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PMC:7253482 / 21961-22945 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
715 25-31 Chemical denotes glycan MESH:D011134
731 247-250 Gene denotes GPC Gene:2995
732 258-261 Gene denotes Env Gene:64006
733 321-324 Gene denotes Env Gene:64006
734 895-898 Gene denotes GPC Gene:2995
735 252-257 Species denotes HIV-1 Tax:11676
736 281-285 Species denotes H3N2 Tax:119210
737 271-280 Species denotes Influenza Tax:11320
738 74-80 Chemical denotes Glycan MESH:D011134
739 403-415 Chemical denotes Oligomannose
740 511-527 Chemical denotes N-linked glycans
741 566-578 Chemical denotes procainamide MESH:D011342
742 651-667 Chemical denotes N-linked glycans
743 780-786 Chemical denotes glycan MESH:D011134
744 226-230 Disease denotes MERS MESH:D018352
745 865-872 CellLine denotes HEK293F CVCL:6642

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T126 64-72 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T127 120-128 Body_part denotes Proteins http://purl.org/sig/ont/fma/fma67257
T128 252-255 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T129 436-449 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T130 614-624 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T131 716-726 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T132 743-755 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T133 813-826 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T134 873-878 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T135 968-974 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T136 978-983 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T5 968-974 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T74 218-222 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T75 271-280 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T76 317-320 Disease denotes SIV http://purl.obolibrary.org/obo/MONDO_0010029

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T126 552-560 http://purl.obolibrary.org/obo/CLO_0007225 denotes labelled
T127 614-633 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino-acid residues
T128 614-633 http://purl.obolibrary.org/obo/PR_000036907 denotes amino-acid residues
T129 716-735 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino-acid residues
T130 716-735 http://purl.obolibrary.org/obo/PR_000036907 denotes amino-acid residues
T131 759-760 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 873-878 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T133 923-928 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T134 968-974 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T135 968-974 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T136 968-974 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T137 978-983 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T224 64-72 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T225 74-80 Chemical denotes Glycan http://purl.obolibrary.org/obo/CHEBI_18154
T226 330-332 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T227 436-449 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T228 520-527 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T229 588-590 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326
T230 614-633 Chemical denotes amino-acid residues http://purl.obolibrary.org/obo/CHEBI_33708
T231 614-619 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T232 620-624 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T233 660-667 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T234 697-704 Chemical denotes solvent http://purl.obolibrary.org/obo/CHEBI_46787
T235 716-735 Chemical denotes amino-acid residues http://purl.obolibrary.org/obo/CHEBI_33708
T236 716-721 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T237 722-726 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T238 743-755 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T239 813-826 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T240 975-977 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T57 873-878 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T58 923-928 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T59 978-983 http://purl.obolibrary.org/obo/CL_0000000 denotes cells

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T60202 0-4 NNP denotes Fig.
T35932 5-6 CD denotes 6
T52424 7-17 NN denotes Comparison
T33530 18-20 IN denotes of
T64406 21-24 DT denotes the
T54237 25-31 NN denotes glycan
T17551 32-39 NNS denotes shields
T16798 40-42 IN denotes of
T41253 43-48 JJ denotes viral
T25202 49-54 NN denotes class
T14464 55-56 CD denotes I
T85420 57-63 NN denotes fusion
T28685 64-72 NNS denotes proteins
T57548 74-80 NN denotes Glycan
T11420 81-87 NN denotes shield
T30294 88-97 NNS denotes densities
T78773 98-102 VBD denotes were
T51996 103-113 VBN denotes calculated
T60493 114-119 VBG denotes using
T24146 120-128 NNPS denotes Proteins
T7451 128-129 -COMMA- denotes ,
T11968 130-140 NNP denotes Interfaces
T93687 140-141 -COMMA- denotes ,
T97859 142-152 NNPS denotes Structures
T31999 153-156 CC denotes and
