> top > docs > PMC:7253482 > spans > 19885-20230 > annotations

PMC:7253482 / 19885-20230 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
608 7-10 Gene denotes Env Gene:64006
609 1-6 Species denotes HIV-1 Tax:11676
610 11-17 Chemical denotes glycan MESH:D011134
617 96-100 Disease denotes SARS MESH:D045169

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T110 1-4 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T111 89-92 Body_part denotes map http://purl.org/sig/ont/fma/fma67847
T112 296-299 Body_part denotes map http://purl.org/sig/ont/fma/fma67847
T113 307-319 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T73 96-100 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T109 27-28 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 55-56 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T111 133-134 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 170-172 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T113 334-335 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T203 86-88 Chemical denotes EM http://purl.obolibrary.org/obo/CHEBI_73507
T204 293-295 Chemical denotes EM http://purl.obolibrary.org/obo/CHEBI_73507
T205 307-319 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T54 159-169 http://purl.obolibrary.org/obo/OGMS_0000045 denotes disordered

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T92374 1-6 NN denotes HIV-1
T58960 7-10 NN denotes Env
T67673 11-17 NN denotes glycan
T21302 18-25 NNS denotes shields
T48820 27-28 DT denotes a
T79466 29-33 NNP denotes Left
T16113 34-39 NN denotes panel
T98169 39-40 -COLON- denotes :
T63629 41-50 VBN denotes Sharpened
T90429 51-67 JJ denotes 3.2-Å-resolution
T6423 68-80 JJ denotes C3-symmetric
T13124 81-88 NN denotes cryo-EM
T56273 89-92 NN denotes map
T86558 93-95 IN denotes of
T37174 96-100 NNP denotes SARS
T84496 101-102 NNP denotes S
T86959 103-105 NN denotes 2P
T75209 106-118 NN denotes ectodomain52
T37067 119-129 VBN denotes visualized
T22530 130-132 IN denotes at
T60171 133-134 DT denotes a
T27128 135-139 JJ denotes high
T94740 140-147 NN denotes contour
T58510 148-153 NN denotes level
T66412 154-158 IN denotes with
T32176 159-169 VBN denotes disordered
T5395 170-172 NN denotes S1
T34000 173-189 JJ denotes receptor-binding
T54890 190-193 CC denotes and
T9018 194-204 JJ denotes N-terminal
T68442 205-212 NNS denotes domains
T72184 213-222 VBG denotes extending
T12801 223-226 RP denotes out
T26493 227-231 IN denotes from
T4854 232-235 DT denotes the
T35333 236-243 JJ denotes central
T39891 244-248 NN denotes core
T4786 250-256 JJ denotes Middle
T40721 257-262 NN denotes panel
T2753 262-263 -COLON- denotes :
T68941 264-272 JJ denotes Low-pass
T98545 273-281 VBN denotes filtered
T5712 282-283 -LRB- denotes (
T65635 283-286 NN denotes lpf
T36825 286-287 -RRB- denotes )
T66628 288-295 NN denotes cryo-EM
T90188 296-299 NN denotes map
T57750 300-302 IN denotes of
T25808 303-306 DT denotes the
T69826 307-319 NN denotes glycoprotein
T87240 320-330 VBN denotes visualised
T62278 331-333 IN denotes at
T88612 334-335 DT denotes a
T55069 336-339 JJ denotes low
R77760 T21302 T92374 arg1Of shields,HIV-1
R2872 T21302 T58960 arg1Of shields,Env
R23954 T21302 T67673 arg1Of shields,glycan
R98907 T16113 T48820 arg1Of panel,a
R90546 T16113 T79466 arg1Of panel,Left
R66182 T16113 T98169 arg1Of panel,:
R45510 T56273 T63629 arg2Of map,Sharpened
R28106 T56273 T90429 arg1Of map,3.2-Å-resolution
R92380 T56273 T6423 arg1Of map,C3-symmetric
R65018 T56273 T13124 arg1Of map,cryo-EM
R80721 T56273 T86558 arg1Of map,of
R26733 T75209 T86558 arg2Of ectodomain52,of
R61425 T84496 T37174 arg1Of S,SARS
R9682 T75209 T84496 arg1Of ectodomain52,S
R64810 T75209 T86959 arg1Of ectodomain52,2P
R88141 T75209 T37067 arg2Of ectodomain52,visualized
R95052 T37067 T22530 arg1Of visualized,at
R74218 T58510 T22530 arg2Of level,at
R4190 T58510 T60171 arg1Of level,a
R55817 T58510 T27128 arg1Of level,high
R67792 T58510 T94740 arg1Of level,contour
R69414 T56273 T66412 arg1Of map,with
R80505 T68442 T66412 arg2Of domains,with
R23158 T68442 T32176 arg2Of domains,disordered
R42599 T68442 T5395 arg1Of domains,S1
R30349 T68442 T34000 arg1Of domains,receptor-binding
R77410 T34000 T54890 arg1Of receptor-binding,and
R20022 T9018 T54890 arg2Of N-terminal,and
R45262 T68442 T9018 arg1Of domains,N-terminal
R46136 T68442 T72184 arg1Of domains,extending
R54218 T72184 T12801 arg1Of extending,out
R98187 T72184 T26493 arg1Of extending,from
R88765 T39891 T26493 arg2Of core,from
R79877 T39891 T4854 arg1Of core,the
R58999 T39891 T35333 arg1Of core,central
R3609 T40721 T4786 arg1Of panel,Middle
R2263 T40721 T2753 arg1Of panel,:
R7635 T90188 T68941 arg1Of map,Low-pass
R50307 T90188 T98545 arg1Of map,filtered
R44751 T90188 T5712 arg1Of map,(
R94760 T65635 T5712 arg2Of lpf,(
R81995 T36825 T5712 arg3Of ),(
R54195 T90188 T66628 arg1Of map,cryo-EM
R93131 T90188 T57750 arg1Of map,of
R32904 T69826 T57750 arg2Of glycoprotein,of
R22697 T69826 T25808 arg1Of glycoprotein,the
R67130 T69826 T87240 arg2Of glycoprotein,visualised
R62598 T87240 T62278 arg1Of visualised,at

