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PMC:7253482 / 20794-21101 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
706 75-86 Species denotes coronavirus Tax:11118
708 220-223 Gene denotes GPC Gene:2995
711 115-121 Chemical denotes glycan MESH:D011134
712 299-306 Chemical denotes glycans MESH:D011134

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T118 40-47 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T119 89-97 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T120 272-279 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T118 240-241 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T210 40-47 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T211 89-97 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T212 272-279 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T213 299-306 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T82304 0-7 RB denotes However
T18710 7-8 -COMMA- denotes ,
T92980 9-14 VBN denotes given
T59451 15-18 DT denotes the
T14852 19-32 RB denotes significantly
T91376 33-39 JJR denotes larger
T30498 40-47 NN denotes protein
T87161 48-55 NN denotes surface
T40590 56-60 NN denotes area
T34685 61-64 CC denotes and
T68729 65-71 NN denotes volume
T30100 72-74 IN denotes of
T69433 75-86 NN denotes coronavirus
T57189 87-88 NN denotes S
T90347 89-97 NNS denotes proteins
T54950 97-98 -COMMA- denotes ,
T25542 99-107 NN denotes coverage
T55713 108-110 IN denotes of
T73077 111-114 DT denotes the
T91248 115-121 NN denotes glycan
T75525 122-130 NN denotes “shield”
T85581 131-135 IN denotes over
T10462 136-139 DT denotes the
T38271 140-153 JJ denotes proteinaceous
T15422 154-161 NN denotes surface
T79412 162-164 VBZ denotes is
T84846 165-177 RB denotes considerably
T29000 178-185 JJR denotes sparser
T67524 186-188 IN denotes in
T19223 189-199 NN denotes comparison
T56739 200-202 TO denotes to
T26633 203-206 DT denotes the
T50837 207-214 JJR denotes smaller
T14862 215-219 NN denotes LASV
T24662 220-223 NN denotes GPC
T66930 223-224 -COMMA- denotes ,
T41800 225-230 WDT denotes which
T43310 231-239 VBZ denotes occludes
T12542 240-241 DT denotes a
T78671 242-245 RB denotes far
T97136 246-253 JJR denotes greater
T85689 254-264 NN denotes proportion
T37643 265-267 IN denotes of
T83557 268-271 DT denotes the
T32584 272-279 NN denotes protein
T81297 280-287 NN denotes surface
T57424 288-292 IN denotes with
T34206 293-298 JJR denotes fewer
T37921 299-306 NNS denotes glycans
R91538 T79412 T82304 arg1Of is,However
R85045 T79412 T18710 arg1Of is,","
R61463 T79412 T92980 arg1Of is,given
R62165 T34685 T92980 arg2Of and,given
R65513 T34685 T59451 arg1Of and,the
R8832 T91376 T14852 arg1Of larger,significantly
R81910 T34685 T91376 arg1Of and,larger
R33779 T40590 T30498 arg1Of area,protein
R38415 T40590 T87161 arg1Of area,surface
R59919 T40590 T34685 arg1Of area,and
R50264 T68729 T34685 arg2Of volume,and
R25119 T68729 T30100 arg1Of volume,of
R52004 T90347 T30100 arg2Of proteins,of
R14652 T90347 T69433 arg1Of proteins,coronavirus
R24908 T90347 T57189 arg1Of proteins,S
R17774 T79412 T54950 arg1Of is,","
R34860 T25542 T55713 arg1Of coverage,of
R72417 T75525 T55713 arg2Of “shield”,of
R90220 T75525 T73077 arg1Of “shield”,the
R90068 T75525 T91248 arg1Of “shield”,glycan
R72163 T25542 T85581 arg1Of coverage,over
R8424 T15422 T85581 arg2Of surface,over
R68158 T15422 T10462 arg1Of surface,the
R19054 T15422 T38271 arg1Of surface,proteinaceous
R94280 T25542 T79412 arg1Of coverage,is
R3001 T29000 T79412 arg2Of sparser,is
R16084 T29000 T84846 arg1Of sparser,considerably
R67521 T25542 T29000 arg1Of coverage,sparser
R23889 T79412 T67524 arg1Of is,in
R24573 T19223 T67524 arg2Of comparison,in
R53479 T19223 T56739 arg1Of comparison,to
R81143 T24662 T56739 arg2Of GPC,to
R88101 T24662 T26633 arg1Of GPC,the
R45175 T24662 T50837 arg1Of GPC,smaller
R12860 T24662 T14862 arg1Of GPC,LASV
R45822 T24662 T66930 arg1Of GPC,","
R42415 T24662 T41800 arg1Of GPC,which
R50107 T24662 T43310 arg1Of GPC,occludes
R46471 T85689 T43310 arg2Of proportion,occludes
R71428 T85689 T12542 arg1Of proportion,a
R2307 T97136 T78671 arg1Of greater,far
R10719 T85689 T97136 arg1Of proportion,greater
R12427 T85689 T37643 arg1Of proportion,of
R68593 T81297 T37643 arg2Of surface,of
R97141 T81297 T83557 arg1Of surface,the
R93509 T81297 T32584 arg1Of surface,protein
R50130 T43310 T57424 arg1Of occludes,with
R62864 T37921 T57424 arg2Of glycans,with
R15665 T37921 T34206 arg1Of glycans,fewer

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T117 40-47 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T118 89-97 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T119 272-279 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T144 40-47 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T145 89-97 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T146 272-279 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T147 299-306 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T151 215-219 Species denotes LASV NCBItxid:11620

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T122 0-307 Sentence denotes However, given the significantly larger protein surface area and volume of coronavirus S proteins, coverage of the glycan “shield” over the proteinaceous surface is considerably sparser in comparison to the smaller LASV GPC, which occludes a far greater proportion of the protein surface with fewer glycans.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
706 75-86 Species denotes coronavirus Tax:11118
711 115-121 Chemical denotes glycan MESH:D011134
708 220-223 Gene denotes GPC Gene:2995
712 299-306 Chemical denotes glycans MESH:D011134

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T4091 87-97 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T4124 220-223 Protein denotes GPC https://www.uniprot.org/uniprot/P03711

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T122 0-307 Sentence denotes However, given the significantly larger protein surface area and volume of coronavirus S proteins, coverage of the glycan “shield” over the proteinaceous surface is considerably sparser in comparison to the smaller LASV GPC, which occludes a far greater proportion of the protein surface with fewer glycans.