T70602 157-167 NNPS denotes Assemblies
T67118 168-169 -LRB- denotes (
T86788 169-173 NN denotes PISA
T23666 173-174 -RRB- denotes )
T93480 174-176 CD denotes 83
T54925 177-185 NNS denotes analyses
T13544 186-188 IN denotes of
T10473 189-194 RB denotes fully
T95681 195-207 VBN denotes glycosylated
T46270 208-214 NNS denotes models
T25318 215-217 IN denotes of
T63214 218-222 NNP denotes SARS
T36278 223-224 NNP denotes S
T38160 224-225 -COMMA- denotes ,
T32901 226-230 NNP denotes MERS
T50082 231-232 NNP denotes S
T20315 232-233 -COMMA- denotes ,
T26336 234-238 NNP denotes HKU1
T80637 239-240 NNP denotes S
T28124 240-241 -COMMA- denotes ,
T48490 242-246 NN denotes LASV
T53169 247-250 NN denotes GPC
T70489 250-251 -COMMA- denotes ,
T36851 252-257 NN denotes HIV-1
T61005 258-261 NN denotes Env
T62312 262-263 -LRB- denotes (
T36158 263-268 NN denotes BG505
T19207 268-269 -RRB- denotes )
T1909 269-270 -COMMA- denotes ,
T16967 271-280 NN denotes Influenza
T17288 281-285 NN denotes H3N2
T64807 286-299 NN denotes hemagglutinin
T69427 300-301 -LRB- denotes (
T33012 301-309 NNP denotes Victoria
T31397 310-314 CD denotes 2011
T95304 314-315 -RRB- denotes )
T61501 315-316 -COMMA- denotes ,
T78843 317-320 NN denotes SIV
T53051 321-324 NNP denotes Env
T95730 325-326 -LRB- denotes (
T35725 326-329 NN denotes PDB
T46991 330-332 NN denotes ID
T12133 333-337 NN denotes 5X58
T34645 337-338 -COMMA- denotes ,
T32072 339-343 NN denotes 5X59
T39600 343-344 -COMMA- denotes ,
T65590 345-349 NN denotes 5I08
T19879 349-350 -COMMA- denotes ,
T61708 351-355 NN denotes 5VK2
T80173 355-356 -COMMA- denotes ,
T86385 357-361 NN denotes 4ZMJ
T31925 361-362 -COMMA- denotes ,
T78881 363-367 NN denotes 4O5N
T64135 367-368 -COMMA- denotes ,
T30171 369-373 NN denotes 6OHY
T91114 373-374 -COMMA- denotes ,
T4958 375-387 RB denotes respectively
T39966 387-388 -RRB- denotes )
T89368 388-401 CD denotes 9,11,53,84–86
T57630 403-415 NN denotes Oligomannose
T21025 416-426 NNS denotes abundances
T24463 427-429 IN denotes of
T96910 430-435 JJ denotes viral
T1932 436-449 NNS denotes glycoproteins
T11498 450-454 VBD denotes were
T36644 455-466 VBN denotes ascertained
T73246 467-469 IN denotes by
T1782 470-480 NN denotes HILIC-UPLC
T3180 481-489 NN denotes analysis
T62295 490-492 IN denotes of
T78639 493-499 NN denotes PNGase
T58794 500-501 NN denotes F
T67409 502-510 VBN denotes released
T15765 511-519 JJ denotes N-linked
T33026 520-527 NNS denotes glycans
T60951 528-532 WDT denotes that
T45752 533-537 VBD denotes were
T96739 538-551 RB denotes fluorescently
T44762 552-560 VBN denotes labelled
T97123 561-565 IN denotes with
T94571 566-586 NN denotes procainamide24,45,53
T49839 587-588 -LRB- denotes (
T5501 588-590 NN denotes SI
T78348 591-597 NN denotes Fig. 5
T93024 597-598 -RRB- denotes )
T81346 600-603 DT denotes The
T66936 604-610 NN denotes number
T36773 611-613 IN denotes of
T76460 614-624 JJ denotes amino-acid
T27945 625-633 NNS denotes residues
T75621 634-645 VBG denotes interacting
T84066 646-650 IN denotes with
T20906 651-659 JJ denotes N-linked
T54866 660-667 NNS denotes glycans
T73735 668-671 VBD denotes was
T12725 672-679 VBN denotes divided
T71326 680-682 IN denotes by
T33187 683-686 DT denotes the
T90192 687-693 NN denotes number
T62752 694-696 IN denotes of
T61364 697-715 JJ denotes solvent-accessible
T68346 716-726 JJ denotes amino-acid
T61476 727-735 NNS denotes residues
T43495 736-738 IN denotes of
T46241 739-742 DT denotes the
T24762 743-755 NN denotes glycoprotein
T53426 756-758 IN denotes as
T85566 759-760 DT denotes a
T28528 761-768 NN denotes measure
T60922 769-772 IN denotes for
T57613 773-779 JJ denotes global
T92947 780-786 NN denotes glycan
T81164 787-793 NN denotes shield
T10370 794-801 NN denotes density
T61338 803-806 DT denotes All
T48920 807-812 JJ denotes viral
T68543 813-826 NNS denotes glycoproteins
T82274 827-835 VBN denotes analysed
T26853 836-840 VBD denotes were
T71248 841-850 VBN denotes expressed
T33142 851-853 IN denotes as
T69877 854-861 NNS denotes trimers
T70780 862-864 IN denotes in
T61720 865-872 NN denotes HEK293F
T11163 873-878 NNS denotes cells
T6955 879-884 RB denotes apart
T40144 885-889 IN denotes from
T86025 890-894 NN denotes LASV
T38606 895-898 NN denotes GPC
T52914 898-899 -COMMA- denotes ,
T35666 900-905 WDT denotes which
T47548 906-909 VBD denotes was
T56105 910-917 VBN denotes derived
T54764 918-922 IN denotes from
T18669 923-933 JJ denotes virus-like
T49812 934-943 NNS denotes particles
T85286 944-948 IN denotes from
T2491 949-960 JJ denotes Madin-Darby
T81144 961-967 JJ denotes canine
T79381 968-974 NN denotes kidney
T4581 975-977 CD denotes II
T55061 978-983 NNS denotes cells
R76184 T52424 T60202 arg1Of Comparison,Fig.
R82223 T60202 T35932 arg1Of Fig.,6
R65192 T52424 T33530 arg1Of Comparison,of
R2936 T17551 T33530 arg2Of shields,of
R40383 T17551 T64406 arg1Of shields,the
R14742 T17551 T54237 arg1Of shields,glycan
R32039 T17551 T16798 arg1Of shields,of
R39868 T28685 T16798 arg2Of proteins,of
R21190 T28685 T41253 arg1Of proteins,viral
R2149 T28685 T25202 arg1Of proteins,class