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T109 1-4 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T110 89-92 Body_part denotes map http://purl.org/sig/ont/fma/fma67847
T111 296-299 Body_part denotes map http://purl.org/sig/ont/fma/fma67847
T112 307-319 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T140 307-319 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T147 1-6 Species denotes HIV-1 NCBItxid:11676
T148 96-100 Species denotes SARS NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T114 27-40 Sentence denotes a Left panel:
T115 41-249 Sentence denotes Sharpened 3.2-Å-resolution C3-symmetric cryo-EM map of SARS S 2P ectodomain52 visualized at a high contour level with disordered S1 receptor-binding and N-terminal domains extending out from the central core.
T116 250-263 Sentence denotes Middle panel:

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T68 96-100 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
609 1-6 Species denotes HIV-1 Tax:11676
608 7-10 Gene denotes Env Gene:64006
610 11-17 Chemical denotes glycan MESH:D011134
617 96-100 Disease denotes SARS MESH:D045169

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T3964 7-10 Protein denotes Env https://www.uniprot.org/uniprot/C1JJY3|https://www.uniprot.org/uniprot/P24123
T3966 307-319 Protein denotes glycoprotein https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T114 27-40 Sentence denotes a Left panel:
T115 41-249 Sentence denotes Sharpened 3.2-Å-resolution C3-symmetric cryo-EM map of SARS S 2P ectodomain52 visualized at a high contour level with disordered S1 receptor-binding and N-terminal domains extending out from the central core.
T116 250-263 Sentence denotes Middle panel: