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PMC:7253482 / 19384-19835 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
685 89-95 Chemical denotes glycan MESH:D011134
686 96-102 Chemical denotes glycan MESH:D011134
687 357-364 Chemical denotes glycans MESH:D011134
688 400-406 Chemical denotes glycan MESH:D011134
693 177-181 Disease denotes SARS MESH:D045169

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T109 447-450 Body_part denotes map http://purl.org/sig/ont/fma/fma67847

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T71 177-181 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T107 60-66 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T108 142-144 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T201 357-364 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T96638 0-3 DT denotes The
T9355 4-6 NN denotes 3D
T47791 7-18 NN denotes variability
T79677 19-23 NNS denotes maps
T51290 24-27 VBP denotes are
T66740 28-32 RBR denotes more
T28675 33-42 JJ denotes sensitive
T51626 43-45 TO denotes to
T96563 46-49 JJ denotes low
T5756 50-59 NN denotes intensity
T42122 60-66 NN denotes signal
T93380 67-70 CC denotes and
T52275 71-77 VBP denotes reveal
T65761 78-88 JJ denotes additional
T40659 89-102 NN denotes glycan–glycan
T18648 103-115 NNS denotes interactions
T53697 116-118 IN denotes in
T13379 119-123 DT denotes both
T61777 124-128 NNS denotes maps
T1991 128-129 -COMMA- denotes ,
T10706 130-137 RB denotes however
T21547 138-141 DT denotes the
T89902 142-144 NN denotes S1
T24397 145-161 JJ denotes receptor-binding
T67026 162-169 NNS denotes domains
T98351 170-172 IN denotes in
T69700 173-176 DT denotes the
T97210 177-181 NN denotes SARS
T19203 182-189 NN denotes dataset
T21495 190-194 VBD denotes were
T3893 195-200 VBN denotes shown
T33461 201-203 TO denotes to
T68704 204-209 VB denotes exist
T1970 210-212 IN denotes in
T91066 213-217 CC denotes both
T75781 218-220 RB denotes up
T44006 221-224 CC denotes and
T47879 225-229 IN denotes down
T22009 230-245 NN denotes conformations52
T80149 245-246 -COMMA- denotes ,
T10724 247-254 VBG denotes leading
T29355 255-257 TO denotes to
T48291 258-262 JJ denotes poor
T15651 263-273 NN denotes resolution
T15044 274-277 CC denotes and
T36313 278-289 JJ denotes significant
T78120 290-304 NN denotes 2D-variability
T97054 305-310 WDT denotes which
T80897 311-313 VBZ denotes is
T73857 314-323 VBN denotes convolved
T52453 324-328 IN denotes with
T12417 329-332 DT denotes the
T9415 333-344 NN denotes variability
T91463 345-351 VBG denotes coming
T37758 352-356 IN denotes from
T69399 357-364 NNS denotes glycans
T37469 365-368 CC denotes and
T7534 369-375 VBZ denotes limits
T29335 376-379 DT denotes the
T16169 380-396 NN denotes interpretability
T54909 397-399 IN denotes of
T36751 400-406 NN denotes glycan
T68517 407-416 NN denotes shielding
T73688 417-424 NNS denotes effects
T27520 425-427 IN denotes in
T1634 428-432 DT denotes this
T15004 433-439 NN denotes region
T14842 440-442 IN denotes of
T18381 443-446 DT denotes the
T85741 447-450 NN denotes map
R22476 T79677 T96638 arg1Of maps,The
R95997 T79677 T9355 arg1Of maps,3D
R80519 T79677 T47791 arg1Of maps,variability
R40472 T79677 T51290 arg1Of maps,are
R82084 T28675 T51290 arg2Of sensitive,are
R56965 T28675 T66740 arg1Of sensitive,more
R45386 T79677 T28675 arg1Of maps,sensitive
R87747 T28675 T51626 arg1Of sensitive,to
R64143 T42122 T51626 arg2Of signal,to
R50005 T42122 T96563 arg1Of signal,low
R94025 T42122 T5756 arg1Of signal,intensity
R70972 T51290 T93380 arg1Of are,and
R95204 T52275 T93380 arg2Of reveal,and
R58754 T79677 T52275 arg1Of maps,reveal
R14145 T18648 T52275 arg2Of interactions,reveal
R5294 T18648 T65761 arg1Of interactions,additional
R68909 T18648 T40659 arg1Of interactions,glycan–glycan
R88310 T52275 T53697 arg1Of reveal,in
R42132 T61777 T53697 arg2Of maps,in
R18814 T61777 T13379 arg1Of maps,both
R35607 T93380 T1991 arg1Of and,","
R8195 T3893 T1991 arg2Of shown,","