R57572 T28685 T14464 arg1Of proteins,I
R86331 T28685 T85420 arg1Of proteins,fusion
R38765 T30294 T57548 arg1Of densities,Glycan
R85433 T30294 T11420 arg1Of densities,shield
R27948 T30294 T78773 arg1Of densities,were
R67688 T51996 T78773 arg2Of calculated,were
R14706 T30294 T51996 arg2Of densities,calculated
R3845 T31999 T60493 arg2Of and,using
R35026 T51996 T60493 modOf calculated,using
R91304 T24146 T7451 arg1Of Proteins,","
R83407 T11968 T7451 arg2Of Interfaces,","
R33652 T7451 T93687 arg1Of ",",","
R12788 T97859 T93687 arg2Of Structures,","
R85434 T93687 T31999 arg1Of ",",and
R49539 T70602 T31999 arg2Of Assemblies,and
R85216 T70602 T67118 arg1Of Assemblies,(
R11568 T86788 T67118 arg2Of PISA,(
R19405 T23666 T67118 arg3Of ),(
R16896 T54925 T93480 arg1Of analyses,83
R80879 T60493 T54925 arg1Of using,analyses
R82869 T54925 T13544 arg1Of analyses,of
R5899 T46270 T13544 arg2Of models,of
R99358 T95681 T10473 arg1Of glycosylated,fully
R79187 T46270 T95681 arg1Of models,glycosylated
R39812 T54925 T25318 arg1Of analyses,of
R18076 T61501 T25318 arg2Of ",",of
R28422 T36278 T63214 arg1Of S,SARS
R66179 T36278 T38160 arg1Of S,","
R12204 T50082 T38160 arg2Of S,","
R51926 T50082 T32901 arg1Of S,MERS
R14580 T38160 T20315 arg1Of ",",","
R20363 T80637 T20315 arg2Of S,","
R26558 T80637 T26336 arg1Of S,HKU1
R82101 T20315 T28124 arg1Of ",",","
R47204 T53169 T28124 arg2Of GPC,","
R58325 T53169 T48490 arg1Of GPC,LASV
R81574 T28124 T70489 arg1Of ",",","
R8502 T61005 T70489 arg2Of Env,","
R47832 T61005 T36851 arg1Of Env,HIV-1
R29627 T61005 T62312 arg1Of Env,(
R2207 T36158 T62312 arg2Of BG505,(
R7577 T19207 T62312 arg3Of ),(
R93882 T70489 T1909 arg1Of ",",","
R32451 T64807 T1909 arg2Of hemagglutinin,","
R57066 T64807 T16967 arg1Of hemagglutinin,Influenza
R4041 T64807 T17288 arg1Of hemagglutinin,H3N2
R45798 T64807 T69427 arg1Of hemagglutinin,(
R88973 T33012 T69427 arg2Of Victoria,(
R2862 T95304 T69427 arg3Of ),(
R59358 T33012 T31397 arg1Of Victoria,2011
R58230 T1909 T61501 arg1Of ",",","
R9199 T53051 T61501 arg2Of Env,","
R2347 T53051 T78843 arg1Of Env,SIV
R25157 T53051 T95730 arg1Of Env,(
R53928 T31925 T95730 arg2Of ",",(
R72329 T39966 T95730 arg3Of ),(
R29324 T12133 T35725 arg1Of 5X58,PDB
R41690 T12133 T46991 arg1Of 5X58,ID
R24287 T12133 T34645 arg1Of 5X58,","
R53821 T32072 T34645 arg2Of 5X59,","
R94202 T34645 T39600 arg1Of ",",","
R17192 T65590 T39600 arg2Of 5I08,","
R97807 T39600 T19879 arg1Of ",",","
R41133 T61708 T19879 arg2Of 5VK2,","
R3511 T19879 T80173 arg1Of ",",","
R59338 T86385 T80173 arg2Of 4ZMJ,","
R45489 T80173 T31925 arg1Of ",",","
R46093 T78881 T31925 arg2Of 4O5N,","
R68812 T78881 T64135 arg1Of 4O5N,","
R14533 T30171 T64135 arg2Of 6OHY,","
R80062 T78881 T91114 arg1Of 4O5N,","
R81880 T31925 T4958 arg1Of ",",respectively
R53776 T53051 T89368 arg1Of Env,"9,11,53,84–86"
R44894 T21025 T57630 arg1Of abundances,Oligomannose
R69562 T21025 T24463 arg1Of abundances,of
R21540 T1932 T24463 arg2Of glycoproteins,of
R7514 T1932 T96910 arg1Of glycoproteins,viral
R97236 T21025 T11498 arg1Of abundances,were
R58316 T36644 T11498 arg2Of ascertained,were
R27056 T3180 T36644 arg1Of analysis,ascertained
R93473 T21025 T36644 arg2Of abundances,ascertained
R3285 T3180 T73246 arg2Of analysis,by
R40920 T3180 T1782 arg1Of analysis,HILIC-UPLC
R88002 T3180 T62295 arg1Of analysis,of
R72750 T33026 T62295 arg2Of glycans,of
R74985 T33026 T78639 arg1Of glycans,PNGase
R7333 T67409 T58794 arg1Of released,F
R64284 T33026 T67409 arg1Of glycans,released
R80415 T33026 T15765 arg1Of glycans,N-linked
R34277 T33026 T60951 arg1Of glycans,that
R27911 T33026 T45752 arg1Of glycans,were
R77821 T44762 T45752 arg2Of labelled,were
R54892 T44762 T96739 arg1Of labelled,fluorescently
R30172 T33026 T44762 arg2Of glycans,labelled
R18949 T44762 T97123 arg1Of labelled,with
R9235 T94571 T97123 arg2Of "procainamide24,45,53",with
R62239 T94571 T49839 arg1Of "procainamide24,45,53",(
R33373 T78348 T49839 arg2Of Fig. 5,(
R60976 T93024 T49839 arg3Of ),(
R51450 T78348 T5501 arg1Of Fig. 5,SI
R59667 T66936 T81346 arg1Of number,The
R75548 T66936 T36773 arg1Of number,of
R81139 T27945 T36773 arg2Of residues,of
R19805 T27945 T76460 arg1Of residues,amino-acid
R30496 T27945 T75621 arg1Of residues,interacting
R7026 T75621 T84066 arg1Of interacting,with
R7338 T54866 T84066 arg2Of glycans,with
R22859 T54866 T20906 arg1Of glycans,N-linked
R88830 T66936 T73735 arg1Of number,was
R66372 T12725 T73735 arg2Of divided,was
R6303 T90192 T12725 arg1Of number,divided
R22147 T66936 T12725 arg2Of number,divided
R68459 T90192 T71326 arg2Of number,by
R4952 T90192 T33187 arg1Of number,the
R65614 T90192 T62752 arg1Of number,of
R76144 T61476 T62752 arg2Of residues,of
R23798 T61476 T61364 arg1Of residues,solvent-accessible
R16680 T61476 T68346 arg1Of residues,amino-acid
R67847 T61476 T43495 arg1Of residues,of
R27919 T24762 T43495 arg2Of glycoprotein,of
R63314 T24762 T46241 arg1Of glycoprotein,the
R39691 T12725 T53426 arg1Of divided,as
R60420 T28528 T53426 arg2Of measure,as
R62113 T28528 T85566 arg1Of measure,a
R84665 T28528 T60922 arg1Of measure,for
R14478 T10370 T60922 arg2Of density,for
