:119210"},{"id":"A158","pred":"ncbi_taxonomy_id","subj":"T158","obj":"NCBItxid:4420"},{"id":"A159","pred":"ncbi_taxonomy_id","subj":"T159","obj":"NCBItxid:11723"}],"namespaces":[{"prefix":"NCBItxid","uri":"http://purl.bioontology.org/ontology/NCBITAXON/"}],"text":"densities were calculated using Proteins, Interfaces, Structures and Assemblies (PISA)83 analyses of fully glycosylated models of SARS S, MERS S, HKU1 S, LASV GPC, HIV-1 Env (BG505), Influenza H3N2 hemagglutinin (Victoria 2011), SIV Env (PDB ID 5X58, 5X59, 5I08, 5VK2, 4ZMJ, 4O5N, 6OHY, "}
LitCovid-sample-PD-MONDO
{"project":"LitCovid-sample-PD-MONDO","denotations":[{"id":"T69","span":{"begin":130,"end":134},"obj":"Disease"},{"id":"T70","span":{"begin":183,"end":192},"obj":"Disease"},{"id":"T71","span":{"begin":229,"end":232},"obj":"Disease"}],"attributes":[{"id":"A69","pred":"mondo_id","subj":"T69","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A70","pred":"mondo_id","subj":"T70","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A71","pred":"mondo_id","subj":"T71","obj":"http://purl.obolibrary.org/obo/MONDO_0010029"}],"text":"densities were calculated using Proteins, Interfaces, Structures and Assemblies (PISA)83 analyses of fully glycosylated models of SARS S, MERS S, HKU1 S, LASV GPC, HIV-1 Env (BG505), Influenza H3N2 hemagglutinin (Victoria 2011), SIV Env (PDB ID 5X58, 5X59, 5I08, 5VK2, 4ZMJ, 4O5N, 6OHY, "}
LitCovid-sample-Pubtator
{"project":"LitCovid-sample-Pubtator","denotations":[{"id":"744","span":{"begin":138,"end":142},"obj":"Disease"},{"id":"731","span":{"begin":159,"end":162},"obj":"Gene"},{"id":"735","span":{"begin":164,"end":169},"obj":"Species"},{"id":"732","span":{"begin":170,"end":173},"obj":"Gene"},{"id":"737","span":{"begin":183,"end":192},"obj":"Species"},{"id":"736","span":{"begin":193,"end":197},"obj":"Species"},{"id":"733","span":{"begin":233,"end":236},"obj":"Gene"}],"attributes":[{"id":"A744","pred":"pubann:denotes","subj":"744","obj":"MESH:D018352"},{"id":"A731","pred":"pubann:denotes","subj":"731","obj":"Gene:2995"},{"id":"A735","pred":"pubann:denotes","subj":"735","obj":"Tax:11676"},{"id":"A732","pred":"pubann:denotes","subj":"732","obj":"Gene:64006"},{"id":"A737","pred":"pubann:denotes","subj":"737","obj":"Tax:11320"},{"id":"A736","pred":"pubann:denotes","subj":"736","obj":"Tax:119210"},{"id":"A733","pred":"pubann:denotes","subj":"733","obj":"Gene:64006"}],"text":"densities were calculated using Proteins, Interfaces, Structures and Assemblies (PISA)83 analyses of fully glycosylated models of SARS S, MERS S, HKU1 S, LASV GPC, HIV-1 Env (BG505), Influenza H3N2 hemagglutinin (Victoria 2011), SIV Env (PDB ID 5X58, 5X59, 5I08, 5VK2, 4ZMJ, 4O5N, 6OHY, "}
LitCovid-sample-UniProt
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were calculated using Proteins, Interfaces, Structures and Assemblies (PISA)83 analyses of fully glycosylated models of SARS S, MERS S, HKU1 S, LASV GPC, HIV-1 Env (BG505), Influenza H3N2 hemagglutinin (Victoria 2011), SIV Env (PDB ID 5X58, 5X59, 5I08, 5VK2, 4ZMJ, 4O5N, 6OHY, "}