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PMC:7253482 / 21363-21708 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
752 25-31 Chemical denotes glycan MESH:D011134
753 201-208 Chemical denotes glycans MESH:D011134
754 322-334 Chemical denotes oligomannose

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T122 79-87 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T123 170-181 Body_part denotes amino-acids http://purl.org/sig/ont/fma/fma82739
T124 245-255 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T125 284-296 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T121 94-95 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T122 245-264 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino-acid residues
T123 245-264 http://purl.obolibrary.org/obo/PR_000036907 denotes amino-acid residues

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T215 79-87 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T216 170-175 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T217 176-181 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T218 201-208 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T219 226-233 Chemical denotes solvent http://purl.obolibrary.org/obo/CHEBI_46787
T220 245-264 Chemical denotes amino-acid residues http://purl.obolibrary.org/obo/CHEBI_33708
T221 245-250 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T222 251-255 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T223 284-296 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T8 8-20 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes investigated http://purl.bioontology.org/ontology/MEDDRA/10062026

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T77334 0-2 PRP denotes We
T62822 3-7 RB denotes then
T3264 8-20 VBD denotes investigated
T90908 21-24 DT denotes the
T93386 25-31 NN denotes glycan
T20732 32-38 NN denotes shield
T38777 39-48 NNS denotes densities
T13008 49-51 IN denotes of
T66872 52-57 CD denotes seven
T69255 58-63 JJ denotes viral
T47768 64-69 NN denotes class
T56776 70-71 CD denotes I
T4483 72-78 NN denotes fusion
T51449 79-87 NNS denotes proteins
T68472 88-93 VBG denotes using
T54019 94-95 DT denotes a
T34571 96-102 JJ denotes global
T29179 103-113 JJ denotes structural
T72666 114-122 NN denotes approach
T29830 123-128 WDT denotes which
T75361 129-132 VBD denotes was
T60433 133-143 VBN denotes calculated
T21150 144-146 IN denotes by
T65408 147-155 VBG denotes dividing
T12510 156-159 DT denotes the
T47420 160-166 NN denotes number
T7804 167-169 IN denotes of
T96477 170-181 NNS denotes amino-acids
T57287 182-186 WDT denotes that
T31963 187-195 VBP denotes interact
T11453 196-200 IN denotes with
T5466 201-208 NNS denotes glycans
T67617 209-211 IN denotes by
T76751 212-215 DT denotes the
T95787 216-222 NN denotes number
T84433 223-225 IN denotes of
T75342 226-244 JJ denotes solvent-accessible
T8633 245-255 JJ denotes amino-acid
T96165 256-264 NNS denotes residues
T61859 265-267 IN denotes of
T96398 268-272 DT denotes each
T53031 273-283 JJ denotes respective
T13646 284-296 NN denotes glycoprotein
T34895 297-300 CC denotes and
T21412 301-308 VBD denotes plotted
T93327 309-313 DT denotes this
T37324 314-321 IN denotes against
T83132 322-334 NN denotes oligomannose
T17751 335-344 NN denotes abundance
R87623 T3264 T62822 arg1Of investigated,then
R83516 T77334 T3264 arg1Of We,investigated
R3140 T38777 T3264 arg2Of densities,investigated
R89054 T38777 T90908 arg1Of densities,the
R23058 T38777 T93386 arg1Of densities,glycan
R65182 T38777 T20732 arg1Of densities,shield
R98997 T38777 T13008 arg1Of densities,of
R75510 T51449 T13008 arg2Of proteins,of
R58533 T51449 T66872 arg1Of proteins,seven
R86146 T51449 T69255 arg1Of proteins,viral
R2569 T51449 T47768 arg1Of proteins,class
R73887 T51449 T56776 arg1Of proteins,I
R13781 T51449 T4483 arg1Of proteins,fusion
R14572 T77334 T68472 arg1Of We,using
R77919 T72666 T68472 arg2Of approach,using
R24334 T3264 T68472 modOf investigated,using
R82423 T72666 T54019 arg1Of approach,a
R97505 T72666 T34571 arg1Of approach,global
R78741 T72666 T29179 arg1Of approach,structural
R43446 T72666 T29830 arg1Of approach,which
R35456 T72666 T75361 arg1Of approach,was
R81263 T60433 T75361 arg2Of calculated,was
R31579 T72666 T60433 arg2Of approach,calculated
R13123 T60433 T21150 arg1Of calculated,by
R28323 T65408 T21150 arg2Of dividing,by
R20111 T47420 T65408 arg2Of number,dividing
R9175 T47420 T12510 arg1Of number,the
R95827 T47420 T7804 arg1Of number,of
R15347 T96477 T7804 arg2Of amino-acids,of
R51134 T96477 T57287 arg1Of amino-acids,that
R42830 T96477 T31963 arg1Of amino-acids,interact
R85024 T31963 T11453 arg1Of interact,with
R75968 T5466 T11453 arg2Of glycans,with
R16719 T47420 T67617 arg1Of number,by
R77888 T95787 T67617 arg2Of number,by
R94385 T95787 T76751 arg1Of number,the
R81614 T95787 T84433 arg1Of number,of
R75973 T96165 T84433 arg2Of residues,of
R62166 T96165 T75342 arg1Of residues,solvent-accessible
R54228 T96165 T8633 arg1Of residues,amino-acid
R10009 T96165 T61859 arg1Of residues,of
R77752 T13646 T61859 arg2Of glycoprotein,of
R94627 T13646 T96398 arg1Of glycoprotein,each
R99353 T13646 T53031 arg1Of glycoprotein,respective
R72278 T60433 T34895 arg1Of calculated,and
R43254 T21412 T34895 arg2Of plotted,and
R80635 T72666 T21412 arg1Of approach,plotted
R99324 T93327 T21412 arg2Of this,plotted
R38610 T21412 T37324 arg1Of plotted,against
R23783 T17751 T37324 arg2Of abundance,against
R32496 T17751 T83132 arg1Of abundance,oligomannose

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T121 79-87 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T122 170-181 Body_part denotes amino-acids http://purl.org/sig/ont/fma/fma82739
T123 245-255 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T124 284-296 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T149 79-87 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T150 170-175 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T151 201-208 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T152 245-264 Chemical denotes amino-acid residues http://purl.obolibrary.org/obo/CHEBI_33708
T153 284-296 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T124 0-345 Sentence denotes We then investigated the glycan shield densities of seven viral class I fusion proteins using a global structural approach which was calculated by dividing the number of amino-acids that interact with glycans by the number of solvent-accessible amino-acid residues of each respective glycoprotein and plotted this against oligomannose abundance.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
752 25-31 Chemical denotes glycan MESH:D011134
738 25-31 Chemical denotes glycan MESH:D011134
753 201-208 Chemical denotes glycans MESH:D011134
754 322-334 Chemical denotes oligomannose

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T4210 284-296 Protein denotes glycoprotein https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T124 0-345 Sentence denotes We then investigated the glycan shield densities of seven viral class I fusion proteins using a global structural approach which was calculated by dividing the number of amino-acids that interact with glycans by the number of solvent-accessible amino-acid residues of each respective glycoprotein and plotted this against oligomannose abundance.