R14520 T10370 T57613 arg1Of density,global
R6605 T10370 T92947 arg1Of density,glycan
R68476 T10370 T81164 arg1Of density,shield
R60211 T68543 T61338 arg1Of glycoproteins,All
R42722 T68543 T48920 arg1Of glycoproteins,viral
R52020 T68543 T82274 arg2Of glycoproteins,analysed
R44667 T68543 T26853 arg1Of glycoproteins,were
R84689 T71248 T26853 arg2Of expressed,were
R23244 T68543 T71248 arg2Of glycoproteins,expressed
R39024 T71248 T33142 arg1Of expressed,as
R14422 T69877 T33142 arg2Of trimers,as
R38169 T69877 T70780 arg1Of trimers,in
R60619 T11163 T70780 arg2Of cells,in
R96798 T11163 T61720 arg1Of cells,HEK293F
R96790 T11163 T6955 arg1Of cells,apart
R44107 T6955 T40144 arg1Of apart,from
R65398 T38606 T40144 arg2Of GPC,from
R51633 T38606 T86025 arg1Of GPC,LASV
R96070 T38606 T52914 arg1Of GPC,","
R62312 T38606 T35666 arg1Of GPC,which
R23171 T38606 T47548 arg1Of GPC,was
R24376 T56105 T47548 arg2Of derived,was
R72771 T38606 T56105 arg2Of GPC,derived
R67041 T56105 T54764 arg1Of derived,from
R58633 T49812 T54764 arg2Of particles,from
R37988 T49812 T18669 arg1Of particles,virus-like
R87260 T49812 T85286 arg1Of particles,from
R85123 T55061 T85286 arg2Of cells,from
R12683 T55061 T2491 arg1Of cells,Madin-Darby
R51133 T55061 T81144 arg1Of cells,canine
R78518 T55061 T79381 arg1Of cells,kidney
R24262 T55061 T4581 arg1Of cells,II

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T125 64-72 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T126 120-128 Body_part denotes Proteins http://purl.org/sig/ont/fma/fma67257
T127 252-255 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T128 436-449 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T129 614-624 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T130 716-726 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T131 743-755 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T132 813-826 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T133 873-878 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T134 968-974 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T135 978-983 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T154 64-72 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T155 74-80 Chemical denotes Glycan http://purl.obolibrary.org/obo/CHEBI_18154
T156 436-449 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T157 520-527 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T158 614-633 Chemical denotes amino-acid residues http://purl.obolibrary.org/obo/CHEBI_33708
T159 660-667 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T160 716-735 Chemical denotes amino-acid residues http://purl.obolibrary.org/obo/CHEBI_33708
T161 743-755 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T162 813-826 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T153 218-222 Species denotes SARS NCBItxid:694009
T154 226-230 Species denotes MERS NCBItxid:1335626
T155 242-246 Species denotes LASV NCBItxid:11620
T156 252-257 Species denotes HIV-1 NCBItxid:11676
T157 281-285 Species denotes H3N2 NCBItxid:119210
T158 301-309 Species denotes Victoria NCBItxid:4420
T159 317-320 Species denotes SIV NCBItxid:11723
T160 890-894 Species denotes LASV NCBItxid:11620

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T126 0-73 Sentence denotes Fig. 6 Comparison of the glycan shields of viral class I fusion proteins.
T127 74-402 Sentence denotes Glycan shield densities were calculated using Proteins, Interfaces, Structures and Assemblies (PISA)83 analyses of fully glycosylated models of SARS S, MERS S, HKU1 S, LASV GPC, HIV-1 Env (BG505), Influenza H3N2 hemagglutinin (Victoria 2011), SIV Env (PDB ID 5X58, 5X59, 5I08, 5VK2, 4ZMJ, 4O5N, 6OHY, respectively)9,11,53,84–86.
T128 403-599 Sentence denotes Oligomannose abundances of viral glycoproteins were ascertained by HILIC-UPLC analysis of PNGase F released N-linked glycans that were fluorescently labelled with procainamide24,45,53 (SI Fig. 5).
T129 600-802 Sentence denotes The number of amino-acid residues interacting with N-linked glycans was divided by the number of solvent-accessible amino-acid residues of the glycoprotein as a measure for global glycan shield density.
T130 803-984 Sentence denotes All viral glycoproteins analysed were expressed as trimers in HEK293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells.

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T5 968-974 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T69 218-222 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T70 271-280 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T71 317-320 Disease denotes SIV http://purl.obolibrary.org/obo/MONDO_0010029

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
715 25-31 Chemical denotes glycan MESH:D011134
744 226-230 Disease denotes MERS MESH:D018352
731 247-250 Gene denotes GPC Gene:2995
735 252-257 Species denotes HIV-1 Tax:11676
732 258-261 Gene denotes Env Gene:64006
737 271-280 Species denotes Influenza Tax:11320
736 281-285 Species denotes H3N2 Tax:119210
733 321-324 Gene denotes Env Gene:64006
739 403-415 Chemical denotes Oligomannose