R90057 T3893 T10706 arg1Of shown,however
R82099 T67026 T21547 arg1Of domains,the
R27746 T67026 T89902 arg1Of domains,S1
R92599 T67026 T24397 arg1Of domains,receptor-binding
R73569 T67026 T98351 arg1Of domains,in
R45720 T19203 T98351 arg2Of dataset,in
R30503 T19203 T69700 arg1Of dataset,the
R24149 T19203 T97210 arg1Of dataset,SARS
R20104 T67026 T21495 arg1Of domains,were
R88806 T3893 T21495 arg2Of shown,were
R56386 T67026 T3893 arg2Of domains,shown
R54479 T68704 T3893 arg3Of exist,shown
R65901 T68704 T33461 arg1Of exist,to
R89466 T67026 T68704 arg1Of domains,exist
R55901 T68704 T1970 arg1Of exist,in
R71972 T75781 T1970 arg2Of up,in
R75698 T75781 T91066 arg1Of up,both
R54454 T1970 T44006 arg1Of in,and
R77813 T47879 T44006 arg2Of down,and
R6563 T68704 T47879 arg1Of exist,down
R57265 T22009 T47879 arg2Of conformations52,down
R54511 T3893 T80149 arg1Of shown,","
R68204 T3893 T10724 modOf shown,leading
R29757 T10724 T29355 arg1Of leading,to
R87860 T15044 T29355 arg2Of and,to
R58772 T15651 T48291 arg1Of resolution,poor
R20667 T15651 T15044 arg1Of resolution,and
R82833 T78120 T15044 arg2Of 2D-variability,and
R22945 T78120 T36313 arg1Of 2D-variability,significant
R38420 T15044 T97054 arg1Of and,which
R98282 T15044 T80897 arg1Of and,is
R52865 T73857 T80897 arg2Of convolved,is
R73995 T15044 T73857 arg2Of and,convolved
R3618 T73857 T52453 arg1Of convolved,with
R59937 T9415 T52453 arg2Of variability,with
R49442 T91463 T52453 arg3Of coming,with
R80207 T9415 T12417 arg1Of variability,the
R34571 T9415 T91463 arg1Of variability,coming
R6872 T91463 T37758 arg1Of coming,from
R43624 T69399 T37758 arg2Of glycans,from
R98318 T73857 T37469 arg1Of convolved,and
R66138 T7534 T37469 arg2Of limits,and
R77790 T15044 T7534 arg1Of and,limits
R83430 T16169 T7534 arg2Of interpretability,limits
R17631 T16169 T29335 arg1Of interpretability,the
R1774 T16169 T54909 arg1Of interpretability,of
R57067 T73688 T54909 arg2Of effects,of
R86812 T73688 T36751 arg1Of effects,glycan
R74249 T73688 T68517 arg1Of effects,shielding
R94853 T7534 T27520 arg1Of limits,in
R81871 T15004 T27520 arg2Of region,in
R64817 T15004 T1634 arg1Of region,this
R92714 T15004 T14842 arg1Of region,of
R8559 T85741 T14842 arg2Of map,of
R44147 T85741 T18381 arg1Of map,the

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T108 447-450 Body_part denotes map http://purl.org/sig/ont/fma/fma67847

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T139 357-364 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T145 177-181 Species denotes SARS NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T112 0-451 Sentence denotes The 3D variability maps are more sensitive to low intensity signal and reveal additional glycan–glycan interactions in both maps, however the S1 receptor-binding domains in the SARS dataset were shown to exist in both up and down conformations52, leading to poor resolution and significant 2D-variability which is convolved with the variability coming from glycans and limits the interpretability of glycan shielding effects in this region of the map.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T66 177-181 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
685 89-95 Chemical denotes glycan MESH:D011134
686 96-102 Chemical denotes glycan MESH:D011134
693 177-181 Disease denotes SARS MESH:D045169
687 357-364 Chemical denotes glycans MESH:D011134
688 400-406 Chemical denotes glycan MESH:D011134

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T112 0-451 Sentence denotes The 3D variability maps are more sensitive to low intensity signal and reveal additional glycan–glycan interactions in both maps, however the S1 receptor-binding domains in the SARS dataset were shown to exist in both up and down conformations52, leading to poor resolution and significant 2D-variability which is convolved with the variability coming from glycans and limits the interpretability of glycan shielding effects in this region of the map.