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PMC:7253482 / 20748-21103 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
706 121-132 Species denotes coronavirus Tax:11118
708 266-269 Gene denotes GPC Gene:2995
710 18-24 Chemical denotes glycan MESH:D011134
711 161-167 Chemical denotes glycan MESH:D011134
712 345-352 Chemical denotes glycans MESH:D011134

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T118 86-93 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T119 135-143 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T120 318-325 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T118 286-287 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T210 86-93 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T211 135-143 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T212 318-325 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T213 345-352 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T7 38-44 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes weight http://purl.bioontology.org/ontology/MEDDRA/10047890

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T11359 3-10 VBP denotes consist
T63374 11-13 IN denotes of
T22368 14-16 CD denotes 25
T83476 16-17 NN denotes %
T86335 18-24 NN denotes glycan
T7181 25-27 IN denotes by
T64282 28-37 JJ denotes molecular
T19690 38-44 NN denotes weight
T82304 46-53 RB denotes However
T18710 53-54 -COMMA- denotes ,
T92980 55-60 VBN denotes given
T59451 61-64 DT denotes the
T14852 65-78 RB denotes significantly
T91376 79-85 JJR denotes larger
T30498 86-93 NN denotes protein
T87161 94-101 NN denotes surface
T40590 102-106 NN denotes area
T34685 107-110 CC denotes and
T68729 111-117 NN denotes volume
T30100 118-120 IN denotes of
T69433 121-132 NN denotes coronavirus
T57189 133-134 NN denotes S
T90347 135-143 NNS denotes proteins
T54950 143-144 -COMMA- denotes ,
T25542 145-153 NN denotes coverage
T55713 154-156 IN denotes of
T73077 157-160 DT denotes the
T91248 161-167 NN denotes glycan
T75525 168-176 NN denotes “shield”
T85581 177-181 IN denotes over
T10462 182-185 DT denotes the
T38271 186-199 JJ denotes proteinaceous
T15422 200-207 NN denotes surface
T79412 208-210 VBZ denotes is
T84846 211-223 RB denotes considerably
T29000 224-231 JJR denotes sparser
T67524 232-234 IN denotes in
T19223 235-245 NN denotes comparison
T56739 246-248 TO denotes to
T26633 249-252 DT denotes the
T50837 253-260 JJR denotes smaller
T14862 261-265 NN denotes LASV
T24662 266-269 NN denotes GPC
T66930 269-270 -COMMA- denotes ,
T41800 271-276 WDT denotes which
T43310 277-285 VBZ denotes occludes
T12542 286-287 DT denotes a
T78671 288-291 RB denotes far
T97136 292-299 JJR denotes greater
T85689 300-310 NN denotes proportion
T37643 311-313 IN denotes of
T83557 314-317 DT denotes the
T32584 318-325 NN denotes protein
T81297 326-333 NN denotes surface
T57424 334-338 IN denotes with
T34206 339-344 JJR denotes fewer
T37921 345-352 NNS denotes glycans
R58193 T11359 T63374 arg1Of consist,of
R50550 T86335 T63374 arg2Of glycan,of
R57960 T86335 T22368 arg1Of glycan,25
R16310 T22368 T83476 arg1Of 25,%
R14418 T86335 T7181 arg1Of glycan,by
R13645 T19690 T7181 arg2Of weight,by
R47903 T19690 T64282 arg1Of weight,molecular
R91538 T79412 T82304 arg1Of is,However
R85045 T79412 T18710 arg1Of is,","
R61463 T79412 T92980 arg1Of is,given
R62165 T34685 T92980 arg2Of and,given
R65513 T34685 T59451 arg1Of and,the
R8832 T91376 T14852 arg1Of larger,significantly
R81910 T34685 T91376 arg1Of and,larger
R33779 T40590 T30498 arg1Of area,protein
R38415 T40590 T87161 arg1Of area,surface
R59919 T40590 T34685 arg1Of area,and
R50264 T68729 T34685 arg2Of volume,and
R25119 T68729 T30100 arg1Of volume,of
R52004 T90347 T30100 arg2Of proteins,of
R14652 T90347 T69433 arg1Of proteins,coronavirus
R24908 T90347 T57189 arg1Of proteins,S
R17774 T79412 T54950 arg1Of is,","
R34860 T25542 T55713 arg1Of coverage,of
R72417 T75525 T55713 arg2Of “shield”,of
R90220 T75525 T73077 arg1Of “shield”,the
R90068 T75525 T91248 arg1Of “shield”,glycan
R72163 T25542 T85581 arg1Of coverage,over
R8424 T15422 T85581 arg2Of surface,over
R68158 T15422 T10462 arg1Of surface,the
R19054 T15422 T38271 arg1Of surface,proteinaceous
R94280 T25542 T79412 arg1Of coverage,is
R3001 T29000 T79412 arg2Of sparser,is
R16084 T29000 T84846 arg1Of sparser,considerably
R67521 T25542 T29000 arg1Of coverage,sparser
R23889 T79412 T67524 arg1Of is,in
R24573 T19223 T67524 arg2Of comparison,in
R53479 T19223 T56739 arg1Of comparison,to
R81143 T24662 T56739 arg2Of GPC,to
R88101 T24662 T26633 arg1Of GPC,the
R45175 T24662 T50837 arg1Of GPC,smaller
R12860 T24662 T14862 arg1Of GPC,LASV
R45822 T24662 T66930 arg1Of GPC,","
R42415 T24662 T41800 arg1Of GPC,which
R50107 T24662 T43310 arg1Of GPC,occludes
R46471 T85689 T43310 arg2Of proportion,occludes
R71428 T85689 T12542 arg1Of proportion,a
R2307 T97136 T78671 arg1Of greater,far
R10719 T85689 T97136 arg1Of proportion,greater
R12427 T85689 T37643 arg1Of proportion,of
R68593 T81297 T37643 arg2Of surface,of
R97141 T81297 T83557 arg1Of surface,the
R93509 T81297 T32584 arg1Of surface,protein
R50130 T43310 T57424 arg1Of occludes,with
R62864 T37921 T57424 arg2Of glycans,with
R15665 T37921 T34206 arg1Of glycans,fewer

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T117 86-93 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T118 135-143 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T119 318-325 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T144 86-93 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T145 135-143 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T146 318-325 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T147 345-352 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T151 261-265 Species denotes LASV NCBItxid:11620

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T122 46-353 Sentence denotes However, given the significantly larger protein surface area and volume of coronavirus S proteins, coverage of the glycan “shield” over the proteinaceous surface is considerably sparser in comparison to the smaller LASV GPC, which occludes a far greater proportion of the protein surface with fewer glycans.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
710 18-24 Chemical denotes glycan MESH:D011134
706 121-132 Species denotes coronavirus Tax:11118
711 161-167 Chemical denotes glycan MESH:D011134
708 266-269 Gene denotes GPC Gene:2995
712 345-352 Chemical denotes glycans MESH:D011134

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T4091 133-143 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T4124 266-269 Protein denotes GPC https://www.uniprot.org/uniprot/P03711

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T122 46-353 Sentence denotes However, given the significantly larger protein surface area and volume of coronavirus S proteins, coverage of the glycan “shield” over the proteinaceous surface is considerably sparser in comparison to the smaller LASV GPC, which occludes a far greater proportion of the protein surface with fewer glycans.