740 511-527 Chemical denotes N-linked glycans
741 566-578 Chemical denotes procainamide MESH:D011342
742 651-667 Chemical denotes N-linked glycans
743 780-786 Chemical denotes glycan MESH:D011134
745 865-872 CellLine denotes HEK293F CVCL:6642
734 895-898 Gene denotes GPC Gene:2995

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T4295 247-250 Protein denotes GPC https://www.uniprot.org/uniprot/P03711
T4296 258-261 Protein denotes Env https://www.uniprot.org/uniprot/C1JJY3|https://www.uniprot.org/uniprot/P24123
T4298 286-299 Protein denotes hemagglutinin https://www.uniprot.org/uniprot/Q9YS46|https://www.uniprot.org/uniprot/Q9WNX2|https://www.uniprot.org/uniprot/Q9WFZ1|https://www.uniprot.org/uniprot/Q9WFX3|https://www.uniprot.org/uniprot/Q9WCE8|https://www.uniprot.org/uniprot/Q9WCE3|https://www.uniprot.org/uniprot/Q9WCE1|https://www.uniprot.org/uniprot/Q9WCD9|https://www.uniprot.org/uniprot/Q9WCD8|https://www.uniprot.org/uniprot/Q9WAK5|https://www.uniprot.org/uniprot/Q9WAK4|https://www.uniprot.org/uniprot/Q9WAA0|https://www.uniprot.org/uniprot/Q9WA90|https://www.uniprot.org/uniprot/Q9Q0U6|https://www.uniprot.org/uniprot/Q9PY85|https://www.uniprot.org/uniprot/Q9JF47|https://www.uniprot.org/uniprot/Q9IFF7|https://www.uniprot.org/uniprot/Q9EA20|https://www.uniprot.org/uniprot/Q9E780|https://www.uniprot.org/uniprot/Q998M5|https://www.uniprot.org/uniprot/Q98637|https://www.uniprot.org/uniprot/Q98636|https://www.uniprot.org/uniprot/Q98635|https://www.uniprot.org/uniprot/Q98167|https://www.uniprot.org/uniprot/Q96802|https://www.uniprot.org/uniprot/Q96642|https://www.uniprot.org/uniprot/Q91MA7|https://www.uniprot.org/uniprot/Q91HI9|https://www.uniprot.org/uniprot/Q910M5|https://www.uniprot.org/uniprot/Q86214|https://www.uniprot.org/uniprot/Q86202|https://www.uniprot.org/uniprot/Q86201|https://www.uniprot.org/uniprot/Q86200|https://www.uniprot.org/uniprot/Q86179|https://www.uniprot.org/uniprot/Q86178|https://www.uniprot.org/uniprot/Q86177|https://www.uniprot.org/uniprot/Q86176|https://www.uniprot.org/uniprot/Q86170|https://www.uniprot.org/uniprot/Q85668|https://www.uniprot.org/uniprot/Q85663|https://www.uniprot.org/uniprot/Q84107|https://www.uniprot.org/uniprot/Q84026|https://www.uniprot.org/uniprot/Q84025|https://www.uniprot.org/uniprot/Q84024|https://www.uniprot.org/uniprot/Q84023|https://www.uniprot.org/uniprot/Q84022|https://www.uniprot.org/uniprot/Q84021|https://www.uniprot.org/uniprot/Q84020|https://www.uniprot.org/uniprot/Q84019|https://www.uniprot.org/uniprot/Q84018|https://www.uniprot.org/uniprot/Q84017|https://www.uniprot.org/uniprot/Q84016|https://www.uniprot.org/uniprot/Q84015|https://www.uniprot.org/uniprot/Q84014|https://www.uniprot.org/uniprot/Q84013|https://www.uniprot.org/uniprot/Q84012|https://www.uniprot.org/uniprot/Q84011|https://www.uniprot.org/uniprot/Q84010|https://www.uniprot.org/uniprot/Q84009|https://www.uniprot.org/uniprot/Q84007|https://www.uniprot.org/uniprot/Q84006|https://www.uniprot.org/uniprot/Q84005|https://www.uniprot.org/uniprot/Q84004|https://www.uniprot.org/uniprot/Q84003|https://www.uniprot.org/uniprot/Q84002|https://www.uniprot.org/uniprot/Q84001|https://www.uniprot.org/uniprot/Q84000|https://www.uniprot.org/uniprot/Q83999|https://www.uniprot.org/uniprot/Q83998|https://www.uniprot.org/uniprot/Q83997|https://www.uniprot.org/uniprot/Q83996|https://www.uniprot.org/uniprot/Q83995|https://www.uniprot.org/uniprot/Q83994|https://www.uniprot.org/uniprot/Q83993|https://www.uniprot.org/uniprot/Q83992|https://www.uniprot.org/uniprot/Q83991|https://www.uniprot.org/uniprot/Q83990|https://www.uniprot.org/uniprot/Q83988|https://www.uniprot.org/uniprot/Q83987|https://www.uniprot.org/uniprot/Q83964|https://www.uniprot.org/uniprot/Q83962|https://www.uniprot.org/uniprot/Q83961|https://www.uniprot.org/uniprot/Q83445|https://www.uniprot.org/uniprot/Q83440|https://www.uniprot.org/uniprot/Q82559|https://www.uniprot.org/uniprot/Q82509|https://www.uniprot.org/uniprot/Q82040|https://www.uniprot.org/uniprot/Q80P75|https://www.uniprot.org/uniprot/Q80A30|https://www.uniprot.org/uniprot/Q80A28|https://www.uniprot.org/uniprot/Q80A26|https://www.uniprot.org/uniprot/Q80A22|https://www.uniprot.org/uniprot/Q76ZM3|https://www.uniprot.org/uniprot/Q75Z90|https://www.uniprot.org/uniprot/Q70UN5|https://www.uniprot.org/uniprot/Q70UN4|https://www.uniprot.org/uniprot/Q6TXB8|https://www.uniprot.org/uniprot/Q6PLR4|https://www.uniprot.org/uniprot/Q6LEJ4|https://www.uniprot.org/uniprot/Q6J8F6|https://www.uniprot.org/uniprot/Q6J8E7|https://www.uniprot.org/uniprot/Q6DQ22|https://www.uniprot.org/uniprot/Q6DQ21|https://www.uniprot.org/uniprot/Q6DQ20|https://www.uniprot.org/uniprot/Q6DQ19|https://www.uniprot.org/uniprot/Q6DQ18|https://www.uniprot.org/uniprot/Q6DQ15|https://www.uniprot.org/uniprot/Q6DPZ9|https://www.uniprot.org/uniprot/Q6DME6|https://www.uniprot.org/uniprot/Q67381|https://www.uniprot.org/uniprot/Q67380|https://www.uniprot.org/uniprot/Q67379|https://www.uniprot.org/uniprot/Q67378|https://www.uniprot.org/uniprot/Q67377|https://www.uniprot.org/uniprot/Q67376|https://www.uniprot.org/uniprot/Q67375|https://www.uniprot.org/uniprot/Q67374|https://www.uniprot.org/uniprot/Q67373|https://www.uniprot.org/uniprot/Q67372|https://www.uniprot.org/uniprot/Q67371|https://www.uniprot.org/uniprot/Q67370|https://www.uniprot.org/uniprot/Q67369|https://www.uniprot.org/uniprot/Q67333|https://www.uniprot.org/uniprot/Q67282|https://www.uniprot.org/uniprot/Q67143|https://www.uniprot.org/uniprot/Q67132|https://www.uniprot.org/uniprot/Q67117|https://www.uniprot.org/uniprot/Q67110|https://www.uniprot.org/uniprot/Q67108|https://www.uniprot.org/uniprot/Q67098|https://www.uniprot.org/uniprot/Q67097|https://www.uniprot.org/uniprot/Q67095|https://www.uniprot.org/uniprot/Q67087|https://www.uniprot.org/uniprot/Q67023|https://www.uniprot.org/uniprot/Q67022|https://www.uniprot.org/uniprot/Q67018|https://www.uniprot.org/uniprot/Q65525|https://www.uniprot.org/uniprot/Q463X5|https://www.uniprot.org/uniprot/Q45UF8|https://www.uniprot.org/uniprot/Q3ZK58|https://www.uniprot.org/uniprot/Q3YPZ5|https://www.uniprot.org/uniprot/Q3SBE7|https://www.uniprot.org/uniprot/Q38SQ8|https://www.uniprot.org/uniprot/Q30NQ1|https://www.uniprot.org/uniprot/Q2VNF2|https://www.uniprot.org/uniprot/Q2VND2|https://www.uniprot.org/uniprot/Q2VC96|https://www.uniprot.org/uniprot/Q2RFA5|https://www.uniprot.org/uniprot/Q2RCH5|https://www.uniprot.org/uniprot/Q2MH37|https://www.uniprot.org/uniprot/Q2MH36|https://www.uniprot.org/uniprot/Q2MH35|https://www.uniprot.org/uniprot/Q2ICR0|https://www.uniprot.org/uniprot/Q2F4V2|https://www.uniprot.org/uniprot/Q289M7|https://www.uniprot.org/uniprot/Q288Z6|https://www.uniprot.org/uniprot/Q20PM3|https://www.uniprot.org/uniprot/Q20N38|https://www.uniprot.org/uniprot/Q1WP09|https://www.uniprot.org/uniprot/Q1PUD9|https://www.uniprot.org/uniprot/Q1K9E1|https://www.uniprot.org/uniprot/Q1G0M2|https://www.uniprot.org/uniprot/Q1G0M1|https://www.uniprot.org/uniprot/Q1G0M0|https://www.uniprot.org/uniprot/Q1G0L9|https://www.uniprot.org/uniprot/Q1G0L8|https://www.uniprot.org/uniprot/Q1G0L7|https://www.uniprot.org/uniprot/Q194S8|https://www.uniprot.org/uniprot/Q0PDM6|https://www.uniprot.org/uniprot/Q0PCG7|https://www.uniprot.org/uniprot/Q0HD60|https://www.uniprot.org/uniprot/Q0A465|https://www.uniprot.org/uniprot/Q0A459|https://www.uniprot.org/uniprot/Q0A448|https://www.uniprot.org/uniprot/Q0A437|https://www.uniprot.org/uniprot/Q0A416|https://www.uniprot.org/uniprot/Q0A3Y1|https://www.uniprot.org/uniprot/Q0A3T9|https://www.uniprot.org/uniprot/Q0A2I7|https://www.uniprot.org/uniprot/Q0A2H6|https://www.uniprot.org/uniprot/Q0A2G5|https://www.uniprot.org/uniprot/Q09113|https://www.uniprot.org/uniprot/Q08IH2|https://www.uniprot.org/uniprot/P26101|https://www.uniprot.org/uniprot/P26100|https://www.uniprot.org/uniprot/P26099|https://www.uniprot.org/uniprot/P26098|https://www.uniprot.org/uniprot/P26097|https://www.uniprot.org/uniprot/P26096|https://www.uniprot.org/uniprot/P26095|https://www.uniprot.org/uniprot/P26094|https://www.uniprot.org/uniprot/P25174|https://www.uniprot.org/uniprot/P25173|https://www.uniprot.org/uniprot/P23045|https://www.uniprot.org/uniprot/P22092|https://www.uniprot.org/uniprot/P21284|https://www.uniprot.org/uniprot/P20978|https://www.uniprot.org/uniprot/P19702|https://www.uniprot.org/uniprot/P19701|https://www.uniprot.org/uniprot/P19700|https://www.uniprot.org/uniprot/P19699|https://www.uniprot.org/uniprot/P19698|https://www.uniprot.org/uniprot/P19697|https://www.uniprot.org/uniprot/P19696|https://www.uniprot.org/uniprot/P19695|https://www.uniprot.org/uniprot/P19694|https://www.uniprot.org/uniprot/P19106|https://www.uniprot.org/uniprot/P18880|https://www.uniprot.org/uniprot/P18879|https://www.uniprot.org/uniprot/P18878|https://www.uniprot.org/uniprot/P18877|https://www.uniprot.org/uniprot/P18876|https://www.uniprot.org/uniprot/P18875|https://www.uniprot.org/uniprot/P17504|https://www.uniprot.org/uniprot/P17465|https://www.uniprot.org/uniprot/P17464|https://www.uniprot.org/uniprot/P17463|https://www.uniprot.org/uniprot/P17002|https://www.uniprot.org/uniprot/P17001|https://www.uniprot.org/uniprot/P17000|https://www.uniprot.org/uniprot/P16999|https://www.uniprot.org/uniprot/P16998|https://www.uniprot.org/uniprot/P16997|https://www.uniprot.org/uniprot/P16996|https://www.uniprot.org/uniprot/P16995|https://www.uniprot.org/uniprot/P16994|https://www.uniprot.org/uniprot/P16561|https://www.uniprot.org/uniprot/P16060|https://www.uniprot.org/uniprot/P15658|https://www.uniprot.org/uniprot/P15155|https://www.uniprot.org/uniprot/P13842|https://www.uniprot.org/uniprot/P13103|https://www.uniprot.org/uniprot/P13102|https://www.uniprot.org/uniprot/P13101|https://www.uniprot.org/uniprot/P12976|https://www.uniprot.org/uniprot/P12590|https://www.uniprot.org/uniprot/P12589|https://www.uniprot.org/uniprot/P12588|https://www.uniprot.org/uniprot/P12587|https://www.uniprot.org/uniprot/P12586|https://www.uniprot.org/uniprot/P12585|https://www.uniprot.org/uniprot/P12584|https://www.uniprot.org/uniprot/P12583|https://www.uniprot.org/uniprot/P12582|https://www.uniprot.org/uniprot/P12581|https://www.uniprot.org/uniprot/P12474|https://www.uniprot.org/uniprot/P12473|https://www.uniprot.org/uniprot/P12443|https://www.uniprot.org/uniprot/P12442|https://www.uniprot.org/uniprot/P12441|https://www.uniprot.org/uniprot/P12440|https://www.uniprot.org/uniprot/P12439|https://www.uniprot.org/uniprot/P11201|https://www.uniprot.org/uniprot/P11200|https://www.uniprot.org/uniprot/P11199|https://www.uniprot.org/uniprot/P11198|https://www.uniprot.org/uniprot/P11197|https://www.uniprot.org/uniprot/P11196|https://www.uniprot.org/uniprot/P11195|https://www.uniprot.org/uniprot/P11194|https://www.uniprot.org/uniprot/P11193|https://www.uniprot.org/uniprot/P11135|https://www.uniprot.org/uniprot/P11134|https://www.uniprot.org/uniprot/P11133|https://www.uniprot.org/uniprot/P11132|https://www.uniprot.org/uniprot/P11114|https://www.uniprot.org/uniprot/P10757|https://www.uniprot.org/uniprot/P10448|https://www.uniprot.org/uniprot/P0C6Y9|https://www.uniprot.org/uniprot/P0C6Y8|https://www.uniprot.org/uniprot/P09767|https://www.uniprot.org/uniprot/P09766|https://www.uniprot.org/uniprot/P09765|https://www.uniprot.org/uniprot/P09345|https://www.uniprot.org/uniprot/P09344|https://www.uniprot.org/uniprot/P09343|https://www.uniprot.org/uniprot/Q8QPL1|https://www.uniprot.org/uniprot/Q8JUU5|https://www.uniprot.org/uniprot/Q8JNB4|https://www.uniprot.org/uniprot/Q8JNB1|https://www.uniprot.org/uniprot/Q89793|https://www.uniprot.org/uniprot/Q89470|https://www.uniprot.org/uniprot/Q89182|https://www.uniprot.org/uniprot/Q89120|https://www.uniprot.org/uniprot/Q86229|https://www.uniprot.org/uniprot/Q86227|https://www.uniprot.org/uniprot/Q86221|https://www.uniprot.org/uniprot/Q86215|https://www.uniprot.org/uniprot/P08714|https://www.uniprot.org/uniprot/P08713|https://www.uniprot.org/uniprot/P07977|https://www.uniprot.org/uniprot/P07976|https://www.uniprot.org/uniprot/P07937|https://www.uniprot.org/uniprot/P04664|https://www.uniprot.org/uniprot/P04663|https://www.uniprot.org/uniprot/P04662|https://www.uniprot.org/uniprot/P04661|https://www.uniprot.org/uniprot/P04660|https://www.uniprot.org/uniprot/P04659|https://www.uniprot.org/uniprot/P04508|https://www.uniprot.org/uniprot/P04507|https://www.uniprot.org/uniprot/P04506|https://www.uniprot.org/uniprot/P03528|https://www.uniprot.org/uniprot/P03464|https://www.uniprot.org/uniprot/P03463|https://www.uniprot.org/uniprot/P03462|https://www.uniprot.org/uniprot/P03461|https://www.uniprot.org/uniprot/P03460|https://www.uniprot.org/uniprot/P03459|https://www.uniprot.org/uniprot/P03458|https://www.uniprot.org/uniprot/P03457|https://www.uniprot.org/uniprot/P03456|https://www.uniprot.org/uniprot/P03455|https://www.uniprot.org/uniprot/P03454|https://www.uniprot.org/uniprot/P03453|https://www.uniprot.org/uniprot/P03452|https://www.uniprot.org/uniprot/P03451|https://www.uniprot.org/uniprot/P03450|https://www.uniprot.org/uniprot/P03449|https://www.uniprot.org/uniprot/P03448|https://www.uniprot.org/uniprot/P03447|https://www.uniprot.org/uniprot/P03446|https://www.uniprot.org/uniprot/P03445|https://www.uniprot.org/uniprot/P03444|https://www.uniprot.org/uniprot/P03443|https://www.uniprot.org/uniprot/P03442|https://www.uniprot.org/uniprot/P03441|https://www.uniprot.org/uniprot/P03440|https://www.uniprot.org/uniprot/P03439|https://www.uniprot.org/uniprot/P03438|https://www.uniprot.org/uniprot/P03437|https://www.uniprot.org/uniprot/P03436|https://www.uniprot.org/uniprot/P03435|https://www.uniprot.org/uniprot/O90384|https://www.uniprot.org/uniprot/O89746|https://www.uniprot.org/uniprot/O72737|https://www.uniprot.org/uniprot/O56262|https://www.uniprot.org/uniprot/O56140|https://www.uniprot.org/uniprot/O40676|https://www.uniprot.org/uniprot/O11283|https://www.uniprot.org/uniprot/O10426|https://www.uniprot.org/uniprot/O10425|https://www.uniprot.org/uniprot/O10424|https://www.uniprot.org/uniprot/O09652|https://www.uniprot.org/uniprot/O09651|https://www.uniprot.org/uniprot/B4URD6|https://www.uniprot.org/uniprot/B3SRX5|https://www.uniprot.org/uniprot/B3SRW7|https://www.uniprot.org/uniprot/B3SRV1|https://www.uniprot.org/uniprot/A8C8W3|https://www.uniprot.org/uniprot/A8C8J4|https://www.uniprot.org/uniprot/A4ZY30|https://www.uniprot.org/uniprot/A4ZY26|https://www.uniprot.org/uniprot/A4U7A6|https://www.uniprot.org/uniprot/A4U6V2|https://www.uniprot.org/uniprot/A4K143|https://www.uniprot.org/uniprot/A4GXH4|https://www.uniprot.org/uniprot/A4GCL9|https://www.uniprot.org/uniprot/A4GCK8|https://www.uniprot.org/uniprot/A4GCJ7|https://www.uniprot.org/uniprot/A4GCI6|https://www.uniprot.org/uniprot/A4GCH5|https://www.uniprot.org/uniprot/A4GBX7|https://www.uniprot.org/uniprot/A3DRP0|https://www.uniprot.org/uniprot/A2T3T2|https://www.uniprot.org/uniprot/A2T3M1|https://www.uniprot.org/uniprot/A0PC85|https://www.uniprot.org/uniprot/Q08778|https://www.uniprot.org/uniprot/Q08011|https://www.uniprot.org/uniprot/Q08010|https://www.uniprot.org/uniprot/Q07FI5|https://www.uniprot.org/uniprot/Q07926|https://www.uniprot.org/uniprot/Q07925|https://www.uniprot.org/uniprot/Q07924|https://www.uniprot.org/uniprot/Q07922|https://www.uniprot.org/uniprot/Q07920|https://www.uniprot.org/uniprot/Q07416|https://www.uniprot.org/uniprot/Q06895|https://www.uniprot.org/uniprot/Q06894|https://www.uniprot.org/uniprot/Q05334|https://www.uniprot.org/uniprot/Q04916|https://www.uniprot.org/uniprot/Q03909|https://www.uniprot.org/uniprot/Q02945|https://www.uniprot.org/uniprot/Q01641|https://www.uniprot.org/uniprot/Q01218|https://www.uniprot.org/uniprot/Q00716|https://www.uniprot.org/uniprot/P87506|https://www.uniprot.org/uniprot/P68760|https://www.uniprot.org/uniprot/P68759|https://www.uniprot.org/uniprot/P68758|https://www.uniprot.org/uniprot/P68757|https://www.uniprot.org/uniprot/P68756|https://www.uniprot.org/uniprot/P68755|https://www.uniprot.org/uniprot/P43260|https://www.uniprot.org/uniprot/P43259|https://www.uniprot.org/uniprot/P43258|https://www.uniprot.org/uniprot/P43257|https://www.uniprot.org/uniprot/P39034|https://www.uniprot.org/uniprot/P39033|https://www.uniprot.org/uniprot/P36346|https://www.uniprot.org/uniprot/P36308|https://www.uniprot.org/uniprot/P36307|https://www.uniprot.org/uniprot/P36306|https://www.uniprot.org/uniprot/P36305|https://www.uniprot.org/uniprot/P35746|https://www.uniprot.org/uniprot/P33807|https://www.uniprot.org/uniprot/P30214|https://www.uniprot.org/uniprot/P28731|https://www.uniprot.org/uniprot/P28730|https://www.uniprot.org/uniprot/P26562|https://www.uniprot.org/uniprot/P26451|https://www.uniprot.org/uniprot/P26193|https://www.uniprot.org/uniprot/P26142|https://www.uniprot.org/uniprot/P26141|https://www.uniprot.org/uniprot/P26140|https://www.uniprot.org/uniprot/P26139|https://www.uniprot.org/uniprot/P26138|https://www.uniprot.org/uniprot/P26137|https://www.uniprot.org/uniprot/P26136|https://www.uniprot.org/uniprot/P26135|https://www.uniprot.org/uniprot/P26134|https://www.uniprot.org/uniprot/P26103|https://www.uniprot.org/uniprot/P26102|https://www.uniprot.org/uniprot/B3SRU3|https://www.uniprot.org/uniprot/B3SRS7|https://www.uniprot.org/uniprot/B3SRR9|https://www.uniprot.org/uniprot/B3SRR1|https://www.uniprot.org/uniprot/B3SRQ3|https://www.uniprot.org/uniprot/B3EUQ6|https://www.uniprot.org/uniprot/A9Q1L0
T4728 321-324 Protein denotes Env https://www.uniprot.org/uniprot/C1JJY3|https://www.uniprot.org/uniprot/P24123
T4730 436-449 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T4815 493-499 Protein denotes PNGase https://www.uniprot.org/uniprot/Q9TW67|https://www.uniprot.org/uniprot/Q9NR70|https://www.uniprot.org/uniprot/Q9NBD6|https://www.uniprot.org/uniprot/Q9JI78|https://www.uniprot.org/uniprot/Q9CTK3|https://www.uniprot.org/uniprot/Q9BVR8|https://www.uniprot.org/uniprot/Q96IV0|https://www.uniprot.org/uniprot/Q8K113|https://www.uniprot.org/uniprot/Q6PJD8|https://www.uniprot.org/uniprot/Q5ZJM3|https://www.uniprot.org/uniprot/Q5XI55|https://www.uniprot.org/uniprot/Q5WNE3|https://www.uniprot.org/uniprot/Q59FB1|https://www.uniprot.org/uniprot/Q503I8|https://www.uniprot.org/uniprot/Q4R6F3|https://www.uniprot.org/uniprot/B4DJE9|https://www.uniprot.org/uniprot/A8X5N2
T4832 743-760 Protein denotes glycoprotein as a https://www.uniprot.org/uniprot/Q77MR8|https://www.uniprot.org/uniprot/Q6LAR3|https://www.uniprot.org/uniprot/P33500|https://www.uniprot.org/uniprot/P22651|https://www.uniprot.org/uniprot/P22650|https://www.uniprot.org/uniprot/P18535|https://www.uniprot.org/uniprot/P13374|https://www.uniprot.org/uniprot/P10681
T4840 813-826 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T4925 895-898 Protein denotes GPC https://www.uniprot.org/uniprot/P03711

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T3 968-974 http://purl.obolibrary.org/obo/MAT_0000119 denotes kidney

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T44 493-501 http://purl.obolibrary.org/obo/GO_0000224 denotes PNGase F

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T126 0-73 Sentence denotes Fig. 6 Comparison of the glycan shields of viral class I fusion proteins.
T127 74-402 Sentence denotes Glycan shield densities were calculated using Proteins, Interfaces, Structures and Assemblies (PISA)83 analyses of fully glycosylated models of SARS S, MERS S, HKU1 S, LASV GPC, HIV-1 Env (BG505), Influenza H3N2 hemagglutinin (Victoria 2011), SIV Env (PDB ID 5X58, 5X59, 5I08, 5VK2, 4ZMJ, 4O5N, 6OHY, respectively)9,11,53,84–86.
T128 403-599 Sentence denotes Oligomannose abundances of viral glycoproteins were ascertained by HILIC-UPLC analysis of PNGase F released N-linked glycans that were fluorescently labelled with procainamide24,45,53 (SI Fig. 5).
T129 600-802 Sentence denotes The number of amino-acid residues interacting with N-linked glycans was divided by the number of solvent-accessible amino-acid residues of the glycoprotein as a measure for global glycan shield density.
T130 803-984 Sentence denotes All viral glycoproteins analysed were expressed as trimers in HEK293F cells apart from LASV GPC, which was derived from virus-like particles from Madin-Darby canine kidney II cells.

LitCovid-sample-Glycan

Id Subject Object Predicate Lexical cue
T49 803-806 https://glytoucan.org/Structures/Glycans/G05518TD denotes All